Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333869.1

Orthogroup ID

OG0005653

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 779

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333869.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

cgtctcatttcttcgtccatggataaaactgttcgtctgtgggaagttggttgcagtcagtgcctacatgttttccatcacaatgactatgtaacatgcattcagttcaatcctctcaatcacaattacttcatcagtggatccatagatggaaaggctcgagtttgggggctttctgagaagcgagttgttgactgggctgatgtgcgagatgtcataacagctatttgttatcaaccagatgggaagggttttgcagttggttcccttgcaggcacttgccgcttctatgaagaatcaggaaaagaagctcttcagcttgttgcacagattcatattcattctagaaggaagacctctggcaacaaaatcaccggcatccaggtattcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

8.67

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48870 AT1G48870 AT1G48870
fragaria_vesca	FvH4_1g24010 FvH4_1g24010
malus_domestica	MD01G1011600.v1.1 MD15G1338300.v1.1 MD15G1338400.v1.1
prunus_persica	Prupe.6G159500_v2.0.a1
pyrus_communis	pycom01g04160
rosa_chinensis	RchiOBHm_Chr2g0120151
rosa_laevigata	RLG00000018526 RLG00000020843 RLG00000027801 RLG00000035164
rosa_multiflora	Rmu_co8333869.1_g000001 Rmu_co8364489.1_g000001 Rmu_sc0015469.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123670 Rroxscaffold_7G00185390
rosa_rugosa	Rorug02G0227100.1 Rorug02G0227200
rosa_samantha	Rh2AG283800 Rh2BG295100 Rh2CG272500 Rh2DG308800
rosa_wichuraiana	Rw2G022730 Rw5G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	135, 148
AcuI	CTGAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	224, 311, 319
AluI	AGCT	3 cut(s)	224, 311, 319
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	364, 382
AvaI	CYCGRG	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	359
BccI	CCATC	3 cut(s)	84, 143, 236
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	142, 265
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	8
BsmBI	CGTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	140
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	142, 265
BspPI	GGATC	2 cut(s)	135, 148
BspQI	GCTCTTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 282
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	71, 99
BstSCI	CCNGG	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	65, 142
Cac8I	GCNNGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	374
CviAII	CATG	3 cut(s)	19, 68, 96
CviJI	RGCY	6 cut(s)	158, 172, 200, 224, 311, 319
CviKI_1	RGCY	6 cut(s)	158, 172, 200, 224, 311, 319
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	3 cut(s)	22, 71, 99
FaiI	YATR	8 cut(s)	20, 69, 90, 97, 146, 218, 291, 336
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	3 cut(s)	18, 67, 95
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	283
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	3 cut(s)	22, 71, 99
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	296, 331
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	364, 382
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	300, 345
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	241, 342
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	54, 99, 257, 272, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 282
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	22, 71, 99
Kzo9I	GATC	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	181, 252, 258, 285, 345, 368, 388
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	3, 305, 305, 364
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	1 cut(s)	124
MnlI	CCTC	2 cut(s)	123, 367
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	60, 282
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	22, 71, 99
NlaIV	GGNNCC	2 cut(s)	142, 265
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	2 cut(s)	71, 99
PaeR7I	CTCGAG	1 cut(s)	159
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	296, 331
PkrI	GCNGC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	142, 265
PspXI	VCTCGAGB	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	318
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	6 cut(s)	226, 313, 321, 359, 387, 395
SfaNI	GCATC	1 cut(s)	387
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	124
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	296, 331
TscAI	CASTG	2 cut(s)	65, 142
TspDTI	ATGAA	4 cut(s)	121, 306, 323, 329
TspRI	CASTG	2 cut(s)	65, 142
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	2 cut(s)	71, 99
XhoI	CTCGAG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.