Rorug02G0358100

AKAP7 2'5' RNA ligase-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001993
Physical Location & Seq
Forward (+)
45209847 .. 45212590
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0358100.1

Sequence Viewer

Length: 1584 bp
ATGGGTTTTGATTTTTCTTTTCAATTGTTTACAGCATTGTGGTGTCATTGGTGTGAAACTGTGAACAAAGTCAAGGACTCAAGGAGGGCGGTTTGCGTAGACAACGTATTAGATTTCTCACATCCAGGTGAAAATGAGGTAACTGAAGGAGTTCAAGATATAGGTGAGAACGAAAATGAGGTAGCGGAAAGAGTTGAAGATATAGGTGAAAATGAAAATGAGGTAGCCGAAGGAGTTGAAGATATAGGTGAACATGAAAATGATCAAACAAAAAATATGGAAGAAACAAATGTGCTTGAAAGTGAGAATATTGAAATAAATTGTGTGAGTGAACCTTTAGAAGGTACAATGCCTTTGAATATATATGATCCTAGAGTTTGGGATAGTTTAGATGGAAAAATGAGAGATCTGCTTGTTGAAAAAGGTCCTATTAGAGAAACCAATATTGTTTTTCCTAAGGATAATCTAAATAGGGGGTTCTCTTTGGATTATTTTTCTCAAAAGATGAGTAATGGTGAACTTTCCGATAGAAAATGGTTGGTTTATTCAAAAGATTTGGATAAAGTATTTTGTTTTTGTTGTAAAGTTGTAAGAAAAGCTCATTCTAGGAGTCAATTAGCAAATGAAGGAATTAATGATTGGAAACATTTGGGGGATAAGCTTAAACAACATGAAAAGAGTCGTGAACACCTCTCTAACCTTAGAGCTTGGAATGAGCTACGAGTGAGATTGAGCACAAATCAAACAATTGATAAAGAATTACAAGAGCAAATCAAGAAAGATACAGAGCATTGGAAAGAAGTCATGGTTAAGGCTGGAGATATGATTCTTGATGTTGCTATTAAAAGTTTAAAAGGGTTGATTTCATTTTTTGAAAAATATAGAGAAGATGGATTTAATTCTGCTATAATTGATGCTAAAGAAATTGCAAATGAAATGGGAATTGAGTCTGTATTTCCTGTGAAGCGTAGGGTTATAAGAAAGAGACATTTTGATGAGATTCCTGATACAGATAGAGAACAACAATCAGCTCAAGAAGATTTTAGAACTGATTACTTTCTTGTCTTAGTTGATATGGCTCTTTCTCAATTGAAGAGTAGATTTGAACAAATGGAAAGTTTTGAATATGTATTTGGCTTCTTATTTGATGCATCACGGTTGGTTTCATTGGATGATGAAGAAATTAAAAATTGTTGTTTGAAACTTGAACTTGCTTTGAAACATGGTGAGTTGTCTGATATTGATGCAAAATATTTGCTTTCTGAGTTACAAATATTGCAGGAAATGCTACCAAATGAAGCATATGAAACAGGAAAACCATGGAATTCCATTAAAATTATGGAGTTTGCAAAAAAAATGGATATGTTTCCAAATATTTTGGTTGCTTATAGGATTTTATTGACTGTACCTATTACAGTAGCATCTGCGGAAAGAAGTTTTTCAAAATTAAAGTTATTAAAATCTTATTTGCGGACAACGATGACTCAAGATAGGTTGAATGGTTTGGCAATCTTGAGTATTGAAAAGAATATGTTGAAAAATGTTGAGGTTGAGCACATAATTGATGACTTAATTTGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

527

Amino Acids

61.1

Weight (kDa)

