Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

17673424 .. 17678267

Gene Structure 4844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19720.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTTAGCTTCTTCCAGGTCCCTCTTCAGAGTGGATCGGTTTCTGAAATTTACAACTGCATATGATGCACTGAAGCCAGTGAATTGCTTCCTAGGACACTGTGATTATCGCAGTTTGAGTTACAATATCGAAATGAGTGGTAGAAAAGACAAGCAAACTGTTGGGGACCGTAACAAAAAGCTCAGAACAACTAATGCTGTGTGGAGACCAGTCAGTACTCAAGCTAGTTCCAATGAAGAATGCTCTCTGAAGGAGGTCACAGAAAAGCTGGAATCTGAAACTCAAGTGCAAGAAGTGCACGAATGCACTTCTACGAGAATTTCAAGTTTGGAGAATGTCATAGAGGTGGCTGCAACTAACCTCGCTGGTGGTTCCAGTGCATCACAAGATAATGGAGAAGATAAAGTCTTTGGAGGAGAGCAAGTGGTTTCTACTGAAAAGCATTCAATTTCAGTTGAGGTTGGTGCTTCTTTGTTTCGCTTTATTAGAGGAAAAGGGGGATTGACACAGAAACAGATTGAGGATGAGATGGGAGTTAAGATTAGAATCCCTTTGTCAAAGGAGGAGGATTCACTAACTATTGAAGGCAACTCAGTTGAAAGTATATCTAGAGCTTTTGAGAAGATAAAATCTATAGTTGACCAGGCAGTTAAAAGCTCAAATCTCGATTACTCTCACTTCATTTCACTTCCATTGGCAATACATCCTGAATTAGTTGATAAGCTTGTCAACTTTCAGAACTCAATCCTGGGAATTAGTGATTCTGGTGTAGATGATAATCTGGATAGTAATTCAAATGAAGAGAATTCTGAGAGTGAAGGTGAATACCAAAATTTAGAGAAAAGACCCGATGTTGCAGTTGAACTTAAAGTTGAAGGTGACCATCAACATGTTAAAGTGAATCTAACCAACATACCTCTTGTCAGTTATGCGCTTAAATCATCAAAGGCGGCTACCCTATCTGACTTGGGGATTGAAAAGTCAATATTCATTAAACCAAAAACTTTTCACTTAACTGTGCTTATGCTGAAGTTGTGGAACAAGGACCGAGTTCATGCTGCTACTGAGGTTTTGCAGAGAATCTCTTCAAAAGTGATCGAAGCCTTAGATAATCGCCCTGTCTCCATAAGACTGAAGGGACTGAATTGTATGAGAGGTTCTTTGGCCAAAGCTGGTGTTGTCTATGCTCCAGTTGAAGAAATTGGCACTGAGGGACGACTTCTGCGTGCCTGTCAAGTCATCATCGATGCATATATTGAAGCCGGGCTTGTTTTAGAGAAAGATGCTAATCAGAAATTGAAGTTGCATGCAACCGTGATGAATGCAAGGCACAGGAAAAGGAAGAAAGGAACGAGAAAGGTTAATTCCTTTGATGCGCGTGGCATTTTCAAGCAATATGGATCGGAGGAATGGGGAGAGTATCTTATCCGCGAAGCTCATCTTTCACAGAGGTTTGTGTTTGATGACAAAGGATATTACCGTTGTTGTGCTTCTATACCTTTTCCTGAAATATGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

507

Amino Acids

56.48

Weight (kDa)

