Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005926

Physical Location & Seq

Genomic Coordinates Reverse (-)

31156878 .. 31157448

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTGCGCTTGGAATTTGCTCATTATGACTACAAATCAAAAGGAACCATAACAGCTAAAGATTTTGCCTTGTCCTTGGTTGCATCTGCTGATCTCAGTTTCTTATACAAGTTGCTTGATCGTGTTGACGATATTAACAACGCGCCACGTCTTAACAACATACAAATTACATACAAGGAATTTAAAGATTTTGCAGAGCTACGCAAGAATTTGCAGTCTTTCTCTTTGGCCATTTTCAGCTACGGCGAGGTTAATGGGGTTTTGACAAAATCAGATCTCCAGAGAGCAGCTTCCAAAGTATGTGGCATCAATGTTTCAGACAATGTGATGGACATAATCTTCCATGTATTTGATGCAAACGGTGATGGTGATCTAAGTGCGAATGAGTTTGTCAAAGTTTTACAGAACCGTGGAGGTGAACCCATAGAGTCAGGCCTCAGGGGACTCCTAACTTGCTTCTTAAACTGTGCAACTAAAAGCTGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_8

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

5.67

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	85 - 136	4.6e-09	EF-hand domain pair
EF-hand_7	PF13499	85 - 134	3.4e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005926)

Species	Orthologous Gene IDs
malus_domestica	MD02G1018100.v1.1 MD15G1162000.v1.1
prunus_persica	Prupe.7G257300_v2.0.a1
pyrus_communis	pycom15g14560
rosa_chinensis	RchiOBHm_Chr2g0087011 RchiOBHm_Chr7g0219711
rosa_laevigata	RLG00000002277 RLG00000015822
rosa_multiflora	Rmu_sc0000902.1_g000013 Rmu_sc0000902.1_g000014 Rmu_sc0010698.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153960 Rroxscaffold_3G00239910 Rroxscaffold_3G00239920 Rroxscaffold_3G00239930
rosa_rugosa	Rorug01G0471500 Rorug07G0186800
rosa_samantha	Rh2AG024300 Rh2BG024800 Rh2CG024900 Rh2DG024800 Rh7AG330900 Rh7BG320600 Rh7CG348200 Rh7DG326300
rosa_wichuraiana	Rw2G001910 Rw2G001960 Rw7G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	14, 179, 208
AjiI	CACGTC	1 cut(s)	149
AluBI	AGCT	5 cut(s)	56, 199, 240, 290, 480
AluI	AGCT	5 cut(s)	56, 199, 240, 290, 480
AoxI	GGCC	2 cut(s)	228, 433
ApeKI	GCWGC	2 cut(s)	287, 480
ApoI	RAATTY	3 cut(s)	14, 179, 208
AspLEI	GCGC	2 cut(s)	9, 145
AsuHPI	GGTGA	3 cut(s)	374, 380, 428
AxyI	CCTNAGG	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	299, 467
BccI	CCATC	2 cut(s)	322, 359
BceAI	ACGGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	2 cut(s)	288, 481
BlsI	GCNGC	2 cut(s)	289, 482
BmgBI	CACGTC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	3 cut(s)	92, 315, 343
BpmI	CTGGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	75, 409
Bse21I	CCTNAGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	75, 409
BseJI	GATNNNNATC	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	109, 451
BseXI	GCAGC	2 cut(s)	299, 467
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	230, 435
BslFI	GGGAC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	230, 435
Bsp143I	GATC	4 cut(s)	91, 118, 274, 370
BspANI	GGCC	2 cut(s)	230, 435
BspCNI	CTCAG	2 cut(s)	108, 450
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	75, 409
BssMI	GATC	4 cut(s)	91, 118, 274, 370
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	362, 410, 467
BstDEI	CTNAG	3 cut(s)	95, 374, 437
BstDSI	CCRYGG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	9, 145
BstKTI	GATC	4 cut(s)	94, 121, 277, 373
BstMBI	GATC	4 cut(s)	91, 118, 274, 370
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	299, 467
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	230, 435
BtgI	CCRYGG	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	9, 145
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	7 cut(s)	56, 199, 230, 240, 290, 435, 480
CviKI_1	RGCY	7 cut(s)	56, 199, 230, 240, 290, 435, 480
DdeI	CTNAG	3 cut(s)	95, 374, 437
DpnI	GATC	4 cut(s)	93, 120, 276, 372
DpnII	GATC	4 cut(s)	91, 118, 274, 370
DraI	TTTAAA	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	347
FaiI	YATR	9 cut(s)	27, 50, 106, 161, 172, 301, 335, 345, 425
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	288, 481
Fsp4HI	GCNGC	2 cut(s)	288, 481
GlaI	GCGC	2 cut(s)	8, 144
GluI	GCNGC	2 cut(s)	288, 481
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	230, 435
HhaI	GCGC	2 cut(s)	9, 145
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	7, 143
HinP1I	GCGC	2 cut(s)	7, 143
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	428, 444
HphI	GGTGA	3 cut(s)	374, 380, 428
Hpy166II	GTNNAC	2 cut(s)	127, 419
Hpy188I	TCNGA	2 cut(s)	274, 319
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	127, 419
HpyCH4III	ACNGT	3 cut(s)	362, 410, 467
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	83, 194, 214, 356, 470
HpyF3I	CTNAG	3 cut(s)	95, 374, 437
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	7, 143
Kzo9I	GATC	4 cut(s)	91, 118, 274, 370
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	3 cut(s)	293, 417, 424
Lsp1109I	GCAGC	2 cut(s)	299, 467
LweI	GCATC	3 cut(s)	92, 315, 343
MaeII	ACGT	1 cut(s)	148
MalI	GATC	4 cut(s)	93, 120, 276, 372
MboI	GATC	4 cut(s)	91, 118, 274, 370
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	4 cut(s)	14, 165, 179, 208
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	437, 438
MnlI	CCTC	3 cut(s)	241, 407, 446
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	5 cut(s)	135, 153, 183, 252, 461
Msp20I	TGGCCA	1 cut(s)	230
MvnI	CGCG	1 cut(s)	143
NdeII	GATC	4 cut(s)	91, 118, 274, 370
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	289, 482
PleI	GAGTC	2 cut(s)	436, 438
PpsI	GAGTC	2 cut(s)	436, 438
PspN4I	GGNNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	274
SaqAI	TTAA	5 cut(s)	135, 153, 183, 252, 461
SatI	GCNGC	2 cut(s)	288, 481
Sau3AI	GATC	4 cut(s)	91, 118, 274, 370
SchI	GAGTC	2 cut(s)	437, 438
SetI	ASST	8 cut(s)	58, 151, 201, 242, 252, 292, 418, 482
SfaNI	GCATC	3 cut(s)	92, 315, 343
Sse9I	AATT	4 cut(s)	14, 165, 179, 208
SseBI	AGGCCT	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	362, 410, 467
TaiI	ACGT	1 cut(s)	151
TasI	AATT	4 cut(s)	14, 165, 179, 208
Tru1I	TTAA	5 cut(s)	135, 153, 183, 252, 461
Tru9I	TTAA	5 cut(s)	135, 153, 183, 252, 461
TseI	GCWGC	2 cut(s)	287, 480
XapI	RAATTY	3 cut(s)	14, 179, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.