Rw2G033250

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001993
Physical Location & Seq
Forward (+)
54472432 .. 54474732
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033250.1

Sequence Viewer

Length: 1260 bp
ATGGCCTCACAAGACTACTCTCCCCCAACTCCATCTTTTGCAACAAATAAAAACAAGTTCTTCTCCGGCTTCACCAGAAGCACATCAACCAAAGAACCATCCTTCTCACAATTTCCTTATACACCGCCTCGCCATAACACCAATGACGTCTCTCCTTCCTTCTCCCAAACCGAAAGCCTCCACGCCTCCCCAACCTCCTCCCCTCAGTTCATCCCTCTCAAACACCCCGACCTCCTCACCGCCTTCCGTTGCATCTCCTCCGTCCTGAAAAAGGACGGCCGGATCTTGTCCATCACCGCCTCCAGTGGCCTAGTTTACTCCGGCTCAGATACCAATGTCATTAGGGTTTGGAAGCTACCCGAGTTCACAGAATGTGGGCAGCTCAAGACCAAAGCTTGCATGGTGGTGGCACTAGAGGTGTCTCATGATAGGGTTTATGCTGCTTATGGTGATGGGAAGGTGAGAATATGGCAGAGAACATGGGATGGAGGGTTGAAGCATGAGAGGTTGGCTACGATTCCGAAGATCGGAAGTTATGTCCGGAGTTTCTACATTGCCGGGAAAGATAAGACGGTTAAGCATATGGGTGCCATAACATCACTAGCCATCAATGTAGCAGAGGACATCCTCTACTCAGCTTCCATTGACAAAACAGTGAAAGTATGGCGAATTTCAGACCTCAAATGCATCGAGACAATCCAAGCCCACGCCGAGCCAATCAATGCCATCATTGCCGCGGACGATGGAATCCTCTACACGGCCTCCGACGATGCAACTGTTCGAGTCTGGCGCCGCAACTTTTGTCGTGGCGACCAGCTTCCACATTCACTCACCGTGACTCTACCGGCCAAGTACTCCCCCGTCAAGACCCTAACCCTAACAGCGGATGGTGCAATCTTGTACGGGGGTTGCACTGACGGGTACATACACTTTTGGCTAGGGGGCCACACCCATGCAGTTATGTGCTTGGCCAGCGTGGCGAACTACGTGGTCAGTGGGTCAGCTGACTCAACGAGTAGGATTTGGTCTAAGGACCCTGATGGTCTGCATACTTGTCTAGCAGTCCTTGTGGGTCACAGAGGGCCAATCAGGTGTGTGACAGCATTTCTGGGAAGGCTGGGAGAAGAGACTGAGGAGGGGTGCACAATCTGTACAGGGAGTCTTGATGGTGTTCTCAAAGTGTGGCGTGTGACATCCAAAAGTAATAGTGGTAATAGTGGGTGTTTAGCACAGGATGGGAGTGAGTATTTCGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

419

Amino Acids

45.68

Weight (kDa)

