Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

22521794 .. 22526993

Gene Structure 5200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1188900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGTTAGCTTCTTCCAGGCCCCTCTTCAGAGTGGATCGGTTTCTGAAATTTACAACTGCATATGATGCACTGAAGCCAGTAAATTGCTTCCTAGGACACTGTGAGTATCGCGGTTTGAGTTACAATATCGAAATGAGTGGTAGAAAAGATAAGCAAACTGTCGGGGACCGTAACAAAAAGCTCAGAACAACTAATGCTGTGTGGAGACCAGTCAGTACTCAAGCTAGTTCCAATGAAGAATGCTCTGTGAAGGAGGTCACAGAAAAGCTGGAATCTGAAACTCAAGTGCAAGAAGTGCACGAATGCACTTCTACGAGAATTTCAAGTTTGGAGAATGTCATAGAGGTGGCTGCAACTAACCTCGATGCTGGTTCCAGTGCATCACAAGATACTGGAGAAGATAAAGTCTTTGGAGGAGAGCAAGTGGTTTCTACTGAAAAGCATTCAATTTCAGTTGAGGTTGGTGCTTCTTTGTTTCGCTTTGTCAGAGGAAAATGGGGATTGACACAGAAACAGATTGAGGACGAGATGGGAGTTAAAATTAGAATCCCTTTGTCAAGGGAGGAGGATTCACTAACTATTGAAGGCAATTCAGTTGAAAGTATATCTAGAGCTTCTGAGAAGATAAAATCTATAGTTGACCAGGCAGTTAAAAGCTCAAATCTCGATTATTCTCACTTCATTTCACTTCCATTGGCAATACATCCTGAATTAGTTGATAAGCTCGTCAACTTTCAGAACTCAATCCTGGGAATTAGTGATTCTGGTGTAGATGATAATCTGGATAGTAATTCAAATGAAGAGAATTCTGAGAGTGAAGGTGAAGACCAAAGACCCGATGTCGCAGTTGAACTTAAAGTTGAAGGTGACCGTCAACATGTTAAAGTGAATCTAACCAACATACCTCTTGTCAGTTATGCGCTTCAATCATCAAAGGCGGCTACCCTATCTGACTTGGGGATTGAAAAGTCAATATTCATTAAACCAAAAACGTTTCACTTAACTGTGCTTATGCTGAAGTTGTGGAACAAGGACCGAGTTCATGCTGCTACTGAGGTTTTGCAGAGAATCTCTTCAAAAGTGATTGAAGCCTTAGATAATCGCCCTGTCTCCATAAGACTGAAGGGACTGAATTGTATGAGAGGTTCTTTGGCCAAAGCTGGTGTTGTCTATGCTCCAGTTGAAGAAATTGGCAGTGAGGGACGACTTCTGCGTGCCTGTCAAGTCATCATCGATGCATATATTGAAGCCGGGCTTGTTTTAGAGAAAGATGCTAAACAGAAATTAAAGTTGCATGCAACCGTGATGAATGCAAGGCACAGCAAAAGGAAGAAGGGAACGAGAAAGGTTAATTCCTTTGATGCGCGTGGCATTTTCAAGCAATATGGATCGGAGGAATGGGGAGAGTATCTTATCCGAGAAGCTCATCTTTCACAGAGGTTTGTGTTTGATGACAAAGGATATTACCATTGTTGTGCCTCTATGCCTTTTCCTGAAATATGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

503

Amino Acids

56.0

Weight (kDa)

