Rh7BG380900

RWP-RK domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006657
Physical Location & Seq
Reverse (-)
41132408 .. 41134921
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG380900.1

Sequence Viewer

Length: 1161 bp
ATGGAGGGCGTGACAGATTCTCCATGGGCTGTTGTGCCTTACCATGACCCTTATGATCATGAAGTCCCCGACGTTCTGAATTTCATTAAAGATACCCCTGATCCAACCCTTGACACATTGTTCGATGGTGGAGTAGTTCCTTCTTTCCCTCATCAATATCCAGTTCCTCAGTTTGATAATGGAATCCAAGATATTCCCATGTCCCCAATGTGGGATTTGGGCAACAGTTATAATGGTGGAGGGAATAATACTATTTCAGTACTAGCGGATCATCCTTCACAGTGTTCCGGAGGAGGAGGAGGAGGAGAATCGGGTTTTGATCAGAATTCGGGGTTAGGGTTTGGGAGTAATGTGATGCCACCTCCAGTTTGGGCTCCACCACCAATCCCCTTCAGTTGCTGCGGTTGCCAAGTTCTAAGGGAAATTGTTCACTTCAATCGCAATTATATCATGACACTTGAAATCCATGGAAGACTCGGTGCCATCTGTCATGCAATTCAAGAAAGCCGCGCCAATTACTTGTACGACTCCAGTGCTTCTATTGAGCCTCACTATCAGAACTTTGACTTTTGCAATAAAAACATTGAGGAAGTGAAGCAGTTTCTGACGCAGTACTGCTTAGAGCGAAAGGTAGAAGGCTACATTATGCAGCAAGATCCTCTGCAAGCATTTTATCAGACTCTCTGTGTTGGTATGGATGGTGAGTGGGATGATATTCTTAGTTATCCCGACGAATTCATTCCTGAGGACTTGGACACTACCGACGACTTCATTTCTCCTAATTCAGAAAGGGCGGAAGAAATGGAACAACCTGTCGATGAGATGACCGTGAATATGAAAGGGAAGGGTCCTAGGCTTCTCAGGTTTTCCCTTGCAGAACAGAGGGAGAGAGCAGCAAAAATGAAATTAAATGATCTTCGTGCTTACTTCCATCTCACCATTGAAGAGGCTTCTGAGCAATTGGGTTTTTGCCCAACTGTTGTCAAGAGGATCTGCCGCAAGTTTGGAGTAAGCCGGTGGCCTGCTAGAAAGATCAAAAGCATTGAGAGGCGAATATCAAGCTTGAGGCCGCTTTTGAATTCATATAGTGACAGCACCAGGGTCCATGTTGTAGCTGAAATTAAAAGGCTTGAAAGAGAAGTATCCCGACTTGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

386

Amino Acids

43.61

Weight (kDa)

