Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006657

Physical Location & Seq

Genomic Coordinates Forward (+)

35700963 .. 35703103

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G406500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGACAGATCCAAGGGCTGTTGTACCATACCATGACCCATACGATAGCGGCCCGTATACCGAAATCATGAACTTGTTGAATGATTCTGAACATCCAAGAATTGATGAGAATAATATACCACCATTGGAGACTCCTATGTTTGACGAAGAAATTCAAGACGTTGATGAGCCTTTAATGGATCAGGCAATGTGGGATTTCATCTATGGTTCTGATAATGGAGGAGAGGGTATTAATTCACGAGCGGGTCCTTCGCAGATTTTCACAGAATCGAGCGGTACTAATCCCCCAAGAGGAGATGGCAATGAACGGAATCATGGTTTTGGCAATGTGAGGCCACTTTCAGTTTGGCCTCTGTCATCAGACCCCATTAACTGTACTTTTTGCCAAGTTTTTAGGGAAATAGTACACTTCAATAGCGACAACGTTATGAAACTTGAAATTCACGGAAGACTCGGTGTGATCTCTCACGCAATTCTTCAGAGTCGACCCAATGCCAATGTGAATTCTTCTGGCAATCATCAATATCAAATGCTTGATTTTTGCAAGACACCAGGGGAGGAGGTGAAGCAATTTCTGATGCAGTACTGCTTAGAAAGAAAGCTAGAGGGGTACATTATGCAGCAAGATCCATTGACATTCTTTTATGAGGCACTCTGCGTTGGAATGGATTGGGATGCCATTCTGAACCCCCCCGATGACTTCGATTTTCCACCATCTCCACCTGATTCAGGAACAGCAGGTGATATGGAACAACCTGCTGCAGTTCAACCAGAGGCTGCCGAGCATGAGATTGAGACGAATCCTAGGATTTCCCTTGCAGAACAGAGGGAGAGAACAGCAAACATGACATTGGATGATCTTCGTGATTACGTCCATCTTCCCATCGAAAAAGCTGCTCGGAGATTGAATGTCTGCCCAACTGTAGTCAAAAGGATATGCCGCCGGAATGGATTACGTAGATGGCCTTCTAGAAAGATTACAAGCATTAATAGGCAAATTTCAAGGTTAAGACCAAGTTTAGATTCAGATGATGCAGAGACAAGGGTGCATGCTGAAGCTGAAATCTCTAGGCTTGAAAGAGAAATAGCTGAACTTGTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWP-RK

Protein Analysis

368

Amino Acids

41.67

Weight (kDa)

