Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001993

Physical Location & Seq

Genomic Coordinates Forward (+)

54500062 .. 54504221

Gene Structure 4160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGATAGCTTCCAGTTGCAGGGTCCTTTTCAATTTCAGAGTGGGCCGAGTTCTGAAGTTTACTTGCACCTATGCTGCTTTGAAGCCTCTGAATCATCACTTGCCTCTGTTGGGTCACTGTGATTACCGTGTTTTGAGCTACAGCGTTAACATGGATGGTAGAAGACATAAGCGAAGCGGTGTTGACCATAACAACAAGCTCAATCTCGTATGGAGACCAGTCAGTAAACTCAGTACACAAGTCAGTTCCAATGAAGAATGCTCAGTAGTGGAGGTTACGGATAAGCTGGAAGAAGAAGTGCACTCTTGTTCGTCTACCAAGATTTCAAGTGCTCAAGATGACATAGAGATGGCTTCAGCAGTTACTGAAGCAACTAAGCTCACTACTTGTTCAAGTGCATCGCAAGATAATGAAGAAGATAAAGGTTTAGAAGGAGAAACAGTGCTTTTGACCGAAAAGCATTCAATTTCAGTTGAGGTTGGGGCTTCTTTGCATCGCTTTATCAGAGGAAAAGGAGGATCTACTCAGAAAATGATTGAAGATGAGACAGGAGTGAAGATTAAAATCCCTTTGTCAAACAAAGAGGATTCCATTATTATTGAAGGCCTCTCAAGTGAAAGTGTATCTAGAGCTTCAGAGAAGATGCAGGCTATAATTGATGAGGCAGTGAAAAGCCCAAGTCTTGATTACTCTCACTTCATTTCACTTCCCTTAGCAATACATCCTGAATTAGTTGATAAGCTTGTCAACTTTCAGAACTCCATTCTAGGAATTACTGATTCTTCCCAGGGTGAGAATCTGGACGGTGGTTCGAATGAAGATGATTCCAATAATGAAGATGAAGATCAAAAGTTAAAGAAAGGATCTGATGTTGCAGTTGAACTTAAAGCTGAACCATCAAAGTCTCCTACCCTATCTGACTTGGGAATTGAGAAATCAATCTTTATTAAACCGAAAACATTTCACCTAACTGTGCTCATGTTGAAGTTGTGGAACAAGGACAGAGTTCATGCAGCTACTGAGAGCATCTCTTCGGAAGTGATGGAAGCCTTAGATAATCGCGCTCTATCCATAAGACTCAAGGGACTGAATTGTATGAGAGGTTCTTTTGCCAAAGCTGGTGTTCTATATGCGCCCGTTGAAGAAATTGGCAATGAGGGCCGACTTATGCGCGCCTGTCAAGTCATTATTGATGCATTTGTTAAAGCAGGGCTTGTTCTAGAGAAAGATGCAAATCAGAAATTAAAGCTCCATGCAACGGTGATGAAGGCAAGGCATGGACAAAGGAATCAAAAGAGAAAATTTAGTACCTTTGATGCCCGTGGCATATATAAGCAGTATGGATCCGAGGAATGGGGAGAGTATCTTATCCGTGAAGCTCATCTTTCACAAAGGTTTGTGTACGATGACAAGGGATATTATCATTGTTGTGCTTCTATACCTTTTCCAGAAATATGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AKAP7_NLS Auxin_canalis KH_1 PH_2

Protein Analysis

487

Amino Acids

54.11

Weight (kDa)

