Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005653

Physical Location & Seq

Genomic Coordinates Reverse (-)

38146631 .. 38150330

Gene Structure 3700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1338300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGAACAGAACAAAGGAGCTTGGAAGCTGTTTCGACAGGAAATCTGGTTGGTGCGTGTTCCTGCTCGAGCATACAGCTCACCGAGGAGTTGGCACTTTGGTTGATTGTCGGGCTCCTGCTTGTCACAATACTGCAAGAGAAGAACAAAGTTAGTTCTGAAATGTGCATTTGTGGGGCCTTAGGTGAAGGCCTTGAGGCTCGCAATCAAAACCAACTAGGTGAAGTTGCTAGTGAGGGAATTCGTAATCCTTATCCGCAAAACTCTACTACTAAGAAGTATCTTTTACCCCGAAATCGCTCGCAATTACAACGCCATCTGGAGGCTGTTCTATGGAGCAGAGATTCGGAACGTTTTTCACTTGGAAATTGGTTTTTCTTAAATAGTTCGTGCAGAGGCGACTCTGTAACTTGGCCTGAAGAGAAACTTCCTCTTCCTTTATGGGATTTACTAGCTATAAGAGATGAAAATGGTCACCGTCACCGGCAACATCAGGATCATCAGCAACGGCGGAATAAAGCTCCAATCACACTGCTGCATCAGAACCATGAGGGGTTGTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

7.05

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48870 AT1G48870 AT1G48870
fragaria_vesca	FvH4_1g24010 FvH4_1g24010
malus_domestica	MD01G1011600.v1.1 MD15G1338300.v1.1 MD15G1338400.v1.1
prunus_persica	Prupe.6G159500_v2.0.a1
pyrus_communis	pycom01g04160
rosa_chinensis	RchiOBHm_Chr2g0120151
rosa_laevigata	RLG00000018526 RLG00000020843 RLG00000027801 RLG00000035164
rosa_multiflora	Rmu_co8333869.1_g000001 Rmu_co8364489.1_g000001 Rmu_sc0015469.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123670 Rroxscaffold_7G00185390
rosa_rugosa	Rorug02G0227100.1 Rorug02G0227200
rosa_samantha	Rh2AG283800 Rh2BG295100 Rh2CG272500 Rh2DG308800
rosa_wichuraiana	Rw2G022730 Rw5G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	257, 511
AclI	AACGTT	1 cut(s)	352
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	21, 29, 79, 455, 521
AluI	AGCT	5 cut(s)	21, 29, 79, 455, 521
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	3 cut(s)	177, 190, 413
ApeKI	GCWGC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	5 cut(s)	73, 197, 233, 467, 473
AvaI	CYCGRG	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	218, 231, 452
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	116, 178
BmsI	GCATC	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse118I	RCCGGY	1 cut(s)	483
Bse21I	CCTNAGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	522
BsgI	GTGCAG	1 cut(s)	412
BshFI	GGCC	3 cut(s)	179, 192, 415
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	322
BsnI	GGCC	3 cut(s)	179, 192, 415
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	2 cut(s)	257, 511
BspANI	GGCC	3 cut(s)	179, 192, 415
BspLI	GGNNCC	2 cut(s)	116, 178
BspPI	GGATC	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	483
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	2 cut(s)	414, 438
BstC8I	GCNNGC	2 cut(s)	202, 302
BstDEI	CTNAG	2 cut(s)	181, 273
BstEII	GGTNACC	1 cut(s)	473
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstPI	GGTNACC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	179, 192, 415
BtsI	GCAGTG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	202, 302
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	177
CviAII	CATG	1 cut(s)	548
DdeI	CTNAG	2 cut(s)	181, 273
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	414, 438
EarI	CTCTTC	2 cut(s)	414, 438
EciI	GGCGGA	1 cut(s)	526
Eco147I	AGGCCT	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	551
FaiI	YATR	5 cut(s)	74, 334, 442, 458, 549
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	3 cut(s)	218, 231, 452
GluI	GCNGC	1 cut(s)	536
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	179, 192, 415
HapII	CCGG	1 cut(s)	484
Hin1II	CATG	1 cut(s)	551
HinfI	GANTC	2 cut(s)	344, 401
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	5 cut(s)	73, 197, 233, 467, 473
Hpy188I	TCNGA	3 cut(s)	160, 349, 543
Hpy188III	TCNNGA	2 cut(s)	320, 494
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	136, 168, 393, 538
HpyF3I	CTNAG	2 cut(s)	181, 273
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	551
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	4 cut(s)	18, 120, 336, 526
LpnPI	CCDG	8 cut(s)	24, 32, 76, 131, 305, 429, 479, 497
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	218, 231, 452
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	4 cut(s)	124, 406, 473, 479
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	3 cut(s)	154, 425, 431
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	240, 305, 367
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	79, 190, 229, 316, 389, 441, 544
MseI	TTAA	1 cut(s)	380
MspI	CCGG	1 cut(s)	484
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	551
NlaIV	GGNNCC	2 cut(s)	116, 178
NmuCI	GTSAC	3 cut(s)	124, 473, 479
PaeR7I	CTCGAG	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	116, 178
PspPI	GGNCC	1 cut(s)	177
PspXI	VCTCGAGB	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	23, 31, 81, 187, 223, 355, 457, 523
SfaNI	GCATC	1 cut(s)	547
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	67, 194
SmoI	CTYRAG	2 cut(s)	67, 194
Sse9I	AATT	3 cut(s)	240, 305, 367
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	257, 511
SspMI	CTAG	3 cut(s)	218, 231, 452
StuI	AGGCCT	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	35, 68
TasI	AATT	3 cut(s)	240, 305, 367
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	3 cut(s)	124, 473, 479
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	3 cut(s)	124, 473, 479
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	537
XapI	RAATTY	1 cut(s)	240
XhoI	CTCGAG	1 cut(s)	67
XspI	CTAG	3 cut(s)	218, 231, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.