6.5

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	150 - 210	1.5e-07	KH domain
AKAP7_NLS	PF10469	317 - 497	3.4e-47	AKAP7 2'5' RNA ligase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 1366
AciI	CCGC	2 cut(s)	111, 938
AclI	AACGTT	1 cut(s)	992
AclWI	GGATC	2 cut(s)	42, 1396
AcoI	YGGCCR	1 cut(s)	1152
AcsI	RAATTY	3 cut(s)	47, 318, 805
AcuI	CTGAAG	4 cut(s)	10, 92, 1037, 1142
AfaI	GTAC	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	877
AhdI	GACNNNNNGTC	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	14, 642, 747
AluBI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1160, 1424
AluI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1160, 1424
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	199, 1114
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	42, 1396
AoxI	GGCC	2 cut(s)	17, 1152
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	350, 1046
ApoI	RAATTY	3 cut(s)	47, 318, 805
Asp700I	GAANNNNTTC	1 cut(s)	1072
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	922, 1366
AspS9I	GGNCC	3 cut(s)	18, 166, 1033
AsuC2I	CCSGG	1 cut(s)	1252
AsuHPI	GGTGA	2 cut(s)	833, 878
AvaII	GGWCC	2 cut(s)	166, 1033
AvrII	CCTAGG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	1154
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	337, 1033
BccI	CCATC	1 cut(s)	523
BciT130I	CCWGG	3 cut(s)	16, 644, 749
BcnI	CCSGG	1 cut(s)	1252
BcoDI	GTCTC	2 cut(s)	199, 1114
BfaI	CTAG	3 cut(s)	92, 225, 609
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	3 cut(s)	351, 939, 1047
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	3 cut(s)	352, 940, 1048
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	16, 644, 749, 1252
Bme18I	GGWCC	2 cut(s)	166, 1033
BmeRI	GACNNNNNGTC	1 cut(s)	839
BmgT120I	GGNCC	3 cut(s)	18, 166, 1033
BmiI	GGNNCC	3 cut(s)	20, 167, 373
BmrFI	CCNGG	4 cut(s)	16, 644, 749, 1252
BmsI	GCATC	6 cut(s)	55, 355, 389, 1225, 1261, 1351
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	2 cut(s)	414, 1161
BpuEI	CTTGAG	2 cut(s)	204, 267
BpuMI	CCSGG	1 cut(s)	1252
Bsa29I	ATCGAT	1 cut(s)	1233
BsaBI	GATNNNNATC	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	91, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse1I	ACTGG	5 cut(s)	77, 209, 375, 397, 1178
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	3 cut(s)	16, 644, 749
BseCI	ATCGAT	1 cut(s)	1233
BseDI	CCNNGG	2 cut(s)	91, 748
BseGI	GGATG	1 cut(s)	703
BseJI	GATNNNNATC	1 cut(s)	777
BseMII	CTCAG	4 cut(s)	196, 609, 801, 1044
BseNI	ACTGG	5 cut(s)	77, 209, 375, 397, 1178
BseRI	GAGGAG	2 cut(s)	429, 578
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	337, 1033
Bsh1236I	CGCG	2 cut(s)	111, 1366
BshFI	GGCC	2 cut(s)	19, 1154
BshVI	ATCGAT	1 cut(s)	1233
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	1251
BslFI	GGGAC	3 cut(s)	179, 1140, 1215
BsmAI	GTCTC	2 cut(s)	199, 1114
BsmFI	GGGAC	3 cut(s)	179, 1140, 1215
BsmI	GAATGC	4 cut(s)	245, 308, 442, 1315
BsnI	GGCC	2 cut(s)	19, 1154
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	34, 1388
BspACI	CCGC	2 cut(s)	111, 938
BspANI	GGCC	2 cut(s)	19, 1154
BspCNI	CTCAG	4 cut(s)	195, 610, 802, 1045
BspDI	ATCGAT	1 cut(s)	1233
BspFNI	CGCG	2 cut(s)	111, 1366
BspLI	GGNNCC	3 cut(s)	20, 167, 373
BspPI	GGATC	2 cut(s)	42, 1396
