RLG00000001592

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006657
Physical Location & Seq
Forward (+)
17920709 .. 17922289
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001592

Sequence Viewer

Length: 1149 bp
ATGACAGATTCTCCATGGGCTGCTGTGCCTTACCATGACCCTTATGATCACGAAGTCCCCGACGTTCTGAATTTCATTAATGATACTCCTGATCCAACCCTTGACACATTGTTCGACGGTGGAGTAGTTCCTTCTTTCTCTCATCAATATCCAATTCCTCAGTTTGATAATGGAATCCAAGATTTTCCCATGTCCCCAATGTGGGATATGGGCAACAATTATAATGGCGGAGGGAATAATACTATTTCAGTACTAGCGGATCATCCTTCACAGTGTTCCGGACGAGGAGGAGGAGAATCGGGTTTTGATCAGAATTCGGGGTTGGGGTTTGGGAGTAATGTGATGCCACCTCCGGTTTGGGCTCCACCACCAATCCCCTTCAGTTGCTGCGGTTGCCAAGTTCTAAGGGAAATTGTTCACTTCAATCGCAATTATATTATGACACTTGAAATCCATGGAAGACTCGGTGCCATCTGTCATGCAATTCAAGAAAGCCGCGCCAATTACTTGTACGATTCCAGTGCTTCTATTGAGCCTCACTATCAGAACTTTGACTTTTGCAATAAAAACATTGAGGAAGTGAAGCAGTTTCTGACGCAATACTGCTTAGAGCGAAAGGTAGAAGGCTACATTTTGCAGCAAGATCCTCTGCAAGCATTTTATCAGACTCTCTGTGTTGGTATGGATGGTGAGTGGGATGATATTCTTAGTTATCCCGACGAATTCATTCCTGAGGACTCGGACACTACCGACGACTTCATTTCTCCTAATTCAGAAATGGCGGAAGAAATGGAACAACCTGTCGATGAGGTGACCGTGAATATGAAAGGGAAGGGTCCTAGGCTTCCCAGGTTTTCCCTTGCAGAACAGAGGGAGAGAGCAGCAAAAATGAAATTAAATGATCTTCGTGCTTACTTCCATCTCACCATTGAAGAGGCTTCTGAGCAATTGGGTTTTTGCCCAACTGTTGTCAAGAGGATCTGCCGCAAGTTTGGAGTAAGCAGGTGGCCTGCTAGAAAGATCAAAAGCATTGAGAAGAGAATATCAAGCTTGAGGCCGCTTTTGAATTCATATAGTGATAGCACCAGGGTCCATGTTGCAGCTGAAATTAAAAGGCTTGAAAGAGAAGTAGCCCGACTTGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

383

Amino Acids

43.22

Weight (kDa)

