Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444769.1

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 701

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggcctcacaagactactctcccccaactccatcttttgcaacaaataaaaacaagttcttctccggcttcaccagaagcacatcaaccaaagaaccatccttctcacaatttccttatacaccgcctcgccataacaccaatgacgtctctccttccttctcccaaaccgaaagcctccacgcctccccaacctcctcccctcagttcatccctctcaaacaccccgacctcctcaccgcctaccgttgcatctcctccgtcctgaaaaaggacggccggatcttgtccatcaccgcctccagtggcctagtttactccggctcagataccaatgtcattagggtttggaagctacccgagttcacagaatgtgggcagctcaagaccaaagcttgcatggtggtggcactagaggtgtctcatgatagggtttatgctgcttatggtgatgggaaggtgagaatatggcagagaacatgggatggagggttgaagcatgagaggttggctacgattccgaagatcggaagttatgtccggagtttctacattgccgggaaagataagacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

191

Amino Acids

21.25

Weight (kDa)

9.54

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	3 cut(s)	125, 240, 297
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	271, 527
AgsI	TTSAA	1 cut(s)	496
AluBI	AGCT	3 cut(s)	355, 382, 395
AluI	AGCT	3 cut(s)	355, 382, 395
Alw26I	GTCTC	2 cut(s)	154, 426
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	3 cut(s)	3, 277, 307
ApeKI	GCWGC	2 cut(s)	379, 440
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	5 cut(s)	64, 229, 286, 461, 472
AvaI	CYCGRG	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BbvI	GCAGC	2 cut(s)	391, 427
BccI	CCATC	5 cut(s)	40, 106, 299, 446, 479
BceAI	ACGGC	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	154, 426
BfaI	CTAG	2 cut(s)	311, 413
BisI	GCNGC	2 cut(s)	380, 441
BlsI	GCNGC	2 cut(s)	381, 442
Bme1390I	CCNGG	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 527
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	540
BseGI	GGATG	3 cut(s)	98, 210, 490
BseLI	CCNNNNNNNGG	2 cut(s)	271, 527
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	218, 339
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	3 cut(s)	187, 224, 247
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	391, 427
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	5, 279, 309
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	5 cut(s)	66, 280, 321, 541, 558
BslI	CCNNNNNNNGG	2 cut(s)	271, 527
BsmAI	GTCTC	2 cut(s)	154, 426
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	5, 279, 309
BsoBI	CYCGRG	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	282, 525
BspACI	CCGC	3 cut(s)	125, 240, 297
BspANI	GGCC	3 cut(s)	5, 279, 309
BspCNI	CTCAG	2 cut(s)	217, 338
BspEI	TCCGGA	1 cut(s)	540
BspHI	TCATGA	1 cut(s)	424
BspPI	GGATC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	282, 525
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	2 cut(s)	204, 325
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	98, 210, 490
BstKTI	GATC	2 cut(s)	285, 528
BstMAI	GTCTC	2 cut(s)	154, 426
BstMBI	GATC	2 cut(s)	282, 525
BstMCI	CGRYCG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	391, 427
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	5, 279, 309
BtsCI	GGATG	3 cut(s)	98, 210, 490
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	397
CciI	TCATGA	1 cut(s)	424
CviAII	CATG	4 cut(s)	400, 425, 480, 500
DdeI	CTNAG	2 cut(s)	204, 325
DpnI	GATC	2 cut(s)	284, 527
DpnII	GATC	2 cut(s)	282, 525
EaeI	YGGCCR	1 cut(s)	277
EagI	CGGCCG	1 cut(s)	277
EclXI	CGGCCG	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	4 cut(s)	403, 428, 483, 503
FatI	CATG	4 cut(s)	399, 424, 479, 499
Fnu4HI	GCNGC	2 cut(s)	380, 441
FokI	GGATG	3 cut(s)	85, 197, 497
Fsp4HI	GCNGC	2 cut(s)	380, 441
FspBI	CTAG	2 cut(s)	311, 413
GluI	GCNGC	2 cut(s)	380, 441
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	5, 279, 309
HapII	CCGG	5 cut(s)	66, 280, 321, 541, 558
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	403, 428, 483, 503
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	5 cut(s)	66, 280, 321, 541, 558
HphI	GGTGA	5 cut(s)	64, 229, 286, 461, 472
Hpy166II	GTNNAC	2 cut(s)	316, 366
Hpy188I	TCNGA	3 cut(s)	328, 522, 530
Hpy188III	TCNNGA	4 cut(s)	265, 385, 425, 541
Hpy8I	GTNNAC	2 cut(s)	316, 366
HpyAV	CCTTC	4 cut(s)	112, 165, 169, 451
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	41, 252, 399
HpyF3I	CTNAG	2 cut(s)	204, 325
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	403, 428, 483, 503
Kpn2I	TCCGGA	1 cut(s)	540
Kzo9I	GATC	2 cut(s)	282, 525
LpnPI	CCDG	7 cut(s)	79, 88, 278, 293, 316, 334, 554
Lsp1109I	GCAGC	2 cut(s)	391, 427
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	311, 413
MaeII	ACGT	1 cut(s)	147
MalI	GATC	2 cut(s)	284, 527
MboI	GATC	2 cut(s)	282, 525
MboII	GAAGA	2 cut(s)	52, 535
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	1 cut(s)	110
MroI	TCCGGA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	5 cut(s)	66, 280, 321, 541, 558
MspR9I	CCNGG	1 cut(s)	559
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	2 cut(s)	282, 525
NlaIII	CATG	4 cut(s)	403, 428, 483, 503
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	381, 442
PsuI	RGATCY	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	2 cut(s)	380, 441
Sau3AI	GATC	2 cut(s)	282, 525
ScrFI	CCNGG	1 cut(s)	559
SetI	ASST	9 cut(s)	150, 197, 234, 357, 384, 397, 420, 462, 509
SfaNI	GCATC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	3 cut(s)	125, 240, 297
SspMI	CTAG	2 cut(s)	311, 413
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	150
TasI	AATT	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	517
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	379, 440
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	311, 413
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.