Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

10919854 .. 10920592

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGTGCTATAACATCACTGGCCATCAATGTATCAGAAGACATCCTATACTCAGCTTCCATTGACAGAACAGTCAAAGTATGGAGAATTTCAGACCTAAAATCTGATGATGGCGTGCTCTACACGGCCTCAGACGATGCCACAGTCCGAGTGTGGCGCCGTAACTTCTGGCGTGGAGACCAGCTTCCTCATTCACTCACTGTAACTTTACCCACCAAGAATTCCCCCGTCAAAACCCTAACCCTAACCCCAGATAGCGGAGTTTTGTACGGCGGGTGCACTGATGGGTACATACACTATTGGCTCAAGGGTTGGTTCTCTGGCCAATTACAGTATGGGGGTGCACTCCAAGGTCACACCCATGCAGTGATGTGCTTGGCCAGCGTGGCCAACTACGTGGTCAGTGGGTCAGCAGACTCCACAAGTAGGATTTGGTCTAGAGATGTGGAAGATGGTCAGCACACTTGCCTGGCAGTGCTCGTAGGGCATAGAGGGCCGATCAGATGTGTCACCGCGTTTTCCGGAAGATTAGGGGATGAGGCCGAGGAGGGTTGCACGATTTGTACTGGAAGTCTTGACGGTGTTCTTAAAGTGTGGCGTGTAGTCGAAGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

206

Amino Acids

22.37

Weight (kDa)

