Rorug02G0227200

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
22458977 .. 22461058
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0227200.1

Sequence Viewer

Length: 1293 bp
ATGGGGTTTTCTCAGAGAAAGCTCCTCCCAGGAAACATCTTTAACGATCCAGATGAAGCCATCTGTAAAACTAGTTGTGACCCGAATCTAAATAAACAAGGCTTGTGTGATAAACCTTGCTGCAAAATCTGCCCAAAAGTCTGTAAATTTTTTGTGGGTGATAATCTTCTACCACCAAATTTACCAGCTTTTCCTGACCCACCACCTCTACTACCGCCGCCGCCGCTGCTGCCTGAGGTGGTTGAGACTAGACCAGACTATACTAGCCAGAAGCATCTGATCCAAACAAGTATGATAGTTGGGTCCTGTATGATCGGGGCTTCTCTTTTTCTCTGTATTGTTTTTGCAATTATGAGATACTATTCGAGGCGGAGAAATCCCAGAAGGAGAAGCTCGCCGATTCTGTTTGCTACGGCGGAAGATTTTCTTGATGAGGATCATGGGCCTGTGCTTGATCACCCCATTTGGTACATCCACTCTGTGGGTCTGTCTCAGGCTTTGATCGATTCCATTACAGTTTGTAAGTATAGAAAAGATGAGGGTTTGATTGAGGGGACGGATTGTTCTGTTTGCTTGAGTGAGTTTGAGGAAGATGAGAGTCTCAGGCTTTTGCCAAAGTGTAGTCATGCTTTTCACATCCCTTGTATTGATACATGGTTGAGATCACATAAGAATTGCCCTCTTTGCCGCGCTCCGATTGTTTGTGGTGCTGCTAGTGATCAAGTGGGTGTCCCGGATTCGATTGCGAGTGGTTCGGGTTCTGGGGAGAGCATTCGGGTGGAGAATTTGGAGAGTGTTGAAGGGATTGGAAGAGGGACTAGTGAGGTTGGAGGTACAGATGATGAGAATGTCAGTGCAATTTCTATTGATGGAAGGAGTGTTGAAAGTTCAAAGGTTTTGCCCAATTCTATTTTGGCTGAGGGAAGTTCTGATCCAAGAGCATTGAGCGATTTGGCGGATAATAGACGAGTGACTGAAGATGATGTACAACCAATGAGGAGGTCAGTGTCGGTGGATTCAGTGTCTGCTACAAGAATTTATAATGCTGTGGCCAATGCTATTCCAGAACAAGGAAGTTCGAATTCCCAATTAGTACTTGTAAAGAATCCAAAGTTGGGGATTGTTCCGAAGCAGGACAGTGCAAGTTCTAGCCTATCCAAGCATTGGAGAAGTTCTTCAAATGGTCTTTCTCTGCAGATGGTGCCAATGGCAATGAAAAGGCCTTTCCCCTCTGGCAGGAAGCTTTTCTCATCGAAACACAGAAGGACTCTTAGCTCAATCCTTCCCTTATGA

Protein Analysis

430

Amino Acids

46.88

Weight (kDa)

