Rw5G023580

Rab GTPase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005653
Physical Location & Seq
Reverse (-)
33295806 .. 33296320
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023580.1

Sequence Viewer

Length: 369 bp
ATGAGAATTTCAATTATGATCAAGTGTATATCCATGTTCTTTTATATAACAAGGAGTTGGGTTAATTTTGATGATATGCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGCGACCAAGAGTTGTTTAAAAATGTTTGGCCATAATGATTATGTAACTTGCATACAGTTCAATCCTTTAGACGACAGTGTTTTTCTCAGCGGCTCCCTTGAAGCGAAGTTTCGATTATGGAACATACCTGATCGAAGAGTGGTAGATTGGACTGATCTTCATGAACTGGTCACTGCTGCATGCTATACTCCAGAAGGCCAATTAACAGTTGACTTTGGTGGAAAAATAATATGCTTCTAG

Protein Analysis

122

Amino Acids

14.2

Weight (kDa)

5.55

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 22 - 111 4.3e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 24 - 85 1.6e-10 WDR3 first beta-propeller domain
Beta-prop_WDR75_1st PF23869 24 - 91 3.9e-06 WD repeat-containing protein 75 first beta-propeller
Beta-prop_WDR5 PF25175 25 - 112 4.6e-16 WDR5 beta-propeller domain
WD40_Prp19 PF24814 25 - 111 1.9e-08 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 25 - 92 7.6e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 25 - 108 1.1e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 25 - 85 6.2e-06 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 27 - 111 1.6e-12 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 27 - 111 2.5e-09 Aladin seven-bladed propeller
Beta-prop_WDR90_POC16_2nd PF23393 30 - 111 5.4e-06 WDR90/POC16, second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 6
AgsI TTSAA 4 cut(s) 12, 99, 190, 230
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AoxI GGCC 2 cut(s) 157, 325
ApeKI GCWGC 2 cut(s) 79, 305
ApoI RAATTY 1 cut(s) 6
BalI TGGCCA 1 cut(s) 159
BbvI GCAGC 2 cut(s) 91, 292
BclI TGATCA 1 cut(s) 18
BfaI CTAG 1 cut(s) 367
BisI GCNGC 3 cut(s) 80, 220, 306
BlsI GCNGC 3 cut(s) 81, 221, 307
BmiI GGNNCC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 91, 292
BshFI GGCC 2 cut(s) 159, 327
BsnI GGCC 2 cut(s) 159, 327
Bsp143I GATC 3 cut(s) 18, 259, 283
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 159, 327
BspCNI CTCAG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 300
BssMI GATC 3 cut(s) 18, 259, 283
Bst4CI ACNGT 4 cut(s) 112, 186, 206, 337
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 3 cut(s) 21, 262, 286
BstMBI GATC 3 cut(s) 18, 259, 283
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 91, 292
BsuRI GGCC 2 cut(s) 159, 327
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 211, 300
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 289
CviAII CATG 3 cut(s) 34, 290, 309
CviJI RGCY 4 cut(s) 82, 159, 222, 327
CviKI_1 RGCY 4 cut(s) 82, 159, 222, 327
DdeI CTNAG 1 cut(s) 215
DpnI GATC 3 cut(s) 20, 261, 285
DpnII GATC 3 cut(s) 18, 259, 283
DraI TTTAAA 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
FaeI CATG 3 cut(s) 37, 293, 312
FatI CATG 3 cut(s) 33, 289, 308
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 80, 220, 306
Fsp4HI GCNGC 3 cut(s) 80, 220, 306
FspBI CTAG 1 cut(s) 367
GluI GCNGC 3 cut(s) 80, 220, 306
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 159, 327
Hin1II CATG 3 cut(s) 37, 293, 312
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 290, 320
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 4 cut(s) 112, 186, 206, 337
HpyCH4V TGCA 3 cut(s) 79, 180, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 3 cut(s) 37, 293, 312
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 259, 283
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 3 cut(s) 270, 281, 333
Lsp1109I GCAGC 2 cut(s) 91, 292
MaeI CTAG 1 cut(s) 367
MaeIII GTNAC 2 cut(s) 172, 298
MalI GATC 3 cut(s) 20, 261, 285
MboI GATC 3 cut(s) 18, 259, 283
MboII GAAGA 3 cut(s) 87, 276, 278
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 6, 12, 64, 329
MluNI TGGCCA 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 3 cut(s) 63, 146, 332
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 3 cut(s) 18, 259, 283
NlaIII CATG 3 cut(s) 37, 293, 312
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 312
PaeI GCATGC 1 cut(s) 312
PagI TCATGA 1 cut(s) 289
PkrI GCNGC 3 cut(s) 81, 221, 307
PspN4I GGNNCC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 63, 146, 332
SatI GCNGC 3 cut(s) 80, 220, 306
Sau3AI GATC 3 cut(s) 18, 259, 283
SetI ASST 2 cut(s) 84, 259
SphI GCATGC 1 cut(s) 312
Sse9I AATT 4 cut(s) 6, 12, 64, 329
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 367
TaaI ACNGT 4 cut(s) 112, 186, 206, 337
TaqI TCGA 2 cut(s) 241, 262
TasI AATT 4 cut(s) 6, 12, 64, 329
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 3 cut(s) 63, 146, 332
Tru9I TTAA 3 cut(s) 63, 146, 332
TscAI CASTG 2 cut(s) 211, 307
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 79, 305
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 81, 278, 306
TspRI CASTG 2 cut(s) 211, 307
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 312
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.