Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

28829522 .. 28833875

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATGGTAGAAGACATAAGCGAAGCGGTGTTGACCATAACAACAAGCTCAATCCCGTATGGAGACCAGTCAGTAAACTCAGTACACAAGTCAGTTCCAATGAAGAATGCTCAGTAGTGGAGGTTACGGATAAGCTGGAAGAAGAAGTGCACTCTTGCTCATCTACCAAGATTTCAAGTTCTCAAGATAACATAGAGATGGCTTCAGCAGTTACTGAAGCAACTAAGCTCACTACTTGTTCAAGTGCATCGCAAGATAATGAAGAGGATAAAGGTTTAGAAGGAGAAACAGTGCTTTTGTCCGAAAAGCATTCAATTTCAGTTGAGGTTGGGGCTTCTTTGCATCGCTTTATCGGAGGAAAAGGAGGATCTACTCAGAAAATGATTGAAGATGAGACAGGAGTGAAGATTAAAATCCCATTGTCAAAGAAAGAGGATTCCATTATTATTGAAGGACTCTCAAGTGAAAGCGTATCTAGAGCTTCAGAGAAGATACAAGCTATAATTGATGAGGCAGTGAAAAGCCCAAGTCTTGATTACTCTCACTTCATTTCACTTCCATTAGCAATACATCCTGAATTAGTTGATAAACTTGTCAACTTTCAGAACTCCATCCTAGGAATTACTGATTCTTCCCAGGGTGAGAATCTGGACAGTGGTTCGAATGAAGATGAAGATCAAAAGTTAAGGAAAGGATCTGATGTTGCAGTTGAACTTAAAGCTGAACCATCAAAGTCTTCTATCCTATCTGACTTGGGAATTGAGAAATCAATCTTTATTAAACCGAAAACATTTCACCTAACCGTGCTCATGTTGAAGTTGTGGAACAAGGACAGAGTTCATGCAGCTACTGAGGTTTTGCAGAGCATCTCTTCAGAAGTGATGGAAGCATTAGATAATCGCCCTCTATCCATAAGACTCAAGGGATTGAATTGTATGAGAGGTTCTTTTGCCAAAGCTGGTGTTCTATATGCGCCCGTTGAAGAAATTGGCAGTGAGGGCCGACTTTTGCGTGCCTGTCAAGTCATTATTGATGCATTTGTTAAAGCAGGGCTTGTTCTAGAGAAAGATGCTAATCAAAAATTAAAGCTCCATGCAACGGTGATGAATGCAAGGCATAGAAAAAGGAGGAATCAAAAGAGAAAATTTAGTACCTTTGATGCCCGTGGCATATATAAGCAGTATGGATCCGAGGATTGGGGAGAGTGTCTTATCCGTGAAGCTCATCTTTCACAAAGGTTTGTGTTTGATGACAAGGGATATTACCATTGTTGTGCTTCTATACCTTTTCCAGAAATATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

435

Amino Acids

48.15

Weight (kDa)