4.9

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWP-RK PF02042 300 - 348 1e-21 RWP-RK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 479
AccII CGCG 1 cut(s) 510
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 6 cut(s) 266, 402, 508, 794, 997, 1070
AclWI GGATC 4 cut(s) 95, 276, 650, 998
AcsI RAATTY 4 cut(s) 79, 325, 734, 1078
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 3 cut(s) 261, 524, 614
AfiI CCNNNNNNNGG 2 cut(s) 210, 211
AgsI TTSAA 6 cut(s) 436, 461, 500, 944, 1078, 1133
AjnI CCWGG 1 cut(s) 1097
AluBI AGCT 2 cut(s) 1062, 1115
AluI AGCT 2 cut(s) 1062, 1115
AlwI GGATC 4 cut(s) 95, 276, 650, 998
AlwNI CAGNNNCTG 2 cut(s) 399, 604
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 2 cut(s) 1019, 1067
ApeKI GCWGC 3 cut(s) 399, 649, 893
ApoI RAATTY 4 cut(s) 79, 325, 734, 1078
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp700I GAANNNNTTC 2 cut(s) 426, 738
AspA2I CCTAGG 1 cut(s) 851
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 848, 1102
AsuHPI GGTGA 2 cut(s) 713, 928
AvaII GGWCC 2 cut(s) 848, 1102
AvrII CCTAGG 1 cut(s) 851
AxyI CCTNAGG 1 cut(s) 744
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 386, 661, 905
BccI CCATC 4 cut(s) 119, 491, 692, 939
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 1 cut(s) 1099
BciVI GTATCC 1 cut(s) 1153
BclI TGATCA 2 cut(s) 55, 319
BfaI CTAG 3 cut(s) 263, 852, 1026
BfuI GTATCC 1 cut(s) 1153
BisI GCNGC 6 cut(s) 400, 508, 650, 894, 997, 1070
BlnI CCTAGG 1 cut(s) 851
BlsI GCNGC 6 cut(s) 401, 509, 651, 895, 998, 1071
BmcAI AGTACT 2 cut(s) 261, 614
Bme1390I CCNGG 1 cut(s) 1099
Bme18I GGWCC 2 cut(s) 848, 1102
BmgT120I GGNCC 2 cut(s) 848, 1102
BmiI GGNNCC 4 cut(s) 375, 481, 849, 1103
BmrFI CCNGG 1 cut(s) 1099
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 2 cut(s) 348, 514
BpuEI CTTGAG 1 cut(s) 1084
BsaJI CCNNGG 4 cut(s) 23, 466, 851, 1098
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 211
Bse118I RCCGGY 1 cut(s) 1014
Bse1I ACTGG 3 cut(s) 161, 365, 531
Bse21I CCTNAGG 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 1 cut(s) 1099
BseDI CCNNGG 4 cut(s) 23, 466, 851, 1098
BseGI GGATG 3 cut(s) 271, 703, 715
BseLI CCNNNNNNNGG 2 cut(s) 210, 211
BseMII CTCAG 4 cut(s) 182, 735, 874, 945
BseNI ACTGG 3 cut(s) 161, 365, 531
BseRI GAGGAG 5 cut(s) 306, 309, 312, 315, 318
BseXI GCAGC 3 cut(s) 386, 661, 905
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 1021, 1069
BshNI GGYRCC 1 cut(s) 479
BsiSI CCGG 2 cut(s) 288, 1015
BslFI GGGAC 2 cut(s) 50, 187
BslI CCNNNNNNNGG 2 cut(s) 210, 211
BsmFI GGGAC 2 cut(s) 50, 187
BsnI GGCC 2 cut(s) 1021, 1069
Bsp1286I GDGCHC 1 cut(s) 376
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
Bsp19I CCATGG 2 cut(s) 23, 466
BspACI CCGC 6 cut(s) 266, 402, 508, 794, 997, 1070
BspANI GGCC 2 cut(s) 1021, 1069
BspCNI CTCAG 4 cut(s) 181, 736, 873, 946
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 2 cut(s) 58, 450
BspLI GGNNCC 4 cut(s) 375, 481, 849, 1103
BspPI GGATC 4 cut(s) 95, 276, 650, 998
BspT107I GGYRCC 1 cut(s) 479
BsrFI RCCGGY 1 cut(s) 1014
BsrI ACTGG 3 cut(s) 161, 365, 531
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 4 cut(s) 23, 466, 851, 1098
BssMI GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
BssT1I CCWWGG 3 cut(s) 23, 466, 851
Bst2UI CCWGG 1 cut(s) 1099
Bst4CI ACNGT 4 cut(s) 227, 282, 829, 979
Bst6I CTCTTC 1 cut(s) 939
BstC8I GCNNGC 2 cut(s) 666, 1023
BstDEI CTNAG 7 cut(s) 168, 416, 619, 719, 744, 860, 954
BstDSI CCRYGG 2 cut(s) 23, 466
BstF5I GGATG 3 cut(s) 271, 703, 715
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 8 cut(s) 58, 103, 271, 322, 658, 916, 993, 1035
BstMBI GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNI CCWGG 1 cut(s) 1099
BstSCI CCNGG 1 cut(s) 1097
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 386, 661, 905