7.18

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	1378, 1431
AciI	CCGC	2 cut(s)	950, 1429
AclWI	GGATC	2 cut(s)	42, 1408
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	4 cut(s)	47, 318, 805, 832
AcuI	CTGAAG	5 cut(s)	10, 92, 269, 1049, 1154
AfaI	GTAC	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	889
AjnI	CCWGG	3 cut(s)	14, 642, 747
AluBI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1172, 1436
AluI	AGCT	9 cut(s)	8, 181, 224, 268, 614, 657, 724, 1172, 1436
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	199, 1126
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	42, 1408
AoxI	GGCC	1 cut(s)	1164
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	350, 1058
ApoI	RAATTY	4 cut(s)	47, 318, 805, 832
Asp700I	GAANNNNTTC	2 cut(s)	86, 1084
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	934, 1378
AspS9I	GGNCC	3 cut(s)	18, 166, 1045
AsuC2I	CCSGG	1 cut(s)	1264
AsuHPI	GGTGA	2 cut(s)	833, 890
AvaII	GGWCC	3 cut(s)	18, 166, 1045
AvrII	CCTAGG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	1166
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	337, 1045
BccI	CCATC	2 cut(s)	523, 891
BciT130I	CCWGG	3 cut(s)	16, 644, 749
BcnI	CCSGG	1 cut(s)	1264
BcoDI	GTCTC	2 cut(s)	199, 1126
BfaI	CTAG	3 cut(s)	92, 225, 609
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	3 cut(s)	351, 951, 1059
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	3 cut(s)	352, 952, 1060
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	16, 644, 749, 1264
Bme18I	GGWCC	3 cut(s)	18, 166, 1045
BmgT120I	GGNCC	3 cut(s)	18, 166, 1045
BmiI	GGNNCC	3 cut(s)	20, 167, 373
BmrFI	CCNGG	4 cut(s)	16, 644, 749, 1264
BmsI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
BpmI	CTGGAG	1 cut(s)	1173
BpuEI	CTTGAG	2 cut(s)	204, 267
BpuMI	CCSGG	1 cut(s)	1264
Bsa29I	ATCGAT	1 cut(s)	1245
BsaBI	GATNNNNATC	3 cut(s)	545, 777, 1287
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	91, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse1I	ACTGG	4 cut(s)	77, 209, 375, 1190
Bse8I	GATNNNNATC	3 cut(s)	545, 777, 1287
BseBI	CCWGG	3 cut(s)	16, 644, 749
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	91, 748
BseGI	GGATG	2 cut(s)	529, 703
BseJI	GATNNNNATC	3 cut(s)	545, 777, 1287
BseMII	CTCAG	5 cut(s)	196, 606, 801, 1056, 1200
BseNI	ACTGG	4 cut(s)	77, 209, 375, 1190
BseRI	GAGGAG	2 cut(s)	429, 578
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	337, 1045
Bsh1236I	CGCG	2 cut(s)	1378, 1431
BshFI	GGCC	1 cut(s)	1166
BshVI	ATCGAT	1 cut(s)	1245
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	1263
BslFI	GGGAC	4 cut(s)	4, 179, 1152, 1227
BsmAI	GTCTC	2 cut(s)	199, 1126
BsmFI	GGGAC	4 cut(s)	4, 179, 1152, 1227
BsmI	GAATGC	4 cut(s)	245, 308, 442, 1327
BsnI	GGCC	1 cut(s)	1166
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	34, 1095, 1400
BspACI	CCGC	2 cut(s)	950, 1429
BspANI	GGCC	1 cut(s)	1166
BspCNI	CTCAG	5 cut(s)	195, 605, 802, 1057, 1201
BspDI	ATCGAT	1 cut(s)	1245
BspFNI	CGCG	2 cut(s)	1378, 1431
BspLI	GGNNCC	3 cut(s)	20, 167, 373
BspPI	GGATC	2 cut(s)	42, 1408
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	4 cut(s)	77, 209, 375, 1190
BssECI	CCNNGG	2 cut(s)	91, 748