8.36

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EML PF23409 107 - 302 9.6e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 181 - 263 2.3e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 191 - 264 1.6e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 192 - 265 8e-08 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 193 - 312 3.7e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 193 - 264 3.3e-12 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 193 - 399 9.9e-16 THOC3 beta-propeller domain
WDR55 PF24796 193 - 404 7.8e-09 WDR55
WD40_Prp19 PF24814 196 - 312 1.3e-11 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 205 - 312 4e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 295 - 400 1.3e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 313 - 399 1.1e-08 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 2 cut(s) 587, 789
AccII CGCG 1 cut(s) 737
AccIII TCCGGA 1 cut(s) 540
AciI CCGC 7 cut(s) 125, 240, 297, 735, 737, 793, 884
AclWI GGATC 1 cut(s) 290
AcoI YGGCCR 3 cut(s) 277, 846, 969
AcsI RAATTY 1 cut(s) 669
AcyI GRCGYC 2 cut(s) 147, 790
AfaI GTAC 4 cut(s) 854, 902, 923, 1153
AfiI CCNNNNNNNGG 4 cut(s) 271, 527, 757, 883
AgsI TTSAA 1 cut(s) 496
AluBI AGCT 7 cut(s) 355, 382, 395, 638, 817, 1004, 1255
AluI AGCT 7 cut(s) 355, 382, 395, 638, 817, 1004, 1255
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 4 cut(s) 154, 426, 686, 1121
Alw44I GTGCAC 1 cut(s) 1141
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 540
AoxI GGCC 8 cut(s) 3, 277, 307, 759, 846, 943, 969, 1082
ApaLI GTGCAC 1 cut(s) 1141
ApeKI GCWGC 2 cut(s) 379, 440
ApoI RAATTY 1 cut(s) 669
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 3 cut(s) 943, 1033, 1082
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 6 cut(s) 64, 229, 286, 461, 472, 823
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 1033
BaeGI GKGCMC 1 cut(s) 1145
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 2 cut(s) 587, 789
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 2 cut(s) 391, 427
BceAI ACGGC 2 cut(s) 292, 774
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 4 cut(s) 154, 426, 686, 1121
BfaI CTAG 5 cut(s) 311, 413, 602, 938, 1058
BfmI CTRYAG 1 cut(s) 1256
BfoI RGCGCY 1 cut(s) 793
BglI GCCNNNNNGGC 1 cut(s) 977
BisI GCNGC 4 cut(s) 380, 441, 735, 793
BlsI GCNGC 4 cut(s) 381, 442, 736, 794
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 1 cut(s) 1033
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 943, 1033, 1082
BmiI GGNNCC 4 cut(s) 589, 791, 944, 1035
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 3 cut(s) 261, 696, 760
BpmI CTGGAG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 988
BsaHI GRCGYC 2 cut(s) 147, 790
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 527, 757, 883
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 552, 729
BseAI TCCGGA 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 735
BseGI GGATG 7 cut(s) 98, 210, 490, 624, 892, 1193, 1240
BseLI CCNNNNNNNGG 4 cut(s) 271, 527, 757, 883
BseMI GCAATG 2 cut(s) 552, 729
BseMII CTCAG 4 cut(s) 218, 339, 648, 1122
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 4 cut(s) 187, 224, 247, 1148
BseSI GKGCMC 1 cut(s) 1145
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 2 cut(s) 391, 427
BseYI CCCAGC 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 737
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 8 cut(s) 5, 279, 309, 761, 848, 945, 971, 1084
BshNI GGYRCC 2 cut(s) 587, 789
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 1145
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 6 cut(s) 66, 280, 321, 541, 558, 845
BslI CCNNNNNNNGG 4 cut(s) 271, 527, 757, 883
BsmAI GTCTC 4 cut(s) 154, 426, 686, 1121
