Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001983.1

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Reverse (-)

9810 .. 14421

Gene Structure 4612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001983.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atggaggacgcggtccttttcaatttcagagtgggccgagttctgaagtttacttgcacctatgctgctttgaagcctctgaatcatcacttgcctctgttgggtcactgtgattaccgtgttttgagctacagcgttaacatggatggtagaagacataagcgaagcggtgttgaccataacaacaagctcaatctcgtatggagaccagtcagtaaactcagtacacaagtcagttccaatgaagaatgctcagtagtggaggttacggataagctggaagaagaagtgcactcttgttcgtctaccaagatttcaagtgctcaagatgacatagagatggcttcagcagttactgaagcaactaagctcactacttgtttaagtgcatcgcaagataatgaagaagataaaggtttagaaggagaaacagtgcttttgaccgaaaagcattcaatttcagttgaggttggggcttctttgcatcgctttatcagaggaaaaggaggatctactcagaaaatgattgaagatgagacaggagtgaagattaaaatccctttgtcaaacaaagaggattccattattattgaaggcctctcaagtgaaagtgtatctagagcttcagagaagatgcaggctataattgatgaggcagtgaaaagcccaagtcttgattactctcacttcatttcacttcccttagcaatacatcctgaattagttgataagcttgtcaactttcagaactccattctaggaattactgattcttcccagggtgagaatctggacggtggttcgaatgaagatgattccaataatgaagatgaagatcaaaagttaaagaaaggatctgatgttgcagttgaacttaaagctgaaccatcaaagtctcctaccctatctgacttgggaattgagaaatcaatctttattaaaccgaaaacatttcacctaactgtgctcatgttgaagttgtggaacaaggacagagttcatgcagctactgaggttttgcagagcatctcttcggaagtgatggaagccttagataatcgcgctctatccataagactcaagggactgaattgtatgagaggttcttttgccaaagctggtgttctatatgcgcccgttgaagaaattggcaatgagggccgacttatgcgtgcctgtcaagtcattattgatgcatttgttaaagcagggcttgttctagagaaagatgcaaatcagaaattaaagctccatgcaacggtgatgaaggcaaggcatggacaaaggaatcaaaagagaaaatttagtacctttgatgcccgtggcatatataagcattatggatccgaggaatggggagagtatcttatccgtgaagctcatctttcacaaaggtttgtgtacgatgacaagggatattatcattgttgtgcttctataccttttccagaaatatgcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

487

Amino Acids

54.19

Weight (kDa)