4.91

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 444 - 511 1.3e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AccI GTMKAC 1 cut(s) 99
AciI CCGC 4 cut(s) 89, 185, 1427, 1471
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 1324
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 2 cut(s) 346, 1407
AfiI CCNNNNNNNGG 1 cut(s) 341
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 4 cut(s) 622, 654, 1116, 1148
AluBI AGCT 5 cut(s) 599, 661, 707, 718, 1031
AluI AGCT 5 cut(s) 599, 661, 707, 718, 1031
Alw21I GWGCWC 2 cut(s) 737, 1557
Alw26I GTCTC 1 cut(s) 979
AlwI GGATC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 1324
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 2 cut(s) 150, 1438
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 6 cut(s) 140, 176, 218, 260, 527, 1238
AvaII GGWCC 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 456
Bbv12I GWGCWC 2 cut(s) 737, 1557
BccI CCATC 2 cut(s) 386, 884
BciT130I CCWGG 1 cut(s) 126
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 979
BfaI CTAG 2 cut(s) 372, 606
BglII AGATCT 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 5 cut(s) 904, 1138, 1160, 1234, 1430
BpmI CTGGAG 1 cut(s) 837
BpuEI CTTGAG 4 cut(s) 64, 1017, 1470, 1534
BsaJI CCNNGG 1 cut(s) 1319
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 1319
BseGI GGATG 2 cut(s) 121, 1177
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 1254
BsiHKAI GWGCWC 2 cut(s) 737, 1557
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 979
Bsp1286I GDGCHC 2 cut(s) 737, 1557
Bsp143I GATC 3 cut(s) 262, 367, 406
Bsp19I CCATGG 1 cut(s) 1319
BspACI CCGC 4 cut(s) 89, 185, 1427, 1471
BspCNI CTCAG 1 cut(s) 1255
BspPI GGATC 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 1319
BssMI GATC 3 cut(s) 262, 367, 406
BssT1I CCWWGG 1 cut(s) 1319
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 4 cut(s) 61, 1158, 1405, 1417
Bst6I CTCTTC 1 cut(s) 1088
BstAPI GCANNNNNTGC 1 cut(s) 1285
BstDEI CTNAG 4 cut(s) 456, 701, 1066, 1263
BstDSI CCRYGG 1 cut(s) 1319
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 121, 1177
BstKTI GATC 3 cut(s) 265, 370, 409
BstMAI GTCTC 1 cut(s) 979
BstMBI GATC 3 cut(s) 262, 367, 406
BstMWI GCNNNNNNNGC 1 cut(s) 1285
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 1319
BtsCI GGATG 2 cut(s) 121, 1177
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 345, 1406
CviAII CATG 5 cut(s) 254, 671, 805, 1223, 1320
CviJI RGCY 9 cut(s) 227, 599, 661, 707, 718, 815, 1031, 1079, 1137
CviKI_1 RGCY 9 cut(s) 227, 599, 661, 707, 718, 815, 1031, 1079, 1137
CviQI GTAC 2 cut(s) 345, 1406
DdeI CTNAG 4 cut(s) 456, 701, 1066, 1263
DpnI GATC 3 cut(s) 264, 369, 408
DpnII GATC 3 cut(s) 262, 367, 406
DraI TTTAAA 1 cut(s) 852
Eam1104I CTCTTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1088
Eco130I CCWWGG 1 cut(s) 1319
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 456
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 1324
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 1319
EcoT22I ATGCAT 1 cut(s) 1153
ErhI CCWWGG 1 cut(s) 1319
FaeI CATG 5 cut(s) 257, 674, 808, 1226, 1323
FatI CATG 5 cut(s) 253, 670, 804, 1222, 1319
FauNDI CATATG 1 cut(s) 1303
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 99