6.27

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	106 - 166	1.6e-11	KH domain
AKAP7_NLS	PF10469	180 - 430	7.4e-55	AKAP7 2'5' RNA ligase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	4 cut(s)	376, 703, 1182, 1195
AcsI	RAATTY	1 cut(s)	1145
AcuI	CTGAAG	4 cut(s)	189, 237, 468, 858
AfaI	GTAC	2 cut(s)	85, 1153
AfiI	CCNNNNNNNGG	2 cut(s)	1099, 1197
AgsI	TTSAA	9 cut(s)	177, 243, 315, 389, 452, 713, 817, 931, 983
AjnI	CCWGG	1 cut(s)	636
Alw21I	GWGCWC	2 cut(s)	153, 810
Alw26I	GTCTC	2 cut(s)	58, 389
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	4 cut(s)	376, 703, 1182, 1195
AlwNI	CAGNNNCTG	2 cut(s)	215, 851
AoxI	GGCC	1 cut(s)	1000
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	1 cut(s)	1145
AspA2I	CCTAGG	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	976
AspS9I	GGNCC	1 cut(s)	1000
AsuHPI	GGTGA	3 cut(s)	653, 788, 1114
AsuII	TTCGAA	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	1187
BbsI	GAAGAC	2 cut(s)	19, 729
Bbv12I	GWGCWC	2 cut(s)	153, 810
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	4 cut(s)	193, 620, 736, 877
BciT130I	CCWGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	58, 389
BfaI	CTAG	3 cut(s)	477, 617, 1061
BisI	GCNGC	1 cut(s)	846
BlnI	CCTAGG	1 cut(s)	616
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	1000
BmiI	GGNNCC	1 cut(s)	1189
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	6 cut(s)	257, 352, 876, 1024, 1060, 1150
BpiI	GAAGAC	2 cut(s)	19, 729
Bpu14I	TTCGAA	1 cut(s)	662
BpuEI	CTTGAG	3 cut(s)	168, 445, 905
BsaBI	GATNNNNATC	3 cut(s)	413, 675, 1074
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	616, 636, 637, 1165, 1191
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	1099, 1197
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	3 cut(s)	413, 675, 1074
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	5 cut(s)	616, 636, 637, 1165, 1191
BseGI	GGATG	3 cut(s)	10, 571, 612
BseJI	GATNNNNATC	3 cut(s)	413, 675, 1074
BseLI	CCNNNNNNNGG	2 cut(s)	1099, 1197
BseMII	CTCAG	4 cut(s)	94, 126, 389, 843
BseNI	ACTGG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	857
BshFI	GGCC	1 cut(s)	1002
BsiHKAI	GWGCWC	2 cut(s)	153, 810
BslI	CCNNNNNNNGG	2 cut(s)	1099, 1197
BsmAI	GTCTC	2 cut(s)	58, 389
BsmI	GAATGC	3 cut(s)	113, 310, 1114
BsnI	GGCC	1 cut(s)	1002
Bso31I	GGTCTC	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	153, 810
Bsp143I	GATC	4 cut(s)	368, 676, 695, 1187
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	1002
BspCNI	CTCAG	4 cut(s)	93, 125, 388, 844
BspLI	GGNNCC	1 cut(s)	1189
BspPI	GGATC	4 cut(s)	376, 703, 1182, 1195
BspT104I	TTCGAA	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	5 cut(s)	616, 636, 637, 1165, 1191
BssMI	GATC	4 cut(s)	368, 676, 695, 1187
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	4 cut(s)	292, 656, 805, 1102
Bst6I	CTCTTC	2 cut(s)	258, 877
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	5 cut(s)	80, 112, 225, 375, 852
BstDSI	CCRYGG	1 cut(s)	1165
BstF5I	GGATG	3 cut(s)	10, 571, 612
BstHHI	GCGC	1 cut(s)	976
BstKTI	GATC	4 cut(s)	371, 679, 698, 1190
BstMAI	GTCTC	2 cut(s)	58, 389
BstMBI	GATC	4 cut(s)	368, 676, 695, 1187
BstMWI	GCNNNNNNNGC	1 cut(s)	999
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	857
BstV2I	GAAGAC	2 cut(s)	19, 729
BstX2I	RGATCY	3 cut(s)	368, 695, 1187
BstYI	RGATCY	3 cut(s)	368, 695, 1187
BsuRI	GGCC	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	1165
BtgZI	GCGATG	2 cut(s)	234, 329
BtsCI	GGATG	3 cut(s)	10, 571, 612
BtsI	GCAGTG	2 cut(s)	522, 1000
BtsIMutI	CAGTG	4 cut(s)	297, 522, 661, 1000
Cac8I	GCNNGC	1 cut(s)	1014
CaiI	CAGNNNCTG	2 cut(s)	215, 851
CfoI	GCGC	1 cut(s)	976
Cfr13I	GGNCC	1 cut(s)	1000
Csp6I	GTAC	2 cut(s)	84, 1152
CviAII	CATG	3 cut(s)	811, 842, 1094
CviQI	GTAC	2 cut(s)	84, 1152
DdeI	CTNAG	5 cut(s)	80, 112, 225, 375, 852
DpnI	GATC	4 cut(s)	370, 678, 697, 1189
DpnII	GATC	4 cut(s)	368, 676, 695, 1187
Eam1104I	CTCTTC	2 cut(s)	258, 877
EarI	CTCTTC	2 cut(s)	258, 877
Eco130I	CCWWGG	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	58