6.05

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	2 cut(s)	11, 1062
AciI	CCGC	2 cut(s)	11, 168
AclWI	GGATC	4 cut(s)	517, 862, 1338, 1351
AcsI	RAATTY	1 cut(s)	1301
AcuI	CTGAAG	4 cut(s)	65, 330, 378, 609
AfaI	GTAC	3 cut(s)	226, 1309, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	101, 1258, 1353
AgsI	TTSAA	9 cut(s)	22, 73, 318, 456, 530, 593, 872, 976, 1142
AjnI	CCWGG	1 cut(s)	777
Alw21I	GWGCWC	3 cut(s)	294, 325, 969
Alw26I	GTCTC	3 cut(s)	199, 530, 900
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	517, 862, 1338, 1351
AlwNI	CAGNNNCTG	2 cut(s)	356, 1010
AoxI	GGCC	3 cut(s)	34, 595, 1159
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	65, 1004
ApoI	RAATTY	1 cut(s)	1301
AspLEI	GCGC	2 cut(s)	1064, 1135
AspS9I	GGNCC	3 cut(s)	13, 34, 1159
AsuHPI	GGTGA	3 cut(s)	794, 947, 1273
AsuII	TTCGAA	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	1343
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	3 cut(s)	294, 325, 969
BbvI	GCAGC	2 cut(s)	52, 1016
BccI	CCATC	4 cut(s)	140, 334, 895, 1036
BciT130I	CCWGG	1 cut(s)	779
BcoDI	GTCTC	3 cut(s)	199, 530, 900
BfaI	CTAG	3 cut(s)	618, 758, 1220
BfmI	CTRYAG	1 cut(s)	130
BisI	GCNGC	2 cut(s)	66, 1005
BlsI	GCNGC	2 cut(s)	67, 1006
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	13, 34, 1159
BmiI	GGNNCC	1 cut(s)	1345
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	7 cut(s)	398, 493, 624, 1035, 1183, 1219, 1306
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	703
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	3 cut(s)	309, 586, 1064
BsaBI	GATNNNNATC	3 cut(s)	554, 834, 1233
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	777, 778, 1321, 1347
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 1258, 1353
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	1159
Bse8I	GATNNNNATC	3 cut(s)	554, 834, 1233
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	4 cut(s)	777, 778, 1321, 1347
BseGI	GGATG	2 cut(s)	151, 712
BseJI	GATNNNNATC	3 cut(s)	554, 834, 1233
BseLI	CCNNNNNNNGG	3 cut(s)	101, 1258, 1353
BseMI	GCAATG	1 cut(s)	1159
BseMII	CTCAG	4 cut(s)	235, 267, 530, 1002
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	52, 1016
Bsh1236I	CGCG	2 cut(s)	11, 1062
BshFI	GGCC	3 cut(s)	36, 597, 1161
BsiHKAI	GWGCWC	3 cut(s)	294, 325, 969
BslFI	GGGAC	1 cut(s)	1098
BslI	CCNNNNNNNGG	3 cut(s)	101, 1258, 1353
BsmAI	GTCTC	3 cut(s)	199, 530, 900
BsmFI	GGGAC	1 cut(s)	1098
BsmI	GAATGC	2 cut(s)	254, 451
BsnI	GGCC	3 cut(s)	36, 597, 1161
Bso31I	GGTCTC	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	3 cut(s)	294, 325, 969
Bsp143I	GATC	4 cut(s)	509, 835, 854, 1343
BspACI	CCGC	2 cut(s)	11, 168
BspANI	GGCC	3 cut(s)	36, 597, 1161
BspCNI	CTCAG	4 cut(s)	234, 266, 529, 1003
BspFNI	CGCG	2 cut(s)	11, 1062
BspLI	GGNNCC	1 cut(s)	1345
BspPI	GGATC	4 cut(s)	517, 862, 1338, 1351
BspT104I	TTCGAA	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	1159
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	777, 778, 1321, 1347
BssMI	GATC	4 cut(s)	509, 835, 854, 1343
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	6 cut(s)	110, 119, 433, 797, 964, 1261
Bst6I	CTCTTC	1 cut(s)	1036
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	639, 1173
BstDEI	CTNAG	7 cut(s)	221, 253, 366, 516, 703, 1011, 1051
BstDSI	CCRYGG	1 cut(s)	1321
BstF5I	GGATG	2 cut(s)	151, 712
BstFNI	CGCG	2 cut(s)	11, 1062
BstHHI	GCGC	2 cut(s)	1064, 1135
BstKTI	GATC	4 cut(s)	512, 838, 857, 1346
BstMAI	GTCTC	3 cut(s)	199, 530, 900
BstMBI	GATC	4 cut(s)	509, 835, 854, 1343
BstMWI	GCNNNNNNNGC	1 cut(s)	1158
BstNI	CCWGG	1 cut(s)	779
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	2 cut(s)	11, 1062
BstV1I	GCAGC	2 cut(s)	52, 1016
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	509, 854, 1343
BstYI	RGATCY	3 cut(s)	509, 854, 1343
BsuRI	GGCC	3 cut(s)	36, 597, 1161
BtgI	CCRYGG	1 cut(s)	1321
BtgZI	GCGATG	2 cut(s)	375, 470
BtsCI	GGATG	2 cut(s)	151, 712
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	106, 438, 663
Cac8I	GCNNGC	2 cut(s)	639, 1173
CaiI	CAGNNNCTG	2 cut(s)	356, 1010
CfoI	GCGC	2 cut(s)	1064, 1135
Cfr13I	GGNCC	3 cut(s)	13, 34, 1159
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	225, 1308, 1402
CviAII	CATG	5 cut(s)	142, 970, 1001, 1253, 1277
CviQI	GTAC	3 cut(s)	225, 1308, 1402
DdeI	CTNAG	7 cut(s)	221, 253, 366, 516, 703, 1011, 1051
DpnI	GATC	4 cut(s)	511, 837, 856, 1345
DpnII	GATC	4 cut(s)	509, 835, 854, 1343
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Eco147I	AGGCCT	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	4 cut(s)	65, 330, 378, 609