4.74

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16100 AT5G16100
fragaria_vesca	FvH4_5g32040 FvH4_7g07010 FvH4_7g08730
malus_domestica	MD08G1069500.v1.1 MD15G1052600.v1.1
prunus_persica	Prupe.1G406500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0228051
rosa_laevigata	RLG00000001592 RLG00000028942
rosa_multiflora	Rmu_ssc0000434.1_g000038
rosa_roxburghii	Rroxscaffold_3G00231600 Rroxscaffold_4G00310200
rosa_rugosa	Rorug01G0170100 Rorug07G0245700
rosa_samantha	Rh1AG186700 Rh1BG153100 Rh1CG172200 Rh1DG185400 Rh7AG399500 Rh7BG380900 Rh7CG417600 Rh7DG395100
rosa_wichuraiana	Rw1G015400 Rw7G033200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
Acc36I	ACCTGC	2 cut(s)	728, 763
AccBSI	CCGCTC	2 cut(s)	242, 273
AccI	GTMKAC	2 cut(s)	56, 484
AciI	CCGC	4 cut(s)	48, 242, 273, 940
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	3 cut(s)	2, 186, 620
AcsI	RAATTY	4 cut(s)	150, 438, 502, 996
AcuI	CTGAAG	2 cut(s)	461, 1074
AfaI	GTAC	6 cut(s)	24, 277, 376, 405, 584, 611
AfiI	CCNNNNNNNGG	2 cut(s)	290, 728
AgsI	TTSAA	8 cut(s)	79, 155, 412, 437, 767, 907, 1002, 1076
AjnI	CCWGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	4 cut(s)	601, 893, 1058, 1088
AluI	AGCT	4 cut(s)	601, 893, 1058, 1088
Alw26I	GTCTC	3 cut(s)	122, 788, 1031
AlwI	GGATC	3 cut(s)	2, 186, 620
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	4 cut(s)	49, 332, 347, 962
ApeKI	GCWGC	4 cut(s)	619, 758, 776, 893
ApoI	RAATTY	4 cut(s)	150, 438, 502, 996
AseI	ATTAAT	2 cut(s)	231, 987
Asp700I	GAANNNNTTC	1 cut(s)	150
AspA2I	CCTAGG	1 cut(s)	803
AspS9I	GGNCC	2 cut(s)	50, 245
AsuHPI	GGTGA	2 cut(s)	574, 752
AvaII	GGWCC	1 cut(s)	245
AvrII	CCTAGG	1 cut(s)	803
BarI	GAAGNNNNNNTAC	2 cut(s)	949, 981
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	631, 745, 763, 880
BccI	CCATC	5 cut(s)	290, 721, 882, 890, 954
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	122, 788, 1031
BfaI	CTAG	4 cut(s)	602, 804, 969, 1068
BfmI	CTRYAG	2 cut(s)	759, 921
BfuAI	ACCTGC	2 cut(s)	728, 763
BisI	GCNGC	6 cut(s)	49, 620, 759, 777, 894, 940
BlnI	CCTAGG	1 cut(s)	803
BlsI	GCNGC	6 cut(s)	50, 621, 760, 778, 895, 941
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	50, 245
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	567, 664, 1021
BpiI	GAAGAC	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	956
BsaJI	CCNNGG	3 cut(s)	11, 551, 803
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 728
Bse3DI	GCAATG	3 cut(s)	192, 307, 331
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	11, 551, 803
BseGI	GGATG	3 cut(s)	91, 679, 859
BseLI	CCNNNNNNNGG	2 cut(s)	290, 728
BseMI	GCAATG	3 cut(s)	192, 307, 331
BseRI	GAGGAG	3 cut(s)	234, 306, 572
BseXI	GCAGC	4 cut(s)	631, 745, 763, 880
BshFI	GGCC	4 cut(s)	51, 334, 349, 964
BsiSI	CCGG	1 cut(s)	943
BslFI	GGGAC	1 cut(s)	1082
BslI	CCNNNNNNNGG	2 cut(s)	290, 728
BsmAI	GTCTC	3 cut(s)	122, 788, 1031
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	1082
BsnI	GGCC	4 cut(s)	51, 334, 349, 964
Bsp143I	GATC	5 cut(s)	7, 178, 459, 625, 856