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 8 cut(s) 5, 279, 309, 761, 848, 945, 971, 1084
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp13I TCCGGA 1 cut(s) 540
Bsp1407I TGTACA 1 cut(s) 1151
Bsp143I GATC 2 cut(s) 282, 525
BspACI CCGC 7 cut(s) 125, 240, 297, 735, 737, 793, 884
BspANI GGCC 8 cut(s) 5, 279, 309, 761, 848, 945, 971, 1084
BspCNI CTCAG 4 cut(s) 217, 338, 647, 1123
BspEI TCCGGA 1 cut(s) 540
BspFNI CGCG 1 cut(s) 737
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 589, 791, 944, 1035
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 587, 789
BsrDI GCAATG 2 cut(s) 552, 729
BsrFI RCCGGY 1 cut(s) 844
BsrGI TGTACA 1 cut(s) 1151
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 735
BssMI GATC 2 cut(s) 282, 525
BssNI GRCGYC 2 cut(s) 147, 790
Bst4CI ACNGT 4 cut(s) 574, 655, 778, 835
Bst6I CTCTTC 1 cut(s) 1119
BstACI GRCGYC 2 cut(s) 147, 790
BstAUI TGTACA 1 cut(s) 1151
BstBAI YACGTR 1 cut(s) 988
BstC8I GCNNGC 2 cut(s) 397, 973
BstDEI CTNAG 5 cut(s) 204, 325, 634, 1029, 1131
BstDSI CCRYGG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 7 cut(s) 98, 210, 490, 624, 892, 1193, 1240
BstFNI CGCG 1 cut(s) 737
BstH2I RGCGCY 1 cut(s) 793
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 2 cut(s) 285, 528
BstMAI GTCTC 4 cut(s) 154, 426, 686, 1121
BstMBI GATC 2 cut(s) 282, 525
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 731, 890, 972, 977
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 1145
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 2 cut(s) 391, 427
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 8 cut(s) 5, 279, 309, 761, 848, 945, 971, 1084
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 7 cut(s) 98, 210, 490, 624, 892, 1193, 1240
BtsIMutI CAGTG 4 cut(s) 310, 660, 912, 1000
Cac8I GCNNGC 2 cut(s) 397, 973
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 844
Cfr13I GGNCC 3 cut(s) 943, 1033, 1082
Cfr42I CCGCGG 1 cut(s) 738
Csp6I GTAC 4 cut(s) 853, 901, 922, 1152
CviAII CATG 5 cut(s) 400, 425, 480, 500, 953
CviQI GTAC 4 cut(s) 853, 901, 922, 1152
DdeI CTNAG 5 cut(s) 204, 325, 634, 1029, 1131
DinI GGCGCC 1 cut(s) 791
DpnI GATC 2 cut(s) 284, 527
DpnII GATC 2 cut(s) 282, 525
EaeI YGGCCR 3 cut(s) 277, 846, 969
EagI CGGCCG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 1119
EclXI CGGCCG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 1033
Eco52I CGGCCG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 1033
EcoT22I ATGCAT 1 cut(s) 689
EgeI GGCGCC 1 cut(s) 791
EheI GGCGCC 1 cut(s) 791
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 5 cut(s) 403, 428, 483, 503, 956
FatI CATG 5 cut(s) 399, 424, 479, 499, 952
FauNDI CATATG 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 380, 441, 735, 793
FokI GGATG 7 cut(s) 85, 197, 497, 611, 899, 1180, 1247
Fsp4HI GCNGC 4 cut(s) 380, 441, 735, 793
FspBI CTAG 5 cut(s) 311, 413, 602, 938, 1058
GlaI GCGC 1 cut(s) 791
GluI GCNGC 4 cut(s) 380, 441, 735, 793
GsaI CCCAGC 1 cut(s) 1121
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 793
HaeIII GGCC 8 cut(s) 5, 279, 309, 761, 848, 945, 971, 1084
HapII CCGG 6 cut(s) 66, 280, 321, 541, 558, 845
HhaI GCGC 1 cut(s) 792
Hin1I GRCGYC 2 cut(s) 147, 790
Hin1II CATG 5 cut(s) 403, 428, 483, 503, 956
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 6 cut(s) 517, 747, 783, 838, 1007, 1159
HpaII CCGG 6 cut(s) 66, 280, 321, 541, 558, 845
HphI GGTGA 6 cut(s) 64, 229, 286, 461, 472, 823
Hpy166II GTNNAC 3 cut(s) 316, 366, 1143
Hpy188I TCNGA 5 cut(s) 328, 522, 530, 676, 766
Hpy188III TCNNGA 7 cut(s) 265, 385, 425, 541, 691, 865, 1163
Hpy8I GTNNAC 3 cut(s) 316, 366, 1143
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 6 cut(s) 112, 165, 169, 253, 451, 1107
HpyCH4III ACNGT 4 cut(s) 574, 655, 778, 835