BssMI	GATC	3 cut(s)	34, 1095, 1400
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	16, 644, 749
Bst4CI	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
Bst6I	CTCTTC	3 cut(s)	29, 795, 1090
BstAPI	GCANNNNNTGC	2 cut(s)	65, 295
BstC8I	GCNNGC	2 cut(s)	1227, 1308
BstDEI	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
BstEII	GGTNACC	1 cut(s)	878
BstF5I	GGATG	2 cut(s)	529, 703
BstFNI	CGCG	2 cut(s)	1378, 1431
BstHHI	GCGC	2 cut(s)	934, 1378
BstKTI	GATC	3 cut(s)	37, 1098, 1403
BstMAI	GTCTC	2 cut(s)	199, 1126
BstMBI	GATC	3 cut(s)	34, 1095, 1400
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 295
BstNI	CCWGG	3 cut(s)	16, 644, 749
BstNSI	RCATGY	2 cut(s)	893, 1310
BstPI	GGTNACC	1 cut(s)	878
BstSCI	CCNGG	4 cut(s)	14, 642, 747, 1262
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	2 cut(s)	1378, 1431
BstV1I	GCAGC	2 cut(s)	337, 1045
Bsu15I	ATCGAT	1 cut(s)	1245
BsuRI	GGCC	1 cut(s)	1166
BsuTUI	ATCGAT	1 cut(s)	1245
BtsCI	GGATG	2 cut(s)	529, 703
BtsIMutI	CAGTG	5 cut(s)	68, 84, 97, 382, 1206
Cac8I	GCNNGC	2 cut(s)	1227, 1308
CfoI	GCGC	2 cut(s)	934, 1378
Cfr13I	GGNCC	3 cut(s)	18, 166, 1045
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	890, 1055, 1307
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
DpnI	GATC	3 cut(s)	36, 1097, 1402
DpnII	GATC	3 cut(s)	34, 1095, 1400
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	3 cut(s)	29, 795, 1090
EarI	CTCTTC	3 cut(s)	29, 795, 1090
Eco130I	CCWWGG	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	18, 166, 1045
Eco57I	CTGAAG	5 cut(s)	10, 92, 269, 1049, 1154
Eco91I	GGTNACC	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	3 cut(s)	14, 642, 747
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	1252
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	893, 1058, 1310
FalI	AAGNNNNNCTT	4 cut(s)	1251, 1283, 1425, 1457
FaqI	GGGAC	4 cut(s)	4, 179, 1152, 1227
FatI	CATG	3 cut(s)	889, 1054, 1306
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	351, 951, 1059
FokI	GGATG	2 cut(s)	536, 690
Fsp4HI	GCNGC	3 cut(s)	351, 951, 1059
FspBI	CTAG	3 cut(s)	92, 225, 609
GlaI	GCGC	2 cut(s)	933, 1377
GluI	GCNGC	3 cut(s)	351, 951, 1059
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	1 cut(s)	1166
HapII	CCGG	1 cut(s)	1263
HhaI	GCGC	2 cut(s)	934, 1378
Hin1II	CATG	3 cut(s)	893, 1058, 1310
Hin6I	GCGC	2 cut(s)	932, 1376
HinP1I	GCGC	2 cut(s)	932, 1376
HincII	GTYRAC	2 cut(s)	640, 730
HindII	GTYRAC	2 cut(s)	640, 730
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	6 cut(s)	272, 546, 569, 761, 901, 1080
HpaII	CCGG	1 cut(s)	1263
HphI	GGTGA	2 cut(s)	833, 890
Hpy166II	GTNNAC	3 cut(s)	298, 640, 730
Hpy188III	TCNNGA	5 cut(s)	609, 665, 707, 782, 1505
Hpy8I	GTNNAC	3 cut(s)	298, 640, 730
HpyAV	CCTTC	5 cut(s)	244, 578, 812, 869, 1129
HpyCH4III	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 295
HpyF3I	CTNAG	6 cut(s)	182, 592, 810, 1065, 1105, 1209
Hsp92II	CATG	3 cut(s)	893, 1058, 1310
HspAI	GCGC	2 cut(s)	932, 1376
Kzo9I	GATC	3 cut(s)	34, 1095, 1400
LmnI	GCTCC	1 cut(s)	1192
Lsp1109I	GCAGC	2 cut(s)	337, 1045
LweI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
MaeI	CTAG	3 cut(s)	92, 225, 609
MaeIII	GTNAC	4 cut(s)	119, 170, 256, 878