EcoRII	CCWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	1198
FaeI	CATG	5 cut(s)	145, 973, 1004, 1256, 1280
FalI	AAGNNNNNCTT	4 cut(s)	1197, 1229, 1368, 1400
FaqI	GGGAC	1 cut(s)	1098
FatI	CATG	5 cut(s)	141, 969, 1000, 1252, 1276
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	2 cut(s)	66, 1005
FokI	GGATG	2 cut(s)	158, 699
Fsp4HI	GCNGC	2 cut(s)	66, 1005
FspBI	CTAG	3 cut(s)	618, 758, 1220
GlaI	GCGC	2 cut(s)	1063, 1134
GluI	GCNGC	2 cut(s)	66, 1005
HaeIII	GGCC	3 cut(s)	36, 597, 1161
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	1064, 1135
Hin1II	CATG	5 cut(s)	145, 973, 1004, 1256, 1280
Hin6I	GCGC	2 cut(s)	1062, 1133
HinP1I	GCGC	2 cut(s)	1062, 1133
HincII	GTYRAC	3 cut(s)	139, 175, 739
HindII	GTYRAC	3 cut(s)	139, 175, 739
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	7 cut(s)	82, 578, 770, 787, 815, 1077, 1288
HpaI	GTTAAC	1 cut(s)	139
HphI	GGTGA	3 cut(s)	794, 947, 1273
Hpy166II	GTNNAC	9 cut(s)	51, 139, 175, 218, 227, 292, 306, 739, 1402
Hpy188III	TCNNGA	7 cut(s)	326, 618, 674, 716, 791, 1220, 1448
Hpy8I	GTNNAC	9 cut(s)	51, 139, 175, 218, 227, 292, 306, 739, 1402
HpyAV	CCTTC	3 cut(s)	416, 587, 1261
HpyCH4III	ACNGT	6 cut(s)	110, 119, 433, 797, 964, 1261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1158
HpyF3I	CTNAG	7 cut(s)	221, 253, 366, 516, 703, 1011, 1051
Hsp92II	CATG	5 cut(s)	145, 973, 1004, 1256, 1280
HspAI	GCGC	2 cut(s)	1062, 1133
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	509, 835, 854, 1343
LmnI	GCTCC	1 cut(s)	1254
Lsp1109I	GCAGC	2 cut(s)	52, 1016
LweI	GCATC	7 cut(s)	398, 493, 624, 1035, 1183, 1219, 1306
MaeI	CTAG	3 cut(s)	618, 758, 1220
MaeIII	GTNAC	3 cut(s)	104, 265, 352
MalI	GATC	4 cut(s)	511, 837, 856, 1345
MboI	GATC	4 cut(s)	509, 835, 854, 1343
MflI	RGATCY	3 cut(s)	509, 854, 1343
MhlI	GDGCHC	3 cut(s)	294, 325, 969
MlyI	GAGTC	1 cut(s)	1071
Mph1103I	ATGCAT	1 cut(s)	1198
MseI	TTAA	8 cut(s)	138, 383, 552, 845, 876, 939, 1203, 1244
MslI	CAYNNNNRTG	2 cut(s)	338, 1428
MspR9I	CCNGG	1 cut(s)	779
Mva1269I	GAATGC	2 cut(s)	254, 451
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	2 cut(s)	11, 1062
MwoI	GCNNNNNNNGC	1 cut(s)	1158
NdeII	GATC	4 cut(s)	509, 835, 854, 1343
NlaIII	CATG	5 cut(s)	145, 973, 1004, 1256, 1280
NlaIV	GGNNCC	1 cut(s)	1345
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	1198
NspV	TTCGAA	1 cut(s)	803
PasI	CCCWGGG	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	2 cut(s)	254, 451
PfeI	GAWTC	6 cut(s)	82, 578, 770, 787, 815, 1288
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	67, 1006
PleI	GAGTC	1 cut(s)	1071
PpsI	GAGTC	1 cut(s)	1071
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	1 cut(s)	1345
PspPI	GGNCC	3 cut(s)	13, 34, 1159
PsrI	GAACNNNNNNTAC	2 cut(s)	1087, 1119
PstNI	CAGNNNCTG	2 cut(s)	356, 1010
PsuI	RGATCY	3 cut(s)	509, 854, 1343
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	3 cut(s)	226, 1309, 1403
RsaNI	GTAC	3 cut(s)	225, 1308, 1402
RseI	CAYNNNNRTG	2 cut(s)	338, 1428
SaqAI	TTAA	8 cut(s)	138, 383, 552, 845, 876, 939, 1203, 1244
SatI	GCNGC	2 cut(s)	66, 1005
Sau3AI	GATC	4 cut(s)	509, 835, 854, 1343
Sau96I	GGNCC	3 cut(s)	13, 34, 1159
SchI	GAGTC	1 cut(s)	1071
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	3 cut(s)	294, 325, 969
SfaNI	GCATC	7 cut(s)	398, 493, 624, 1035, 1183, 1219, 1306
SfcI	CTRYAG	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	803
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	338, 1428
SmlI	CTYRAG	3 cut(s)	324, 601, 1079
SmoI	CTYRAG	3 cut(s)	324, 601, 1079
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	2 cut(s)	11, 168
SspMI	CTAG	3 cut(s)	618, 758, 1220
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	777
TaaI	ACNGT	6 cut(s)	110, 119, 433, 797, 964, 1261
TaqI	TCGA	1 cut(s)	803
TaqII	GACCGA	1 cut(s)	458
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	6 cut(s)	82, 578, 770, 787, 815, 1288
Tru1I	TTAA	8 cut(s)	138, 383, 552, 845, 876, 939, 1203, 1244
Tru9I	TTAA	8 cut(s)	138, 383, 552, 845, 876, 939, 1203, 1244
TscAI	CASTG	3 cut(s)	113, 438, 663
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	65, 1004
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	8 cut(s)	258, 417, 679, 822, 840, 846, 989, 1280
TspGWI	ACGGA	2 cut(s)	284, 1361
TspRI	CASTG	3 cut(s)	113, 438, 663
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	1301
XbaI	TCTAGA	2 cut(s)	617, 1219
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	3 cut(s)	618, 758, 1220
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.