6.51

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 187 - 230 3.2e-14 Ring finger domain
zf-RING_11 PF17123 187 - 216 1.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 188 - 229 1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 188 - 229 1.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 190 - 230 5.9e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 1201
AccB7I CCANNNNNTGG 2 cut(s) 481, 1164
AccII CGCG 1 cut(s) 690
AciI CCGC 8 cut(s) 215, 218, 221, 224, 370, 416, 688, 956
AclWI GGATC 4 cut(s) 41, 274, 444, 926
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 5 cut(s) 146, 178, 784, 1035, 1081
AcuI CTGAAG 1 cut(s) 996
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 4 cut(s) 470, 835, 987, 1095
AfiI CCNNNNNNNGG 5 cut(s) 481, 1070, 1115, 1164, 1236
AgsI TTSAA 4 cut(s) 800, 884, 891, 1179
AhlI ACTAGT 2 cut(s) 71, 818
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 5 cut(s) 22, 188, 393, 1243, 1275
AluI AGCT 5 cut(s) 22, 188, 393, 1243, 1275
Alw26I GTCTC 3 cut(s) 239, 495, 605
AlwI GGATC 4 cut(s) 41, 274, 444, 926
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 3 cut(s) 443, 1050, 1220
ApeKI GCWGC 4 cut(s) 120, 226, 229, 710
ApoI RAATTY 5 cut(s) 146, 178, 784, 1035, 1081
Asp700I GAANNNNTTC 3 cut(s) 423, 1174, 1244
AspLEI GCGC 1 cut(s) 692
AspS9I GGNCC 2 cut(s) 303, 443
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 170, 449
AsuII TTCGAA 1 cut(s) 1079
AvaII GGWCC 1 cut(s) 303
AxyI CCTNAGG 1 cut(s) 234
BalI TGGCCA 1 cut(s) 1052
BanI GGYRCC 1 cut(s) 1201
BarI GAAGNNNNNNTAC 2 cut(s) 969, 1001
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 4 cut(s) 107, 213, 216, 697
BccI CCATC 3 cut(s) 68, 863, 1192
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 2 cut(s) 454, 718
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 3 cut(s) 239, 495, 605
BcuI ACTAGT 2 cut(s) 71, 818
BfaI CTAG 6 cut(s) 72, 249, 264, 714, 819, 1149
BfmI CTRYAG 1 cut(s) 1193
BisI GCNGC 8 cut(s) 121, 218, 221, 224, 227, 230, 688, 711
BlsI GCNGC 8 cut(s) 122, 219, 222, 225, 228, 231, 689, 712
BmcAI AGTACT 1 cut(s) 1095
Bme1390I CCNGG 2 cut(s) 30, 734
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 303, 443
BmiI GGNNCC 2 cut(s) 304, 1203
BmrFI CCNGG 2 cut(s) 30, 734
BmsI GCATC 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 1079
BpuEI CTTGAG 1 cut(s) 595
BpuMI CCSGG 1 cut(s) 734
Bsa29I ATCGAT 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 5 cut(s) 481, 1070, 1115, 1164, 1236
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 1218
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 471, 636
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 5 cut(s) 481, 1070, 1115, 1164, 1236
BseMI GCAATG 1 cut(s) 1218
BseMII CTCAG 5 cut(s) 26, 225, 506, 616, 909
BseRI GAGGAG 2 cut(s) 14, 1012
BseXI GCAGC 4 cut(s) 107, 213, 216, 697
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 3 cut(s) 445, 1052, 1222
BshNI GGYRCC 1 cut(s) 1201
BshVI ATCGAT 1 cut(s) 504
BsiSI CCGG 1 cut(s) 734
BslFI GGGAC 3 cut(s) 568, 716, 829
BslI CCNNNNNNNGG 5 cut(s) 481, 1070, 1115, 1164, 1236
BsmAI GTCTC 3 cut(s) 239, 495, 605
BsmFI GGGAC 3 cut(s) 568, 716, 829
BsmI GAATGC 1 cut(s) 771
BsnI GGCC 3 cut(s) 445, 1052, 1222
Bsp119I TTCGAA 1 cut(s) 1079
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