HpyCH4IV ACGT 2 cut(s) 147, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 731, 890, 972, 977
HpyF3I CTNAG 5 cut(s) 204, 325, 634, 1029, 1131
HpySE526I ACGT 2 cut(s) 147, 987
Hsp92I GRCGYC 2 cut(s) 147, 790
Hsp92II CATG 5 cut(s) 403, 428, 483, 503, 956
HspAI GCGC 1 cut(s) 790
KasI GGCGCC 1 cut(s) 789
Kpn2I TCCGGA 1 cut(s) 540
KspI CCGCGG 1 cut(s) 738
Kzo9I GATC 2 cut(s) 282, 525
Lsp1109I GCAGC 2 cut(s) 391, 427
LweI GCATC 3 cut(s) 261, 696, 760
MaeI CTAG 5 cut(s) 311, 413, 602, 938, 1058
MaeII ACGT 2 cut(s) 147, 987
MaeIII GTNAC 4 cut(s) 835, 1073, 1096, 1189
MalI GATC 2 cut(s) 284, 527
MboI GATC 2 cut(s) 282, 525
MboII GAAGA 3 cut(s) 52, 535, 1136
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 1145
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 2 cut(s) 110, 669
MluNI TGGCCA 1 cut(s) 971
Mly113I GGCGCC 1 cut(s) 790
MlyI GAGTC 4 cut(s) 792, 832, 1001, 1168
MmeI TCCRAC 1 cut(s) 789
Mox20I TGGCCA 1 cut(s) 971
Mph1103I ATGCAT 1 cut(s) 689
MroI TCCGGA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 971
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 3 cut(s) 404, 585, 951
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 3 cut(s) 737, 884, 1004
MspI CCGG 6 cut(s) 66, 280, 321, 541, 558, 845
MspR9I CCNGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 4 cut(s) 731, 890, 972, 977
NarI GGCGCC 1 cut(s) 790
NciI CCSGG 1 cut(s) 559
NdeI CATATG 1 cut(s) 582
NdeII GATC 2 cut(s) 282, 525
NlaIII CATG 5 cut(s) 403, 428, 483, 503, 956
NlaIV GGNNCC 4 cut(s) 589, 791, 944, 1035
NmeAIII GCCGAG 1 cut(s) 736
NmuCI GTSAC 4 cut(s) 835, 1073, 1096, 1189
NsiI ATGCAT 1 cut(s) 689
PagI TCATGA 1 cut(s) 424
PfeI GAWTC 2 cut(s) 517, 747
PkrI GCNGC 4 cut(s) 381, 442, 736, 794
PleI GAGTC 4 cut(s) 791, 832, 1001, 1167
PluTI GGCGCC 1 cut(s) 793
PpsI GAGTC 4 cut(s) 791, 832, 1001, 1167
Ppu21I YACGTR 1 cut(s) 988
PpuMI RGGWCCY 1 cut(s) 1033
Psp5II RGGWCCY 1 cut(s) 1033
PspFI CCCAGC 1 cut(s) 1117
PspN4I GGNNCC 4 cut(s) 589, 791, 944, 1035
PspPI GGNCC 3 cut(s) 943, 1033, 1082
PspPPI RGGWCCY 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 4 cut(s) 854, 902, 923, 1153
RsaNI GTAC 4 cut(s) 853, 901, 922, 1152
RseI CAYNNNNRTG 3 cut(s) 404, 585, 951
SacII CCGCGG 1 cut(s) 738
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 380, 441, 735, 793
Sau3AI GATC 2 cut(s) 282, 525
Sau96I GGNCC 3 cut(s) 943, 1033, 1082
ScaI AGTACT 1 cut(s) 854
SchI GAGTC 4 cut(s) 792, 832, 1001, 1168
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 3 cut(s) 261, 696, 760
SfcI CTRYAG 1 cut(s) 1256
SfoI GGCGCC 1 cut(s) 791
Sfr303I CCGCGG 1 cut(s) 738
SgrBI CCGCGG 1 cut(s) 738
SinI GGWCC 1 cut(s) 1033
SmiMI CAYNNNNRTG 3 cut(s) 404, 585, 951
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 110, 669
SsiI CCGC 7 cut(s) 125, 240, 297, 735, 737, 793, 884
SspDI GGCGCC 1 cut(s) 789
SspMI CTAG 5 cut(s) 311, 413, 602, 938, 1058
StyD4I CCNGG 1 cut(s) 557
TaaI ACNGT 4 cut(s) 574, 655, 778, 835
TaiI ACGT 2 cut(s) 150, 990
TaqI TCGA 3 cut(s) 690, 781, 1251
TasI AATT 2 cut(s) 110, 669
TatI WGTACW 2 cut(s) 852, 1151
TauI GCSGC 2 cut(s) 737, 795
TfiI GAWTC 2 cut(s) 517, 747
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 4 cut(s) 310, 660, 919, 1000
TseFI GTSAC 4 cut(s) 835, 1073, 1096, 1189
TseI GCWGC 2 cut(s) 379, 440
Tsp45I GTSAC 4 cut(s) 835, 1073, 1096, 1189
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 2 cut(s) 236, 250
TspRI CASTG 4 cut(s) 310, 660, 919, 1000
VneI GTGCAC 1 cut(s) 1141
VpaK11BI GGWCC 1 cut(s) 1033
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 5 cut(s) 311, 413, 602, 938, 1058
ZraI GACGTC 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 854
Zsp2I ATGCAT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.