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	5 cut(s)	77, 209, 375, 397, 1178
BssECI	CCNNGG	2 cut(s)	91, 748
BssMI	GATC	2 cut(s)	34, 1388
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	16, 644, 749
Bst4CI	ACNGT	6 cut(s)	101, 160, 170, 872, 1006, 1303
Bst6I	CTCTTC	3 cut(s)	29, 795, 1078
BstAPI	GCANNNNNTGC	2 cut(s)	65, 295
BstC8I	GCNNGC	2 cut(s)	1215, 1296
BstDEI	CTNAG	5 cut(s)	182, 618, 810, 1053, 1093
BstEII	GGTNACC	1 cut(s)	866
BstF5I	GGATG	1 cut(s)	703
BstFNI	CGCG	2 cut(s)	111, 1366
BstHHI	GCGC	2 cut(s)	922, 1366
BstKTI	GATC	2 cut(s)	37, 1391
BstMAI	GTCTC	2 cut(s)	199, 1114
BstMBI	GATC	2 cut(s)	34, 1388
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 295
BstNI	CCWGG	3 cut(s)	16, 644, 749
BstNSI	RCATGY	2 cut(s)	881, 1298
BstPI	GGTNACC	1 cut(s)	866
BstSCI	CCNGG	4 cut(s)	14, 642, 747, 1250
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	2 cut(s)	111, 1366
BstV1I	GCAGC	2 cut(s)	337, 1033
BstV2I	GAAGAC	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	1233
BsuRI	GGCC	2 cut(s)	19, 1154
BsuTUI	ATCGAT	1 cut(s)	1233
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	1201
BtsIMutI	CAGTG	4 cut(s)	68, 97, 382, 1201
Cac8I	GCNNGC	2 cut(s)	1215, 1296
CfoI	GCGC	2 cut(s)	922, 1366
Cfr13I	GGNCC	3 cut(s)	18, 166, 1033
ClaI	ATCGAT	1 cut(s)	1233
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	878, 1043, 1295
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	5 cut(s)	182, 618, 810, 1053, 1093
DpnI	GATC	2 cut(s)	36, 1390
DpnII	GATC	2 cut(s)	34, 1388
DriI	GACNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	1152
Eam1104I	CTCTTC	3 cut(s)	29, 795, 1078
Eam1105I	GACNNNNNGTC	1 cut(s)	839
EarI	CTCTTC	3 cut(s)	29, 795, 1078
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	166, 1033
Eco57I	CTGAAG	4 cut(s)	10, 92, 1037, 1142
Eco91I	GGTNACC	1 cut(s)	866
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	3 cut(s)	14, 642, 747
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	1240
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	881, 1046, 1298
FalI	AAGNNNNNCTT	4 cut(s)	1239, 1271, 1413, 1445
FaqI	GGGAC	3 cut(s)	179, 1140, 1215
FatI	CATG	3 cut(s)	877, 1042, 1294
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	351, 939, 1047
FokI	GGATG	1 cut(s)	690
Fsp4HI	GCNGC	3 cut(s)	351, 939, 1047
FspBI	CTAG	3 cut(s)	92, 225, 609
GlaI	GCGC	2 cut(s)	921, 1365
GluI	GCNGC	3 cut(s)	351, 939, 1047
GsuI	CTGGAG	2 cut(s)	414, 1161
HaeIII	GGCC	2 cut(s)	19, 1154
HapII	CCGG	1 cut(s)	1251
HhaI	GCGC	2 cut(s)	922, 1366
Hin1II	CATG	3 cut(s)	881, 1046, 1298
Hin6I	GCGC	2 cut(s)	920, 1364
HinP1I	GCGC	2 cut(s)	920, 1364
HincII	GTYRAC	3 cut(s)	640, 730, 875
HindII	GTYRAC	3 cut(s)	640, 730, 875
HinfI	GANTC	6 cut(s)	272, 546, 569, 761, 889, 1068
HpaII	CCGG	1 cut(s)	1251
HphI	GGTGA	2 cut(s)	833, 878
Hpy166II	GTNNAC	4 cut(s)	298, 640, 730, 875
Hpy188III	TCNNGA	5 cut(s)	609, 665, 707, 782, 1493
Hpy8I	GTNNAC	4 cut(s)	298, 640, 730, 875
HpyAV	CCTTC	6 cut(s)	244, 578, 812, 857, 1117, 1327
HpyCH4III	ACNGT	6 cut(s)	101, 160, 170, 872, 1006, 1303
HpyCH4IV	ACGT	1 cut(s)	992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 295
HpyF3I	CTNAG	5 cut(s)	182, 618, 810, 1053, 1093
HpySE526I	ACGT	1 cut(s)	992
Hsp92II	CATG	3 cut(s)	881, 1046, 1298
HspAI	GCGC	2 cut(s)	920, 1364
Kzo9I	GATC	2 cut(s)	34, 1388
LmnI	GCTCC	1 cut(s)	1180