6.27

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	156 - 216	1e-11	KH domain
AKAP7_NLS	PF10469	230 - 482	1.6e-49	AKAP7 2'5' RNA ligase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230 AT3G16230
fragaria_vesca	FvH4_6g31950 FvH4_6g31960 FvH4_6g31960 FvH4_6g31960
malus_domestica	MD09G1207800.v1.1 MD17G1188900.v1.1
prunus_persica	Prupe.3G063900_v2.0.a1 Prupe.3G063900_v2.0.a1
pyrus_communis	pycom09g12390 pycom17g19720
rosa_chinensis	RchiOBHm_Chr2g0139371 RchiOBHm_Chr2g0139461
rosa_laevigata	RLG00000019809 RLG00000019812
rosa_multiflora	Rmu_co8444677.1_g000001 Rmu_co8444769.1_g000001 Rmu_sc0001983.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105420 Rroxscaffold_2G00105430
rosa_rugosa	Rorug02G0358100
rosa_samantha	Rh2AG407200 Rh2AG407400 Rh2BG417500 Rh2BG418000 Rh2CG393200 Rh2CG393400 Rh2DG426600 Rh2DG426800
rosa_wichuraiana	Rw2G032990 Rw2G033000 Rw2G033250 Rw2G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	314
AccII	CGCG	2 cut(s)	1062, 1173
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	4 cut(s)	526, 871, 1338, 1351
AcsI	RAATTY	1 cut(s)	1301
AcuI	CTGAAG	4 cut(s)	74, 339, 387, 618
AfaI	GTAC	3 cut(s)	235, 1309, 1403
AfiI	CCNNNNNNNGG	4 cut(s)	18, 110, 1258, 1353
AjnI	CCWGG	1 cut(s)	786
Alw21I	GWGCWC	3 cut(s)	303, 334, 978
Alw26I	GTCTC	3 cut(s)	208, 539, 909
Alw44I	GTGCAC	1 cut(s)	299
AlwI	GGATC	4 cut(s)	526, 871, 1338, 1351
AlwNI	CAGNNNCTG	2 cut(s)	365, 1019
AoxI	GGCC	3 cut(s)	43, 604, 1159
ApaLI	GTGCAC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	74, 1013
ApoI	RAATTY	1 cut(s)	1301
AspLEI	GCGC	4 cut(s)	1064, 1135, 1173, 1175
AspS9I	GGNCC	3 cut(s)	22, 43, 1159
AsuHPI	GGTGA	3 cut(s)	803, 956, 1273
AsuII	TTCGAA	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	1343
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	3 cut(s)	303, 334, 978
BbvI	GCAGC	2 cut(s)	61, 1025
BccI	CCATC	4 cut(s)	149, 343, 904, 1036
BciT130I	CCWGG	1 cut(s)	788
BcoDI	GTCTC	3 cut(s)	208, 539, 909
BfaI	CTAG	3 cut(s)	627, 767, 1220
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	75, 1014
BlsI	GCNGC	2 cut(s)	76, 1015
Bme1390I	CCNGG	1 cut(s)	788
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	22, 43, 1159
BmiI	GGNNCC	2 cut(s)	23, 1345
BmrFI	CCNGG	1 cut(s)	788
BmsI	GCATC	7 cut(s)	407, 502, 633, 1035, 1183, 1219, 1306
BpiI	GAAGAC	1 cut(s)	169
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
Bpu10I	CCTNAGC	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	812
BpuEI	CTTGAG	3 cut(s)	318, 595, 1064
BsaBI	GATNNNNATC	3 cut(s)	563, 843, 1233
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	4 cut(s)	786, 787, 1321, 1347
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 110, 1258, 1353
Bse1I	ACTGG	2 cut(s)	12, 218
Bse3DI	GCAATG	1 cut(s)	1159
Bse8I	GATNNNNATC	3 cut(s)	563, 843, 1233
BseBI	CCWGG	1 cut(s)	788
BseDI	CCNNGG	4 cut(s)	786, 787, 1321, 1347
BseGI	GGATG	2 cut(s)	160, 721
BseJI	GATNNNNATC	3 cut(s)	563, 843, 1233
BseLI	CCNNNNNNNGG	4 cut(s)	18, 110, 1258, 1353
BseMI	GCAATG	1 cut(s)	1159
BseMII	CTCAG	4 cut(s)	244, 276, 539, 1011
BseNI	ACTGG	2 cut(s)	12, 218
BsePI	GCGCGC	1 cut(s)	1171
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	61, 1025
Bsh1236I	CGCG	2 cut(s)	1062, 1173
BshFI	GGCC	3 cut(s)	45, 606, 1161
BsiHKAI	GWGCWC	3 cut(s)	303, 334, 978
BslFI	GGGAC	1 cut(s)	1098
BslI	CCNNNNNNNGG	4 cut(s)	18, 110, 1258, 1353
BsmAI	GTCTC	3 cut(s)	208, 539, 909