MalI	GATC	3 cut(s)	36, 1097, 1402
MboI	GATC	3 cut(s)	34, 1095, 1400
MboII	GAAGA	9 cut(s)	3, 16, 248, 410, 634, 812, 1077, 1208, 1354
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	1166
MluNI	TGGCCA	1 cut(s)	1166
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	1 cut(s)	1252
MroXI	GAANNNNTTC	2 cut(s)	86, 1084
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
MslI	CAYNNNNRTG	2 cut(s)	344, 888
Msp20I	TGGCCA	1 cut(s)	1166
MspI	CCGG	1 cut(s)	1263
MspR9I	CCNGG	4 cut(s)	16, 644, 749, 1264
Mva1269I	GAATGC	4 cut(s)	245, 308, 442, 1327
MvaI	CCWGG	3 cut(s)	16, 644, 749
MvnI	CGCG	2 cut(s)	1378, 1431
MwoI	GCNNNNNNNGC	2 cut(s)	65, 295
NciI	CCSGG	1 cut(s)	1264
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	34, 1095, 1400
NlaIII	CATG	3 cut(s)	893, 1058, 1310
NlaIV	GGNNCC	3 cut(s)	20, 167, 373
NmuCI	GTSAC	2 cut(s)	256, 878
NsiI	ATGCAT	1 cut(s)	1252
NspI	RCATGY	2 cut(s)	893, 1310
PaeI	GCATGC	1 cut(s)	1310
PciI	ACATGT	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	1222
PctI	GAATGC	4 cut(s)	245, 308, 442, 1327
PdmI	GAANNNNTTC	2 cut(s)	86, 1084
PfeI	GAWTC	6 cut(s)	272, 546, 569, 761, 901, 1080
PkrI	GCNGC	3 cut(s)	352, 952, 1060
PpuMI	RGGWCCY	1 cut(s)	18
PscI	ACATGT	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	14, 642, 747
PspEI	GGTNACC	1 cut(s)	878
PspGI	CCWGG	3 cut(s)	14, 642, 747
PspN4I	GGNNCC	3 cut(s)	20, 167, 373
PspPI	GGNCC	3 cut(s)	18, 166, 1045
PspPPI	RGGWCCY	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	1141, 1173
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	344, 888
SaqAI	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
SatI	GCNGC	3 cut(s)	351, 951, 1059
Sau3AI	GATC	3 cut(s)	34, 1095, 1400
Sau96I	GGNCC	3 cut(s)	18, 166, 1045
ScaI	AGTACT	1 cut(s)	217
ScrFI	CCNGG	4 cut(s)	16, 644, 749, 1264
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	5 cut(s)	55, 389, 1237, 1273, 1363
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	3 cut(s)	18, 166, 1045
SmiMI	CAYNNNNRTG	2 cut(s)	344, 888
SmlI	CTYRAG	2 cut(s)	219, 282
SmoI	CTYRAG	2 cut(s)	219, 282
SphI	GCATGC	1 cut(s)	1310
SsiI	CCGC	2 cut(s)	950, 1429
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	3 cut(s)	92, 225, 609
StyD4I	CCNGG	4 cut(s)	14, 642, 747, 1262
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	6 cut(s)	101, 160, 170, 1018, 1315, 1481
TaqI	TCGA	4 cut(s)	129, 666, 1098, 1245
TaqII	GACCGA	1 cut(s)	1062
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	953
TfiI	GAWTC	6 cut(s)	272, 546, 569, 761, 901, 1080
Tru1I	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
Tru9I	TTAA	8 cut(s)	537, 651, 867, 894, 936, 993, 1013, 1362
TscAI	CASTG	5 cut(s)	75, 84, 104, 382, 1213
TseFI	GTSAC	2 cut(s)	256, 878
TseI	GCWGC	2 cut(s)	350, 1058
Tsp45I	GTSAC	2 cut(s)	256, 878
TspDTI	ATGAA	6 cut(s)	249, 670, 813, 979, 1043, 1334
TspRI	CASTG	5 cut(s)	75, 84, 104, 382, 1213
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	3 cut(s)	18, 166, 1045
XapI	RAATTY	4 cut(s)	47, 318, 805, 832
XbaI	TCTAGA	1 cut(s)	608
XceI	RCATGY	2 cut(s)	893, 1310
XmaJI	CCTAGG	1 cut(s)	91
XmnI	GAANNNNTTC	2 cut(s)	86, 1084
XspI	CTAG	3 cut(s)	92, 225, 609
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.