BspACI	CCGC	4 cut(s)	48, 242, 273, 940
BspANI	GGCC	4 cut(s)	51, 334, 349, 964
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	2 cut(s)	728, 763
BspPI	GGATC	3 cut(s)	2, 186, 620
BsrBI	CCGCTC	2 cut(s)	242, 273
BsrDI	GCAATG	3 cut(s)	192, 307, 331
BssECI	CCNNGG	3 cut(s)	11, 551, 803
BssMI	GATC	5 cut(s)	7, 178, 459, 625, 856
BssNAI	GTATAC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	11, 803
Bst1107I	GTATAC	1 cut(s)	57
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	374, 922
BstBAI	YACGTR	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	1050
BstDEI	CTNAG	1 cut(s)	589
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	3 cut(s)	91, 679, 859
BstKTI	GATC	5 cut(s)	10, 181, 462, 628, 859
BstMAI	GTCTC	3 cut(s)	122, 788, 1031
BstMBI	GATC	5 cut(s)	7, 178, 459, 625, 856
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	1052
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	2 cut(s)	759, 921
BstSNI	TACGTA	1 cut(s)	956
BstV1I	GCAGC	4 cut(s)	631, 745, 763, 880
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	2 cut(s)	7, 625
BstYI	RGATCY	2 cut(s)	7, 625
BstZ17I	GTATAC	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	51, 334, 349, 964
BtsCI	GGATG	3 cut(s)	91, 679, 859
BveI	ACCTGC	2 cut(s)	728, 763
Cac8I	GCNNGC	1 cut(s)	1050
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	50, 245
Csp6I	GTAC	6 cut(s)	23, 276, 375, 404, 583, 610
CviAII	CATG	6 cut(s)	32, 67, 314, 785, 844, 1049
CviQI	GTAC	6 cut(s)	23, 276, 375, 404, 583, 610
DdeI	CTNAG	1 cut(s)	589
DpnI	GATC	5 cut(s)	9, 180, 461, 627, 858
DpnII	GATC	5 cut(s)	7, 178, 459, 625, 856
Eco105I	TACGTA	1 cut(s)	956
Eco130I	CCWWGG	2 cut(s)	11, 803
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	461, 1074
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	11, 803
ErhI	CCWWGG	2 cut(s)	11, 803
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	6 cut(s)	35, 70, 317, 788, 847, 1052
FaqI	GGGAC	1 cut(s)	1082
FatI	CATG	6 cut(s)	31, 66, 313, 784, 843, 1048
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	56, 484
Fnu4HI	GCNGC	6 cut(s)	49, 620, 759, 777, 894, 940
FokI	GGATG	3 cut(s)	78, 686, 866
Fsp4HI	GCNGC	6 cut(s)	49, 620, 759, 777, 894, 940
FspBI	CTAG	4 cut(s)	602, 804, 969, 1068
GluI	GCNGC	6 cut(s)	49, 620, 759, 777, 894, 940
HaeIII	GGCC	4 cut(s)	51, 334, 349, 964
HapII	CCGG	1 cut(s)	943
Hin1II	CATG	6 cut(s)	35, 70, 317, 788, 847, 1052
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	9 cut(s)	83, 130, 266, 310, 450, 481, 725, 799, 1022
HpaII	CCGG	1 cut(s)	943
HphI	GGTGA	2 cut(s)	574, 752
Hpy166II	GTNNAC	3 cut(s)	57, 406, 485
Hpy188I	TCNGA	8 cut(s)	88, 211, 361, 480, 576, 684, 900, 1027
Hpy188III	TCNNGA	6 cut(s)	67, 155, 237, 729, 863, 969
Hpy8I	GTNNAC	3 cut(s)	57, 406, 485
HpyAV	CCTTC	2 cut(s)	258, 975
HpyCH4III	ACNGT	2 cut(s)	374, 922
HpyCH4IV	ACGT	4 cut(s)	159, 423, 870, 955
HpyCH4V	TGCA	7 cut(s)	543, 580, 619, 761, 818, 1034, 1048
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	4 cut(s)	159, 423, 870, 955
Hsp92II	CATG	6 cut(s)	35, 70, 317, 788, 847, 1052