BsmFI	GGGAC	1 cut(s)	1098
BsmI	GAATGC	2 cut(s)	263, 460
BsnI	GGCC	3 cut(s)	45, 606, 1161
Bso31I	GGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	812
Bsp1286I	GDGCHC	3 cut(s)	303, 334, 978
Bsp143I	GATC	4 cut(s)	518, 844, 863, 1343
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	45, 606, 1161
BspCNI	CTCAG	4 cut(s)	243, 275, 538, 1012
BspFNI	CGCG	2 cut(s)	1062, 1173
BspLI	GGNNCC	2 cut(s)	23, 1345
BspPI	GGATC	4 cut(s)	526, 871, 1338, 1351
BspT104I	TTCGAA	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	1159
BsrI	ACTGG	2 cut(s)	12, 218
BssECI	CCNNGG	4 cut(s)	786, 787, 1321, 1347
BssHII	GCGCGC	1 cut(s)	1171
BssMI	GATC	4 cut(s)	518, 844, 863, 1343
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	6 cut(s)	119, 128, 442, 806, 973, 1261
Bst6I	CTCTTC	1 cut(s)	1036
BstBI	TTCGAA	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	648, 1173
BstDEI	CTNAG	7 cut(s)	230, 262, 375, 525, 712, 1020, 1051
BstDSI	CCRYGG	1 cut(s)	1321
BstF5I	GGATG	2 cut(s)	160, 721
BstFNI	CGCG	2 cut(s)	1062, 1173
BstHHI	GCGC	4 cut(s)	1064, 1135, 1173, 1175
BstKTI	GATC	4 cut(s)	521, 847, 866, 1346
BstMAI	GTCTC	3 cut(s)	208, 539, 909
BstMBI	GATC	4 cut(s)	518, 844, 863, 1343
BstMWI	GCNNNNNNNGC	1 cut(s)	1158
BstNI	CCWGG	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	786
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	2 cut(s)	1062, 1173
BstV1I	GCAGC	2 cut(s)	61, 1025
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	3 cut(s)	518, 863, 1343
BstYI	RGATCY	3 cut(s)	518, 863, 1343
BsuRI	GGCC	3 cut(s)	45, 606, 1161
BtgI	CCRYGG	1 cut(s)	1321
BtgZI	GCGATG	2 cut(s)	384, 479
BtsCI	GGATG	2 cut(s)	160, 721
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	3 cut(s)	115, 447, 672
Cac8I	GCNNGC	2 cut(s)	648, 1173
CaiI	CAGNNNCTG	2 cut(s)	365, 1019
CfoI	GCGC	4 cut(s)	1064, 1135, 1173, 1175
Cfr13I	GGNCC	3 cut(s)	22, 43, 1159
Csp6I	GTAC	3 cut(s)	234, 1308, 1402
CviAII	CATG	5 cut(s)	151, 979, 1010, 1253, 1277
CviQI	GTAC	3 cut(s)	234, 1308, 1402
DdeI	CTNAG	7 cut(s)	230, 262, 375, 525, 712, 1020, 1051
DpnI	GATC	4 cut(s)	520, 846, 865, 1345
DpnII	GATC	4 cut(s)	518, 844, 863, 1343
Eam1104I	CTCTTC	1 cut(s)	1036
EarI	CTCTTC	1 cut(s)	1036
Eco147I	AGGCCT	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	4 cut(s)	74, 339, 387, 618
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	786
EcoT22I	ATGCAT	1 cut(s)	1198
FaeI	CATG	5 cut(s)	154, 982, 1013, 1256, 1280
FalI	AAGNNNNNCTT	4 cut(s)	1197, 1229, 1368, 1400
FaqI	GGGAC	1 cut(s)	1098
FatI	CATG	5 cut(s)	150, 978, 1009, 1252, 1276
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	75, 1014
FokI	GGATG	2 cut(s)	167, 708
Fsp4HI	GCNGC	2 cut(s)	75, 1014
FspBI	CTAG	3 cut(s)	627, 767, 1220
GlaI	GCGC	4 cut(s)	1063, 1134, 1172, 1174
GluI	GCNGC	2 cut(s)	75, 1014
HaeIII	GGCC	3 cut(s)	45, 606, 1161
HhaI	GCGC	4 cut(s)	1064, 1135, 1173, 1175
Hin1II	CATG	5 cut(s)	154, 982, 1013, 1256, 1280
Hin6I	GCGC	4 cut(s)	1062, 1133, 1171, 1173
HinP1I	GCGC	4 cut(s)	1062, 1133, 1171, 1173
HincII	GTYRAC	3 cut(s)	148, 184, 748
HindII	GTYRAC	3 cut(s)	148, 184, 748
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	7 cut(s)	91, 587, 779, 796, 824, 1077, 1288
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	3 cut(s)	803, 956, 1273
Hpy166II	GTNNAC	9 cut(s)	60, 148, 184, 227, 236, 301, 315, 748, 1402
Hpy188III	TCNNGA	7 cut(s)	335, 627, 683, 725, 800, 1220, 1448