4.88

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 296 - 344 9.9e-22 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AarI CACCTGC 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 993
AccB1I GGYRCC 1 cut(s) 467
AccII CGCG 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 7 cut(s) 228, 257, 390, 496, 782, 985, 1058
AclWI GGATC 4 cut(s) 86, 267, 638, 986
AcsI RAATTY 4 cut(s) 70, 313, 722, 1066
AcuI CTGAAG 1 cut(s) 364
AfaI GTAC 2 cut(s) 252, 512
AfiI CCNNNNNNNGG 2 cut(s) 201, 202
AgsI TTSAA 6 cut(s) 424, 449, 488, 932, 1066, 1121
AjnI CCWGG 2 cut(s) 848, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 2 cut(s) 1050, 1103
AluI AGCT 2 cut(s) 1050, 1103
AlwI GGATC 4 cut(s) 86, 267, 638, 986
AlwNI CAGNNNCTG 2 cut(s) 387, 592
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 1007, 1055
ApeKI GCWGC 5 cut(s) 20, 387, 637, 881, 1100
ApoI RAATTY 4 cut(s) 70, 313, 722, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 2 cut(s) 414, 726
AspA2I CCTAGG 1 cut(s) 839
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 2 cut(s) 836, 1090
AsuHPI GGTGA 3 cut(s) 701, 823, 916
AvaII GGWCC 2 cut(s) 836, 1090
AvrII CCTAGG 1 cut(s) 839
AxyI CCTNAGG 1 cut(s) 732
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 5 cut(s) 7, 374, 649, 893, 1112
BccI CCATC 3 cut(s) 479, 680, 927
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 2 cut(s) 850, 1087
BclI TGATCA 2 cut(s) 46, 307
BfaI CTAG 3 cut(s) 254, 840, 1014
BfuAI ACCTGC 1 cut(s) 993
BisI GCNGC 8 cut(s) 21, 388, 496, 638, 882, 985, 1058, 1101
BlnI CCTAGG 1 cut(s) 839
BlsI GCNGC 8 cut(s) 22, 389, 497, 639, 883, 986, 1059, 1102
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 850, 1087
Bme18I GGWCC 2 cut(s) 836, 1090
BmgT120I GGNCC 2 cut(s) 836, 1090
BmiI GGNNCC 4 cut(s) 363, 469, 837, 1091
BmrFI CCNGG 2 cut(s) 850, 1087
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 1072
BsaJI CCNNGG 5 cut(s) 14, 454, 839, 848, 1086
BsaWI WCCGGW 2 cut(s) 278, 352
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 202
Bse1I ACTGG 1 cut(s) 519
Bse21I CCTNAGG 1 cut(s) 732
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 2 cut(s) 850, 1087
BseDI CCNNGG 5 cut(s) 14, 454, 839, 848, 1086
BseGI GGATG 3 cut(s) 262, 691, 703
BseLI CCNNNNNNNGG 2 cut(s) 201, 202
BseMII CTCAG 3 cut(s) 173, 723, 933
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 3 cut(s) 300, 303, 306
BseXI GCAGC 5 cut(s) 7, 374, 649, 893, 1112
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 1009, 1057
BshNI GGYRCC 1 cut(s) 467
BsiSI CCGG 2 cut(s) 279, 353
BslFI GGGAC 2 cut(s) 41, 178
BslI CCNNNNNNNGG 2 cut(s) 201, 202
BsmFI GGGAC 2 cut(s) 41, 178
BsnI GGCC 2 cut(s) 1009, 1057
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
Bsp19I CCATGG 2 cut(s) 14, 454
BspACI CCGC 7 cut(s) 228, 257, 390, 496, 782, 985, 1058
BspANI GGCC 2 cut(s) 1009, 1057
BspCNI CTCAG 3 cut(s) 172, 724, 934
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 363, 469, 837, 1091
BspMI ACCTGC 1 cut(s) 993
BspPI GGATC 4 cut(s) 86, 267, 638, 986
BspT107I GGYRCC 1 cut(s) 467
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 5 cut(s) 14, 454, 839, 848, 1086
BssMI GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
BssT1I CCWWGG 3 cut(s) 14, 454, 839
Bst2UI CCWGG 2 cut(s) 850, 1087