Kzo9I	GATC	5 cut(s)	7, 178, 459, 625, 856
Lsp1109I	GCAGC	4 cut(s)	631, 745, 763, 880
LweI	GCATC	3 cut(s)	567, 664, 1021
MaeI	CTAG	4 cut(s)	602, 804, 969, 1068
MaeII	ACGT	4 cut(s)	159, 423, 870, 955
MalI	GATC	5 cut(s)	9, 180, 461, 627, 858
MbiI	CCGCTC	2 cut(s)	242, 273
MboI	GATC	5 cut(s)	7, 178, 459, 625, 856
MboII	GAAGA	6 cut(s)	158, 459, 467, 498, 851, 869
MflI	RGATCY	2 cut(s)	7, 625
MluCI	AATT	8 cut(s)	99, 150, 232, 438, 471, 502, 569, 996
MlyI	GAGTC	3 cut(s)	124, 444, 490
MmeI	TCCRAC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	5 cut(s)	173, 231, 369, 987, 1007
MspI	CCGG	1 cut(s)	943
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
NdeII	GATC	5 cut(s)	7, 178, 459, 625, 856
NlaIII	CATG	6 cut(s)	35, 70, 317, 788, 847, 1052
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	805
NspI	RCATGY	1 cut(s)	1052
PaeI	GCATGC	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	66
PaqCI	CACCTGC	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	6 cut(s)	83, 266, 310, 725, 799, 1022
PkrI	GCNGC	6 cut(s)	50, 621, 760, 778, 895, 941
PleI	GAGTC	3 cut(s)	124, 444, 489
PpsI	GAGTC	3 cut(s)	124, 444, 489
Ppu21I	YACGTR	1 cut(s)	956
PpuMI	RGGWCCY	1 cut(s)	245
PshBI	ATTAAT	2 cut(s)	231, 987
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	50, 245
PspPPI	RGGWCCY	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	7, 625
RsaI	GTAC	6 cut(s)	24, 277, 376, 405, 584, 611
RsaNI	GTAC	6 cut(s)	23, 276, 375, 404, 583, 610
SalI	GTCGAC	1 cut(s)	483
SaqAI	TTAA	5 cut(s)	173, 231, 369, 987, 1007
SatI	GCNGC	6 cut(s)	49, 620, 759, 777, 894, 940
Sau3AI	GATC	5 cut(s)	7, 178, 459, 625, 856
Sau96I	GGNCC	2 cut(s)	50, 245
ScaI	AGTACT	1 cut(s)	584
SchI	GAGTC	3 cut(s)	124, 444, 490
ScrFI	CCNGG	1 cut(s)	552
SfaNI	GCATC	3 cut(s)	567, 664, 1021
SfcI	CTRYAG	2 cut(s)	759, 921
SinI	GGWCC	1 cut(s)	245
SnaBI	TACGTA	1 cut(s)	956
SphI	GCATGC	1 cut(s)	1052
Sse9I	AATT	8 cut(s)	99, 150, 232, 438, 471, 502, 569, 996
SsiI	CCGC	4 cut(s)	48, 242, 273, 940
SspMI	CTAG	4 cut(s)	602, 804, 969, 1068
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	2 cut(s)	11, 803
TaaI	ACNGT	2 cut(s)	374, 922
TaiI	ACGT	4 cut(s)	162, 426, 873, 958
TaqI	TCGA	4 cut(s)	269, 484, 702, 885
TasI	AATT	8 cut(s)	99, 150, 232, 438, 471, 502, 569, 996
TatI	WGTACW	3 cut(s)	374, 403, 582
TauI	GCSGC	2 cut(s)	51, 942
TfiI	GAWTC	6 cut(s)	83, 266, 310, 725, 799, 1022
Tru1I	TTAA	5 cut(s)	173, 231, 369, 987, 1007
Tru9I	TTAA	5 cut(s)	173, 231, 369, 987, 1007
TseI	GCWGC	4 cut(s)	619, 758, 776, 893
TspDTI	ATGAA	4 cut(s)	83, 187, 318, 443
TspGWI	ACGGA	2 cut(s)	322, 459
VpaK11BI	GGWCC	1 cut(s)	245
VspI	ATTAAT	2 cut(s)	231, 987
XagI	CCTNNNNNAGG	1 cut(s)	726
XapI	RAATTY	4 cut(s)	150, 438, 502, 996
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	1 cut(s)	1052
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XmaJI	CCTAGG	1 cut(s)	803
XmiI	GTMKAC	2 cut(s)	56, 484
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	4 cut(s)	602, 804, 969, 1068
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.