Hpy8I	GTNNAC	9 cut(s)	60, 148, 184, 227, 236, 301, 315, 748, 1402
HpyAV	CCTTC	3 cut(s)	425, 596, 1261
HpyCH4III	ACNGT	6 cut(s)	119, 128, 442, 806, 973, 1261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1158
HpyF3I	CTNAG	7 cut(s)	230, 262, 375, 525, 712, 1020, 1051
Hsp92II	CATG	5 cut(s)	154, 982, 1013, 1256, 1280
HspAI	GCGC	4 cut(s)	1062, 1133, 1171, 1173
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	518, 844, 863, 1343
LmnI	GCTCC	1 cut(s)	1254
Lsp1109I	GCAGC	2 cut(s)	61, 1025
LweI	GCATC	7 cut(s)	407, 502, 633, 1035, 1183, 1219, 1306
MaeI	CTAG	3 cut(s)	627, 767, 1220
MaeIII	GTNAC	3 cut(s)	113, 274, 361
MalI	GATC	4 cut(s)	520, 846, 865, 1345
MboI	GATC	4 cut(s)	518, 844, 863, 1343
MflI	RGATCY	3 cut(s)	518, 863, 1343
MhlI	GDGCHC	3 cut(s)	303, 334, 978
MlyI	GAGTC	1 cut(s)	1071
Mph1103I	ATGCAT	1 cut(s)	1198
MseI	TTAA	7 cut(s)	147, 561, 854, 885, 948, 1203, 1244
MslI	CAYNNNNRTG	2 cut(s)	347, 1428
MspR9I	CCNGG	1 cut(s)	788
Mva1269I	GAATGC	2 cut(s)	263, 460
MvaI	CCWGG	1 cut(s)	788
MvnI	CGCG	2 cut(s)	1062, 1173
MwoI	GCNNNNNNNGC	1 cut(s)	1158
NdeII	GATC	4 cut(s)	518, 844, 863, 1343
NlaIII	CATG	5 cut(s)	154, 982, 1013, 1256, 1280
NlaIV	GGNNCC	2 cut(s)	23, 1345
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	1198
NspV	TTCGAA	1 cut(s)	812
PasI	CCCWGGG	1 cut(s)	787
PauI	GCGCGC	1 cut(s)	1171
PceI	AGGCCT	1 cut(s)	606
PctI	GAATGC	2 cut(s)	263, 460
PfeI	GAWTC	6 cut(s)	91, 587, 779, 796, 824, 1288
PkrI	GCNGC	2 cut(s)	76, 1015
PleI	GAGTC	1 cut(s)	1071
PpsI	GAGTC	1 cut(s)	1071
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	786
PspN4I	GGNNCC	2 cut(s)	23, 1345
PspPI	GGNCC	3 cut(s)	22, 43, 1159
PspPPI	RGGWCCY	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	1087, 1119
PstNI	CAGNNNCTG	2 cut(s)	365, 1019
PsuI	RGATCY	3 cut(s)	518, 863, 1343
PteI	GCGCGC	1 cut(s)	1171
RsaI	GTAC	3 cut(s)	235, 1309, 1403
RsaNI	GTAC	3 cut(s)	234, 1308, 1402
RseI	CAYNNNNRTG	2 cut(s)	347, 1428
SaqAI	TTAA	7 cut(s)	147, 561, 854, 885, 948, 1203, 1244
SatI	GCNGC	2 cut(s)	75, 1014
Sau3AI	GATC	4 cut(s)	518, 844, 863, 1343
Sau96I	GGNCC	3 cut(s)	22, 43, 1159
SchI	GAGTC	1 cut(s)	1071
ScrFI	CCNGG	1 cut(s)	788
SduI	GDGCHC	3 cut(s)	303, 334, 978
SfaNI	GCATC	7 cut(s)	407, 502, 633, 1035, 1183, 1219, 1306
SfcI	CTRYAG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	812
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	347, 1428
SmlI	CTYRAG	3 cut(s)	333, 610, 1079
SmoI	CTYRAG	3 cut(s)	333, 610, 1079
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	3 cut(s)	627, 767, 1220
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	786
TaaI	ACNGT	6 cut(s)	119, 128, 442, 806, 973, 1261
TaqI	TCGA	1 cut(s)	812
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	6 cut(s)	91, 587, 779, 796, 824, 1288
Tru1I	TTAA	7 cut(s)	147, 561, 854, 885, 948, 1203, 1244
Tru9I	TTAA	7 cut(s)	147, 561, 854, 885, 948, 1203, 1244
TscAI	CASTG	3 cut(s)	122, 447, 672
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	74, 1013
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	8 cut(s)	267, 426, 688, 831, 849, 855, 998, 1280
TspGWI	ACGGA	2 cut(s)	293, 1361
TspRI	CASTG	3 cut(s)	122, 447, 672
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	1301
XbaI	TCTAGA	2 cut(s)	626, 1219
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	3 cut(s)	627, 767, 1220
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.