BspACI CCGC 8 cut(s) 215, 218, 221, 224, 370, 416, 688, 956
BspANI GGCC 3 cut(s) 445, 1052, 1222
BspCNI CTCAG 5 cut(s) 25, 226, 505, 615, 910
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 1 cut(s) 690
BspLI GGNNCC 2 cut(s) 304, 1203
BspMAI CTGCAG 1 cut(s) 1197
BspPI GGATC 4 cut(s) 41, 274, 444, 926
BspT104I TTCGAA 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 1201
BsrDI GCAATG 1 cut(s) 1218
BsrGI TGTACA 1 cut(s) 985
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 517, 1139
Bst6I CTCTTC 1 cut(s) 805
BstAPI GCANNNNNTGC 2 cut(s) 129, 1201
BstAUI TGTACA 1 cut(s) 985
BstBI TTCGAA 1 cut(s) 1079
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 6 cut(s) 12, 234, 492, 602, 918, 1271
BstENI CCTNNNNNAGG 1 cut(s) 1234
BstF5I GGATG 2 cut(s) 471, 636
BstFNI CGCG 1 cut(s) 690
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 9 cut(s) 49, 282, 315, 439, 457, 504, 665, 721, 934
BstMAI GTCTC 3 cut(s) 239, 495, 605
BstMBI GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
BstMWI GCNNNNNNNGC 6 cut(s) 129, 223, 226, 229, 684, 1201
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 732
BstSFI CTRYAG 1 cut(s) 1193
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 4 cut(s) 107, 213, 216, 697
Bsu15I ATCGAT 1 cut(s) 504
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 445, 1052, 1222
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 2 cut(s) 471, 636
BtsIMutI CAGTG 4 cut(s) 859, 1011, 1026, 1144
Cac8I GCNNGC 1 cut(s) 395
CaiI CAGNNNCTG 1 cut(s) 1025
CfoI GCGC 1 cut(s) 692
Cfr13I GGNCC 2 cut(s) 303, 443
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 4 cut(s) 469, 834, 986, 1094
CviAII CATG 3 cut(s) 440, 626, 654
CviQI GTAC 4 cut(s) 469, 834, 986, 1094
DdeI CTNAG 6 cut(s) 12, 234, 492, 602, 918, 1271
DpnI GATC 9 cut(s) 48, 281, 314, 438, 456, 503, 664, 720, 933
DpnII GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 1 cut(s) 805
EarI CTCTTC 1 cut(s) 805
EciI GGCGGA 3 cut(s) 385, 431, 971
Eco147I AGGCCT 1 cut(s) 1222
Eco47I GGWCC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 996
Eco81I CCTNAGG 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 1234
EcoO109I RGGNCCY 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 443, 629, 657
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 3 cut(s) 568, 716, 829
FatI CATG 3 cut(s) 439, 625, 653
FbaI TGATCA 2 cut(s) 454, 718
Fnu4HI GCNGC 8 cut(s) 121, 218, 221, 224, 227, 230, 688, 711
FokI GGATG 2 cut(s) 458, 623
Fsp4HI GCNGC 8 cut(s) 121, 218, 221, 224, 227, 230, 688, 711
FspBI CTAG 6 cut(s) 72, 249, 264, 714, 819, 1149
GlaI GCGC 1 cut(s) 691
GluI GCNGC 8 cut(s) 121, 218, 221, 224, 227, 230, 688, 711
HaeIII GGCC 3 cut(s) 445, 1052, 1222
HapII CCGG 1 cut(s) 734
HhaI GCGC 1 cut(s) 692
Hin1II CATG 3 cut(s) 443, 629, 657
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HindIII AAGCTT 1 cut(s) 1241
HinfI GANTC 8 cut(s) 85, 400, 506, 598, 737, 1016, 1105, 1267
HpaII CCGG 1 cut(s) 734
HphI GGTGA 2 cut(s) 170, 449
Hpy188I TCNGA 5 cut(s) 15, 279, 696, 931, 1128
Hpy188III TCNNGA 4 cut(s) 50, 194, 428, 1064
HpyAV CCTTC 5 cut(s) 378, 794, 867, 1257, 1292
HpyCH4III ACNGT 2 cut(s) 517, 1139
HpyCH4V TGCA 5 cut(s) 123, 347, 857, 1142, 1195
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 223, 226, 229, 684, 1201