Bst4CI ACNGT 4 cut(s) 119, 273, 817, 967
Bst6I CTCTTC 2 cut(s) 927, 1031
BstC8I GCNNGC 2 cut(s) 654, 1011
BstDEI CTNAG 6 cut(s) 159, 404, 607, 707, 732, 942
BstDSI CCRYGG 2 cut(s) 14, 454
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 3 cut(s) 262, 691, 703
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 8 cut(s) 49, 94, 262, 310, 646, 904, 981, 1023
BstMBI GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNI CCWGG 2 cut(s) 850, 1087
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 2 cut(s) 848, 1085
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 5 cut(s) 7, 374, 649, 893, 1112
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 2 cut(s) 643, 978
BstYI RGATCY 2 cut(s) 643, 978
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 2 cut(s) 1009, 1057
BtgI CCRYGG 2 cut(s) 14, 454
BtsCI GGATG 3 cut(s) 262, 691, 703
BtsIMutI CAGTG 2 cut(s) 278, 526
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 2 cut(s) 654, 1011
CaiI CAGNNNCTG 2 cut(s) 387, 592
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 836, 1090
CseI GACGC 1 cut(s) 604
Csp6I GTAC 2 cut(s) 251, 511
CviAII CATG 6 cut(s) 15, 35, 190, 455, 479, 1094
CviQI GTAC 2 cut(s) 251, 511
DdeI CTNAG 6 cut(s) 159, 404, 607, 707, 732, 942
DpnI GATC 8 cut(s) 48, 93, 261, 309, 645, 903, 980, 1022
DpnII GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
Eam1104I CTCTTC 2 cut(s) 927, 1031
EarI CTCTTC 2 cut(s) 927, 1031
EciI GGCGGA 2 cut(s) 243, 797
Eco130I CCWWGG 3 cut(s) 14, 454, 839
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 836, 1090
Eco57I CTGAAG 1 cut(s) 364
Eco81I CCTNAGG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 836
EcoO65I GGTNACC 1 cut(s) 811
EcoRI GAATTC 3 cut(s) 313, 722, 1066
EcoRII CCWGG 2 cut(s) 848, 1085
EcoT14I CCWWGG 3 cut(s) 14, 454, 839
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 3 cut(s) 14, 454, 839
FaeI CATG 6 cut(s) 18, 38, 193, 458, 482, 1097
FaqI GGGAC 2 cut(s) 41, 178
FatI CATG 6 cut(s) 14, 34, 189, 454, 478, 1093
FbaI TGATCA 2 cut(s) 46, 307
Fnu4HI GCNGC 8 cut(s) 21, 388, 496, 638, 882, 985, 1058, 1101
FokI GGATG 3 cut(s) 249, 698, 710
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 8 cut(s) 21, 388, 496, 638, 882, 985, 1058, 1101
FspBI CTAG 3 cut(s) 254, 840, 1014
GlaI GCGC 1 cut(s) 499
GluI GCNGC 8 cut(s) 21, 388, 496, 638, 882, 985, 1058, 1101
HaeIII GGCC 2 cut(s) 1009, 1057
HapII CCGG 2 cut(s) 279, 353
HgaI GACGC 1 cut(s) 604
HhaI GCGC 1 cut(s) 500
Hin1II CATG 6 cut(s) 18, 38, 193, 458, 482, 1097
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HindIII AAGCTT 1 cut(s) 1048
HinfI GANTC 7 cut(s) 8, 174, 296, 462, 515, 667, 737
HpaII CCGG 2 cut(s) 279, 353
HphI GGTGA 3 cut(s) 701, 823, 916
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 8 cut(s) 69, 312, 546, 594, 666, 742, 775, 943
Hpy188III TCNNGA 7 cut(s) 50, 89, 279, 488, 716, 731, 973
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 65, 119, 722, 755
HpyAV CCTTC 5 cut(s) 141, 276, 388, 617, 826
HpyCH4III ACNGT 4 cut(s) 119, 273, 817, 967
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 482, 561, 637, 652, 863, 1100
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 6 cut(s) 159, 404, 607, 707, 732, 942
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 6 cut(s) 18, 38, 193, 458, 482, 1097