Lsp1109I	GCAGC	2 cut(s)	337, 1033
LweI	GCATC	6 cut(s)	55, 355, 389, 1225, 1261, 1351
MaeI	CTAG	3 cut(s)	92, 225, 609
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	4 cut(s)	119, 170, 256, 866
MalI	GATC	2 cut(s)	36, 1390
MboI	GATC	2 cut(s)	34, 1388
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	1154
MluNI	TGGCCA	1 cut(s)	1154
Mox20I	TGGCCA	1 cut(s)	1154
Mph1103I	ATGCAT	1 cut(s)	1240
MroXI	GAANNNNTTC	1 cut(s)	1072
MscI	TGGCCA	1 cut(s)	1154
MseI	TTAA	8 cut(s)	537, 651, 855, 882, 981, 1001, 1286, 1350
MslI	CAYNNNNRTG	2 cut(s)	344, 1473
Msp20I	TGGCCA	1 cut(s)	1154
MspI	CCGG	1 cut(s)	1251
MspR9I	CCNGG	4 cut(s)	16, 644, 749, 1252
Mva1269I	GAATGC	4 cut(s)	245, 308, 442, 1315
MvaI	CCWGG	3 cut(s)	16, 644, 749
MvnI	CGCG	2 cut(s)	111, 1366
MwoI	GCNNNNNNNGC	2 cut(s)	65, 295
NciI	CCSGG	1 cut(s)	1252
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	34, 1388
NlaIII	CATG	3 cut(s)	881, 1046, 1298
NlaIV	GGNNCC	3 cut(s)	20, 167, 373
NmuCI	GTSAC	2 cut(s)	256, 866
NsiI	ATGCAT	1 cut(s)	1240
NspI	RCATGY	2 cut(s)	881, 1298
PaeI	GCATGC	1 cut(s)	1298
PciI	ACATGT	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	1210
PctI	GAATGC	4 cut(s)	245, 308, 442, 1315
PdmI	GAANNNNTTC	1 cut(s)	1072
PfeI	GAWTC	6 cut(s)	272, 546, 569, 761, 889, 1068
PkrI	GCNGC	3 cut(s)	352, 940, 1048
PscI	ACATGT	1 cut(s)	877
Psp1406I	AACGTT	1 cut(s)	992
Psp6I	CCWGG	3 cut(s)	14, 642, 747
PspEI	GGTNACC	1 cut(s)	866
PspGI	CCWGG	3 cut(s)	14, 642, 747
PspN4I	GGNNCC	3 cut(s)	20, 167, 373
PspPI	GGNCC	3 cut(s)	18, 166, 1033
PsrI	GAACNNNNNNTAC	2 cut(s)	1129, 1161
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	344, 1473
SaqAI	TTAA	8 cut(s)	537, 651, 855, 882, 981, 1001, 1286, 1350
SatI	GCNGC	3 cut(s)	351, 939, 1047
Sau3AI	GATC	2 cut(s)	34, 1388
Sau96I	GGNCC	3 cut(s)	18, 166, 1033
ScaI	AGTACT	1 cut(s)	217
ScrFI	CCNGG	4 cut(s)	16, 644, 749, 1252
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	6 cut(s)	55, 355, 389, 1225, 1261, 1351
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	2 cut(s)	166, 1033
SmiMI	CAYNNNNRTG	2 cut(s)	344, 1473
SmlI	CTYRAG	2 cut(s)	219, 282
SmoI	CTYRAG	2 cut(s)	219, 282
SphI	GCATGC	1 cut(s)	1298
SsiI	CCGC	2 cut(s)	111, 938
SspI	AATATT	1 cut(s)	975
SspMI	CTAG	3 cut(s)	92, 225, 609
StyD4I	CCNGG	4 cut(s)	14, 642, 747, 1250
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	6 cut(s)	101, 160, 170, 872, 1006, 1303
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	4 cut(s)	129, 363, 666, 1233
TaqII	GACCGA	1 cut(s)	1050
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	941
TfiI	GAWTC	6 cut(s)	272, 546, 569, 761, 889, 1068
Tru1I	TTAA	8 cut(s)	537, 651, 855, 882, 981, 1001, 1286, 1350
Tru9I	TTAA	8 cut(s)	537, 651, 855, 882, 981, 1001, 1286, 1350
TscAI	CASTG	4 cut(s)	75, 104, 382, 1201
TseFI	GTSAC	2 cut(s)	256, 866
TseI	GCWGC	2 cut(s)	350, 1046
Tsp45I	GTSAC	2 cut(s)	256, 866
TspDTI	ATGAA	6 cut(s)	249, 670, 813, 967, 1031, 1322
TspRI	CASTG	4 cut(s)	75, 104, 382, 1201
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	166, 1033
XapI	RAATTY	3 cut(s)	47, 318, 805
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	2 cut(s)	881, 1298
XmaJI	CCTAGG	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	1072
XspI	CTAG	3 cut(s)	92, 225, 609
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.