HpyF3I CTNAG 6 cut(s) 12, 234, 492, 602, 918, 1271
Hsp92II CATG 3 cut(s) 443, 629, 657
HspAI GCGC 1 cut(s) 690
Ksp22I TGATCA 2 cut(s) 454, 718
Kzo9I GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
LmnI GCTCC 2 cut(s) 27, 697
Lsp1109I GCAGC 4 cut(s) 107, 213, 216, 697
LweI GCATC 1 cut(s) 283
MaeI CTAG 6 cut(s) 72, 249, 264, 714, 819, 1149
MaeIII GTNAC 2 cut(s) 77, 970
MalI GATC 9 cut(s) 48, 281, 314, 438, 456, 503, 664, 720, 933
MboI GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
MboII GAAGA 6 cut(s) 158, 431, 602, 822, 989, 1167
MlsI TGGCCA 1 cut(s) 1052
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 2 cut(s) 607, 1261
MmeI TCCRAC 1 cut(s) 808
Mox20I TGGCCA 1 cut(s) 1052
MroXI GAANNNNTTC 3 cut(s) 423, 1174, 1244
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 30, 734
Mva1269I GAATGC 1 cut(s) 771
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 6 cut(s) 129, 223, 226, 229, 684, 1201
NciI CCSGG 1 cut(s) 734
NdeII GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
NlaIII CATG 3 cut(s) 443, 629, 657
NlaIV GGNNCC 2 cut(s) 304, 1203
NmuCI GTSAC 2 cut(s) 77, 970
NspV TTCGAA 1 cut(s) 1079
PceI AGGCCT 1 cut(s) 1222
PctI GAATGC 1 cut(s) 771
PdmI GAANNNNTTC 3 cut(s) 423, 1174, 1244
PfeI GAWTC 6 cut(s) 85, 400, 506, 737, 1016, 1105
PflMI CCANNNNNTGG 2 cut(s) 481, 1164
PfoI TCCNGGA 1 cut(s) 732
PkrI GCNGC 8 cut(s) 122, 219, 222, 225, 228, 231, 689, 712
PleI GAGTC 2 cut(s) 606, 1261
PpsI GAGTC 2 cut(s) 606, 1261
PpuMI RGGWCCY 1 cut(s) 303
PsiI TTATAA 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 304, 1203
PspPI GGNCC 2 cut(s) 303, 443
PspPPI RGGWCCY 1 cut(s) 303
PstI CTGCAG 1 cut(s) 1197
PstNI CAGNNNCTG 1 cut(s) 1025
RsaI GTAC 4 cut(s) 470, 835, 987, 1095
RsaNI GTAC 4 cut(s) 469, 834, 986, 1094
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 8 cut(s) 121, 218, 221, 224, 227, 230, 688, 711
Sau3AI GATC 9 cut(s) 46, 279, 312, 436, 454, 501, 662, 718, 931
Sau96I GGNCC 2 cut(s) 303, 443
ScaI AGTACT 1 cut(s) 1095
SchI GAGTC 2 cut(s) 607, 1261
ScrFI CCNGG 2 cut(s) 30, 734
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 1193
SfuI TTCGAA 1 cut(s) 1079
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SpeI ACTAGT 2 cut(s) 71, 818
SseBI AGGCCT 1 cut(s) 1222
SsiI CCGC 8 cut(s) 215, 218, 221, 224, 370, 416, 688, 956
SspMI CTAG 6 cut(s) 72, 249, 264, 714, 819, 1149
StuI AGGCCT 1 cut(s) 1222
StyD4I CCNGG 2 cut(s) 28, 732
TaaI ACNGT 2 cut(s) 517, 1139
TaqI TCGA 5 cut(s) 365, 504, 740, 1079, 1253
TatI WGTACW 2 cut(s) 985, 1093
TauI GCSGC 4 cut(s) 220, 223, 226, 690
TfiI GAWTC 6 cut(s) 85, 400, 506, 737, 1016, 1105
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 4 cut(s) 859, 1011, 1026, 1144
TseFI GTSAC 2 cut(s) 77, 970
TseI GCWGC 4 cut(s) 120, 226, 229, 710
Tsp45I GTSAC 2 cut(s) 77, 970
TspDTI ATGAA 2 cut(s) 69, 1229
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 4 cut(s) 859, 1011, 1026, 1144
Van91I CCANNNNNTGG 2 cut(s) 481, 1164
VpaK11BI GGWCC 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 1234
XapI RAATTY 5 cut(s) 146, 178, 784, 1035, 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmnI GAANNNNTTC 3 cut(s) 423, 1174, 1244
XspI CTAG 6 cut(s) 72, 249, 264, 714, 819, 1149
ZrmI AGTACT 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.