HspAI GCGC 1 cut(s) 498
Kpn2I TCCGGA 1 cut(s) 278
Ksp22I TGATCA 2 cut(s) 46, 307
Kzo9I GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 5 cut(s) 7, 374, 649, 893, 1112
LweI GCATC 1 cut(s) 333
MaeI CTAG 3 cut(s) 254, 840, 1014
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 811
MalI GATC 8 cut(s) 48, 93, 261, 309, 645, 903, 980, 1022
MboI GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
MboII GAAGA 5 cut(s) 471, 797, 896, 944, 1048
MfeI CAATTG 1 cut(s) 947
MflI RGATCY 2 cut(s) 643, 978
MhlI GDGCHC 1 cut(s) 364
MlyI GAGTC 3 cut(s) 456, 661, 731
MmeI TCCRAC 1 cut(s) 119
MroI TCCGGA 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 414, 726
MseI TTAA 3 cut(s) 78, 896, 1110
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 2 cut(s) 279, 353
MspR9I CCNGG 2 cut(s) 850, 1087
MunI CAATTG 1 cut(s) 947
MvaI CCWGG 2 cut(s) 850, 1087
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 393
NcoI CCATGG 2 cut(s) 14, 454
NdeII GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
NlaIII CATG 6 cut(s) 18, 38, 193, 458, 482, 1097
NlaIV GGNNCC 4 cut(s) 363, 469, 837, 1091
NmuCI GTSAC 1 cut(s) 811
PaqCI CACCTGC 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 414, 726
PfeI GAWTC 4 cut(s) 8, 174, 296, 515
PkrI GCNGC 8 cut(s) 22, 389, 497, 639, 883, 986, 1059, 1102
PleI GAGTC 3 cut(s) 456, 661, 731
PpsI GAGTC 3 cut(s) 456, 661, 731
PpuMI RGGWCCY 1 cut(s) 836
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 848, 1085
PspEI GGTNACC 1 cut(s) 811
PspGI CCWGG 2 cut(s) 848, 1085
PspN4I GGNNCC 4 cut(s) 363, 469, 837, 1091
PspPI GGNCC 2 cut(s) 836, 1090
PspPPI RGGWCCY 1 cut(s) 836
PstNI CAGNNNCTG 2 cut(s) 387, 592
PsuI RGATCY 2 cut(s) 643, 978
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 2 cut(s) 252, 512
RsaNI GTAC 2 cut(s) 251, 511
SaqAI TTAA 3 cut(s) 78, 896, 1110
SatI GCNGC 8 cut(s) 21, 388, 496, 638, 882, 985, 1058, 1101
Sau3AI GATC 8 cut(s) 46, 91, 259, 307, 643, 901, 978, 1020
Sau96I GGNCC 2 cut(s) 836, 1090
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 3 cut(s) 456, 661, 731
ScrFI CCNGG 2 cut(s) 850, 1087
SduI GDGCHC 1 cut(s) 364
SetI ASST 9 cut(s) 66, 352, 621, 802, 813, 854, 1007, 1052, 1105
SfaNI GCATC 1 cut(s) 333
SinI GGWCC 2 cut(s) 836, 1090
SmlI CTYRAG 1 cut(s) 1051
SmoI CTYRAG 1 cut(s) 1051
SsiI CCGC 7 cut(s) 228, 257, 390, 496, 782, 985, 1058
SspMI CTAG 3 cut(s) 254, 840, 1014
StyD4I CCNGG 2 cut(s) 848, 1085
StyI CCWWGG 3 cut(s) 14, 454, 839
TaaI ACNGT 4 cut(s) 119, 273, 817, 967
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 114, 804
TatI WGTACW 1 cut(s) 250
TauI GCSGC 3 cut(s) 498, 987, 1060
TfiI GAWTC 4 cut(s) 8, 174, 296, 515
Tru1I TTAA 3 cut(s) 78, 896, 1110
Tru9I TTAA 3 cut(s) 78, 896, 1110
TscAI CASTG 2 cut(s) 278, 526
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 5 cut(s) 20, 387, 637, 881, 1100
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 6 cut(s) 64, 715, 748, 839, 905, 1059
TspRI CASTG 2 cut(s) 278, 526
VpaK11BI GGWCC 2 cut(s) 836, 1090
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 4 cut(s) 70, 313, 722, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XmaJI CCTAGG 1 cut(s) 839
XmnI GAANNNNTTC 2 cut(s) 414, 726
XspI CTAG 3 cut(s) 254, 840, 1014
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.