6.04

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	156
AccII	CGCG	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	521
AciI	CCGC	3 cut(s)	258, 273, 513
AcoI	YGGCCR	4 cut(s)	21, 322, 378, 387
AcsI	RAATTY	2 cut(s)	87, 220
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	3 cut(s)	269, 290, 565
AfiI	CCNNNNNNNGG	2 cut(s)	257, 426
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	2 cut(s)	56, 184
AluI	AGCT	2 cut(s)	56, 184
Alw21I	GWGCWC	4 cut(s)	120, 281, 346, 480
Alw26I	GTCTC	1 cut(s)	171
Alw44I	GTGCAC	2 cut(s)	277, 342
Aor13HI	TCCGGA	1 cut(s)	521
AoxI	GGCC	7 cut(s)	21, 126, 322, 378, 387, 494, 540
ApaLI	GTGCAC	2 cut(s)	277, 342
ApoI	RAATTY	2 cut(s)	87, 220
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	502
BaeGI	GKGCMC	2 cut(s)	281, 346
BalI	TGGCCA	4 cut(s)	23, 324, 380, 389
BanI	GGYRCC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	4 cut(s)	120, 281, 346, 480
BccI	CCATC	4 cut(s)	32, 104, 278, 446
BceAI	ACGGC	3 cut(s)	141, 144, 286
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	349, 543
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 426
Bse1I	ACTGG	2 cut(s)	24, 571
BseAI	TCCGGA	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	349, 543
BseGI	GGATG	2 cut(s)	42, 541
BseLI	CCNNNNNNNGG	2 cut(s)	257, 426
BseMII	CTCAG	2 cut(s)	66, 144
BseNI	ACTGG	2 cut(s)	24, 571
BseRI	GAGGAG	1 cut(s)	560
BseSI	GKGCMC	2 cut(s)	281, 346
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	7 cut(s)	23, 128, 324, 380, 389, 496, 542
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	4 cut(s)	120, 281, 346, 480
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	257, 426
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	7 cut(s)	23, 128, 324, 380, 389, 496, 542
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	120, 281, 346, 480
Bsp13I	TCCGGA	1 cut(s)	521
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	3 cut(s)	258, 273, 513
BspANI	GGCC	7 cut(s)	23, 128, 324, 380, 389, 496, 542
BspCNI	CTCAG	2 cut(s)	65, 143
BspEI	TCCGGA	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	24, 571
BssECI	CCNNGG	2 cut(s)	349, 543
BssMI	GATC	1 cut(s)	498
BssNI	GRCGYC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	5 cut(s)	73, 145, 202, 333, 581
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	116, 382
BstDEI	CTNAG	2 cut(s)	52, 130
BstF5I	GGATG	2 cut(s)	42, 541
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	4 cut(s)	381, 386, 484, 493
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstSLI	GKGCMC	2 cut(s)	281, 346
BstUI	CGCG	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	397
BsuRI	GGCC	7 cut(s)	23, 128, 324, 380, 389, 496, 542
BtsCI	GGATG	2 cut(s)	42, 541
BtsI	GCAGTG	2 cut(s)	372, 480
BtsIMutI	CAGTG	6 cut(s)	17, 198, 279, 372, 409, 480
Cac8I	GCNNGC	2 cut(s)	116, 382
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	3 cut(s)	268, 289, 564
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	3 cut(s)	268, 289, 564
DdeI	CTNAG	2 cut(s)	52, 130
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	4 cut(s)	21, 322, 378, 387
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	349
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	365
FaiI	YATR	7 cut(s)	11, 49, 82, 293, 336, 363, 489
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	266
FokI	GGATG	2 cut(s)	29, 548
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	7 cut(s)	23, 128, 324, 380, 389, 496, 542
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	279, 344
Hpy188I	TCNGA	6 cut(s)	37, 94, 106, 133, 149, 503
Hpy188III	TCNNGA	3 cut(s)	438, 522, 575
Hpy8I	GTNNAC	2 cut(s)	279, 344
HpyCH4III	ACNGT	5 cut(s)	73, 145, 202, 333, 581
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	279, 344, 365, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	381, 386, 484, 493
HpyF3I	CTNAG	2 cut(s)	52, 130
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	157
KasI	GGCGCC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	521
Kzo9I	GATC	1 cut(s)	498
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	4 cut(s)	161, 202, 353, 508
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	50, 461, 537
MhlI	GDGCHC	4 cut(s)	120, 281, 346, 480
MlsI	TGGCCA	4 cut(s)	23, 324, 380, 389
MluCI	AATT	3 cut(s)	87, 220, 326
MluNI	TGGCCA	4 cut(s)	23, 324, 380, 389
Mly113I	GGCGCC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	139, 198, 485, 532, 538, 541, 606
Mox20I	TGGCCA	4 cut(s)	23, 324, 380, 389
MroI	TCCGGA	1 cut(s)	521
MscI	TGGCCA	4 cut(s)	23, 324, 380, 389
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	4 cut(s)	23, 324, 380, 389
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	4 cut(s)	381, 386, 484, 493
NarI	GGCGCC	1 cut(s)	157
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	353, 508
PleI	GAGTC	1 cut(s)	410
PluTI	GGCGCC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	494
RsaI	GTAC	3 cut(s)	269, 290, 565
RsaNI	GTAC	3 cut(s)	268, 289, 564
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	588
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	4 cut(s)	120, 281, 346, 480
SetI	ASST	6 cut(s)	58, 99, 186, 355, 399, 617
SfaNI	GCATC	1 cut(s)	127
SfiI	GGCCNNNNNGGCC	1 cut(s)	386
SfoI	GGCGCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	87, 220, 326
SsiI	CCGC	3 cut(s)	258, 273, 513
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	5 cut(s)	73, 145, 202, 333, 581
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	606
TasI	AATT	3 cut(s)	87, 220, 326
TatI	WGTACW	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	6 cut(s)	24, 205, 286, 372, 409, 480
TseFI	GTSAC	2 cut(s)	353, 508
Tsp45I	GTSAC	2 cut(s)	353, 508
TspRI	CASTG	6 cut(s)	24, 205, 286, 372, 409, 480
VneI	GTGCAC	2 cut(s)	277, 342
XapI	RAATTY	2 cut(s)	87, 220
XbaI	TCTAGA	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.