Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8364489.1

Orthogroup ID

OG0005653

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 270

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8364489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

aggctctgcaacttggcccgaggaaaaccttcctcagtgggattcaccagttgcaggagaggaagatgatcagtggcaatacaaagaccaacaccatcaccaccacaataaagctcacaaccacttgacgaaatcagaaacgtgggggcttgtcattgtaactgcgggatgggatggaaaaatcaggacattccataactatggattgccggtcagcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

73

Amino Acids

8.44

Weight (kDa)

5.82

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48870 AT1G48870 AT1G48870
fragaria_vesca	FvH4_1g24010 FvH4_1g24010
malus_domestica	MD01G1011600.v1.1 MD15G1338300.v1.1 MD15G1338400.v1.1
prunus_persica	Prupe.6G159500_v2.0.a1
pyrus_communis	pycom01g04160
rosa_chinensis	RchiOBHm_Chr2g0120151
rosa_laevigata	RLG00000018526 RLG00000020843 RLG00000027801 RLG00000035164
rosa_multiflora	Rmu_co8333869.1_g000001 Rmu_co8364489.1_g000001 Rmu_sc0015469.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123670 Rroxscaffold_7G00185390
rosa_rugosa	Rorug02G0227100.1 Rorug02G0227200
rosa_samantha	Rh2AG283800 Rh2BG295100 Rh2CG272500 Rh2DG308800
rosa_wichuraiana	Rw2G022730 Rw5G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	54
AluBI	AGCT	2 cut(s)	114, 217
AluI	AGCT	2 cut(s)	114, 217
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	37, 90
AvaI	CYCGRG	1 cut(s)	18
BccI	CCATC	3 cut(s)	103, 163, 168
BclI	TGATCA	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	174, 179
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	54
BsnI	GGCC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	174, 179
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	174, 179
BtsIMutI	CAGTG	2 cut(s)	42, 78
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	16
CviJI	RGCY	5 cut(s)	4, 17, 114, 149, 217
CviKI_1	RGCY	5 cut(s)	4, 17, 114, 149, 217
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	18
FaiI	YATR	2 cut(s)	196, 202
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	68
FokI	GGATG	2 cut(s)	181, 186
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	210
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	37, 90
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	9, 54
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	68
LpnPI	CCDG	3 cut(s)	40, 61, 170
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	75
MnlI	CCTC	3 cut(s)	14, 43, 53
MroXI	GAANNNNTTC	1 cut(s)	28
MslI	CAYNNNNRTG	1 cut(s)	199
MspI	CCGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	4 cut(s)	31, 116, 144, 219
SmiMI	CAYNNNNRTG	1 cut(s)	199
SsiI	CCGC	1 cut(s)	165
TaiI	ACGT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	2 cut(s)	42, 78
TspRI	CASTG	2 cut(s)	42, 78
XmnI	GAANNNNTTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.