Eco57I	CTGAAG	4 cut(s)	189, 237, 468, 858
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	1039
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	3 cut(s)	814, 845, 1097
FalI	AAGNNNNNCTT	4 cut(s)	1038, 1070, 1212, 1244
FatI	CATG	3 cut(s)	810, 841, 1093
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	3 cut(s)	17, 558, 599
Fsp4HI	GCNGC	1 cut(s)	846
FspBI	CTAG	3 cut(s)	477, 617, 1061
GlaI	GCGC	1 cut(s)	975
GluI	GCNGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	1002
HhaI	GCGC	1 cut(s)	976
Hin1II	CATG	3 cut(s)	814, 845, 1097
Hin6I	GCGC	1 cut(s)	974
HinP1I	GCGC	1 cut(s)	974
HincII	GTYRAC	2 cut(s)	34, 598
HindII	GTYRAC	2 cut(s)	34, 598
HinfI	GANTC	6 cut(s)	437, 456, 629, 646, 918, 1132
HphI	GGTGA	3 cut(s)	653, 788, 1114
Hpy166II	GTNNAC	5 cut(s)	34, 77, 86, 151, 598
Hpy188I	TCNGA	9 cut(s)	304, 356, 378, 487, 606, 700, 751, 877, 1192
Hpy188III	TCNNGA	7 cut(s)	185, 477, 533, 575, 650, 1061, 1292
Hpy8I	GTNNAC	5 cut(s)	34, 77, 86, 151, 598
HpyAV	CCTTC	2 cut(s)	275, 446
HpyCH4III	ACNGT	4 cut(s)	292, 656, 805, 1102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	999
HpyF3I	CTNAG	5 cut(s)	80, 112, 225, 375, 852
Hsp92II	CATG	3 cut(s)	814, 845, 1097
HspAI	GCGC	1 cut(s)	974
Kzo9I	GATC	4 cut(s)	368, 676, 695, 1187
LmnI	GCTCC	1 cut(s)	1095
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	6 cut(s)	257, 352, 876, 1024, 1060, 1150
MaeI	CTAG	3 cut(s)	477, 617, 1061
MaeIII	GTNAC	2 cut(s)	124, 211
MalI	GATC	4 cut(s)	370, 678, 697, 1189
MboI	GATC	4 cut(s)	368, 676, 695, 1187
MflI	RGATCY	3 cut(s)	368, 695, 1187
MhlI	GDGCHC	2 cut(s)	153, 810
MluCI	AATT	9 cut(s)	315, 504, 578, 621, 759, 931, 987, 1082, 1145
MlyI	GAGTC	2 cut(s)	450, 912
Mph1103I	ATGCAT	1 cut(s)	1039
MseI	TTAA	6 cut(s)	411, 686, 717, 780, 1044, 1085
MslI	CAYNNNNRTG	2 cut(s)	197, 1272
MspR9I	CCNGG	1 cut(s)	638
Mva1269I	GAATGC	3 cut(s)	113, 310, 1114
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	1 cut(s)	999
NdeII	GATC	4 cut(s)	368, 676, 695, 1187
NlaIII	CATG	3 cut(s)	814, 845, 1097
NlaIV	GGNNCC	1 cut(s)	1189
NsiI	ATGCAT	1 cut(s)	1039
NspV	TTCGAA	1 cut(s)	662
PasI	CCCWGGG	1 cut(s)	637
PctI	GAATGC	3 cut(s)	113, 310, 1114
PfeI	GAWTC	4 cut(s)	437, 629, 646, 1132
PkrI	GCNGC	1 cut(s)	847
PleI	GAGTC	2 cut(s)	450, 912
PpsI	GAGTC	2 cut(s)	450, 912
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	1189
PspPI	GGNCC	1 cut(s)	1000
PsrI	GAACNNNNNNTAC	2 cut(s)	928, 960
PstNI	CAGNNNCTG	2 cut(s)	215, 851
PsuI	RGATCY	3 cut(s)	368, 695, 1187
RsaI	GTAC	2 cut(s)	85, 1153
RsaNI	GTAC	2 cut(s)	84, 1152
RseI	CAYNNNNRTG	2 cut(s)	197, 1272
SaqAI	TTAA	6 cut(s)	411, 686, 717, 780, 1044, 1085
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	4 cut(s)	368, 676, 695, 1187
Sau96I	GGNCC	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	450, 912
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	2 cut(s)	153, 810
SfaNI	GCATC	6 cut(s)	257, 352, 876, 1024, 1060, 1150
SfuI	TTCGAA	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	197, 1272
SmlI	CTYRAG	3 cut(s)	183, 460, 920
SmoI	CTYRAG	3 cut(s)	183, 460, 920
Sse9I	AATT	9 cut(s)	315, 504, 578, 621, 759, 931, 987, 1082, 1145
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	3 cut(s)	477, 617, 1061
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	4 cut(s)	292, 656, 805, 1102
TaqI	TCGA	1 cut(s)	662
TasI	AATT	9 cut(s)	315, 504, 578, 621, 759, 931, 987, 1082, 1145
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	4 cut(s)	437, 629, 646, 1132
Tru1I	TTAA	6 cut(s)	411, 686, 717, 780, 1044, 1085
Tru9I	TTAA	6 cut(s)	411, 686, 717, 780, 1044, 1085
TscAI	CASTG	4 cut(s)	297, 522, 661, 1000
TseI	GCWGC	1 cut(s)	845
TspDTI	ATGAA	7 cut(s)	117, 276, 538, 681, 687, 830, 1121
TspGWI	ACGGA	2 cut(s)	143, 1205
TspRI	CASTG	4 cut(s)	297, 522, 661, 1000
VneI	GTGCAC	1 cut(s)	149
XapI	RAATTY	1 cut(s)	1145
XbaI	TCTAGA	2 cut(s)	476, 1060
XmaJI	CCTAGG	1 cut(s)	616
XspI	CTAG	3 cut(s)	477, 617, 1061
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.