FokI GGATG 2 cut(s) 108, 1184
FspBI CTAG 2 cut(s) 372, 606
GsuI CTGGAG 1 cut(s) 837
Hin1II CATG 5 cut(s) 257, 674, 808, 1226, 1323
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 7 cut(s) 77, 610, 679, 826, 947, 1000, 1483
HphI GGTGA 6 cut(s) 140, 176, 218, 260, 527, 1238
Hpy166II GTNNAC 7 cut(s) 30, 64, 100, 251, 332, 518, 686
Hpy188I TCNGA 3 cut(s) 526, 1237, 1264
Hpy188III TCNNGA 8 cut(s) 155, 683, 775, 830, 1004, 1034, 1487, 1513
Hpy8I GTNNAC 7 cut(s) 30, 64, 100, 251, 332, 518, 686
HpyAV CCTTC 4 cut(s) 140, 224, 335, 620
HpyCH4III ACNGT 4 cut(s) 61, 1158, 1405, 1417
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 6 cut(s) 929, 1151, 1247, 1279, 1349, 1578
HpyF10VI GCNNNNNNNGC 1 cut(s) 1285
HpyF3I CTNAG 4 cut(s) 456, 701, 1066, 1263
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 5 cut(s) 257, 674, 808, 1226, 1323
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 262, 367, 406
LpnPI CCDG 7 cut(s) 111, 138, 801, 972, 1017, 1265, 1296
LweI GCATC 5 cut(s) 904, 1138, 1160, 1234, 1430
MaeI CTAG 2 cut(s) 372, 606
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 139, 1266
MalI GATC 3 cut(s) 264, 369, 408
MboI GATC 3 cut(s) 262, 367, 406
MboII GAAGA 7 cut(s) 209, 251, 293, 899, 1049, 1105, 1190
MfeI CAATTG 3 cut(s) 23, 747, 1088
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 737, 1557
MlyI GAGTC 5 cut(s) 71, 619, 688, 956, 1477
MnlI CCTC 6 cut(s) 78, 130, 172, 214, 701, 1540
Mph1103I ATGCAT 1 cut(s) 1153
MroXI GAANNNNTTC 2 cut(s) 150, 1438
MslI CAYNNNNRTG 5 cut(s) 40, 51, 126, 258, 993
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 3 cut(s) 23, 747, 1088
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 1285
NcoI CCATGG 1 cut(s) 1319
NdeI CATATG 1 cut(s) 1303
NdeII GATC 3 cut(s) 262, 367, 406
NlaIII CATG 5 cut(s) 257, 674, 808, 1226, 1323
NsiI ATGCAT 1 cut(s) 1153
PdmI GAANNNNTTC 2 cut(s) 150, 1438
PfeI GAWTC 2 cut(s) 826, 1000
PleI GAGTC 5 cut(s) 71, 618, 687, 955, 1477
PpsI GAGTC 5 cut(s) 71, 618, 687, 955, 1477
PpuMI RGGWCCY 1 cut(s) 425
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 1 cut(s) 977
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 2 cut(s) 346, 1407
RsaNI GTAC 2 cut(s) 345, 1406
RseI CAYNNNNRTG 5 cut(s) 40, 51, 126, 258, 993
Sau3AI GATC 3 cut(s) 262, 367, 406
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 5 cut(s) 71, 619, 688, 956, 1477
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 737, 1557
SfaNI GCATC 5 cut(s) 904, 1138, 1160, 1234, 1430
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 5 cut(s) 40, 51, 126, 258, 993
SmlI CTYRAG 4 cut(s) 79, 1032, 1485, 1513
SmoI CTYRAG 4 cut(s) 79, 1032, 1485, 1513
SsiI CCGC 4 cut(s) 89, 185, 1427, 1471
SspI AATATT 5 cut(s) 310, 445, 1253, 1275, 1375
SspMI CTAG 2 cut(s) 372, 606
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 1319
TaaI ACNGT 4 cut(s) 61, 1158, 1405, 1417
TaiI ACGT 1 cut(s) 108
TfiI GAWTC 2 cut(s) 826, 1000
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 633
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 1336
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 2 cut(s) 150, 1438
XspI CTAG 2 cut(s) 372, 606
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.