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 655, 990
BstYI RGATCY 2 cut(s) 655, 990
Bsu36I CCTNAGG 1 cut(s) 744
BsuI GTATCC 1 cut(s) 1153
BsuRI GGCC 2 cut(s) 1021, 1069
BtgI CCRYGG 2 cut(s) 23, 466
BtsCI GGATG 3 cut(s) 271, 703, 715
BtsIMutI CAGTG 2 cut(s) 287, 538
Cac8I GCNNGC 2 cut(s) 666, 1023
CaiI CAGNNNCTG 2 cut(s) 399, 604
CciI TCATGA 2 cut(s) 58, 450
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 2 cut(s) 848, 1102
CseI GACGC 1 cut(s) 616
Csp6I GTAC 3 cut(s) 260, 523, 613
CviAII CATG 8 cut(s) 24, 44, 59, 199, 451, 467, 491, 1106
CviQI GTAC 3 cut(s) 260, 523, 613
DdeI CTNAG 7 cut(s) 168, 416, 619, 719, 744, 860, 954
DpnI GATC 8 cut(s) 57, 102, 270, 321, 657, 915, 992, 1034
DpnII GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
EciI GGCGGA 1 cut(s) 809
Eco130I CCWWGG 3 cut(s) 23, 466, 851
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 848, 1102
Eco57I CTGAAG 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 848
EcoRI GAATTC 3 cut(s) 325, 734, 1078
EcoRII CCWGG 1 cut(s) 1097
EcoT14I CCWWGG 3 cut(s) 23, 466, 851
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 23, 466, 851
FaeI CATG 8 cut(s) 27, 47, 62, 202, 454, 470, 494, 1109
FaqI GGGAC 2 cut(s) 50, 187
FatI CATG 8 cut(s) 23, 43, 58, 198, 450, 466, 490, 1105
FbaI TGATCA 2 cut(s) 55, 319
Fnu4HI GCNGC 6 cut(s) 400, 508, 650, 894, 997, 1070
FokI GGATG 3 cut(s) 258, 710, 722
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 6 cut(s) 400, 508, 650, 894, 997, 1070
FspBI CTAG 3 cut(s) 263, 852, 1026
GlaI GCGC 1 cut(s) 511
GluI GCNGC 6 cut(s) 400, 508, 650, 894, 997, 1070
GsuI CTGGAG 2 cut(s) 348, 514
HaeIII GGCC 2 cut(s) 1021, 1069
HapII CCGG 2 cut(s) 288, 1015
HgaI GACGC 1 cut(s) 616
HhaI GCGC 1 cut(s) 512
Hin1II CATG 8 cut(s) 27, 47, 62, 202, 454, 470, 494, 1109
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 1060
HinfI GANTC 6 cut(s) 17, 183, 308, 474, 527, 679
HpaII CCGG 2 cut(s) 288, 1015
HphI GGTGA 2 cut(s) 713, 928
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 7 cut(s) 78, 324, 558, 606, 678, 787, 955
Hpy188III TCNNGA 8 cut(s) 59, 288, 451, 500, 728, 743, 985, 1146
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 3 cut(s) 74, 734, 767
HpyAV CCTTC 5 cut(s) 150, 285, 400, 629, 838
HpyCH4III ACNGT 4 cut(s) 227, 282, 829, 979
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 494, 573, 649, 664, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 7 cut(s) 168, 416, 619, 719, 744, 860, 954
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 8 cut(s) 27, 47, 62, 202, 454, 470, 494, 1109
HspAI GCGC 1 cut(s) 510
Kpn2I TCCGGA 1 cut(s) 287
Ksp22I TGATCA 2 cut(s) 55, 319
Kzo9I GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 386, 661, 905
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 263, 852, 1026
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 10, 1088
MalI GATC 8 cut(s) 57, 102, 270, 321, 657, 915, 992, 1034
MboI GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
MboII GAAGA 4 cut(s) 483, 809, 908, 956
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 2 cut(s) 655, 990
MhlI GDGCHC 1 cut(s) 376
MlyI GAGTC 3 cut(s) 468, 521, 673
MmeI TCCRAC 1 cut(s) 128
MroI TCCGGA 1 cut(s) 287
MroXI GAANNNNTTC 2 cut(s) 426, 738
MseI TTAA 3 cut(s) 87, 908, 1122
MspI CCGG 2 cut(s) 288, 1015
MspR9I CCNGG 1 cut(s) 1099
MunI CAATTG 1 cut(s) 959
MvaI CCWGG 1 cut(s) 1099
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 405
NcoI CCATGG 2 cut(s) 23, 466
NdeII GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
NlaIII CATG 8 cut(s) 27, 47, 62, 202, 454, 470, 494, 1109
NlaIV GGNNCC 4 cut(s) 375, 481, 849, 1103
NmuCI GTSAC 2 cut(s) 10, 1088
PagI TCATGA 2 cut(s) 58, 450
PdmI GAANNNNTTC 2 cut(s) 426, 738
PfeI GAWTC 3 cut(s) 17, 183, 308
PkrI GCNGC 6 cut(s) 401, 509, 651, 895, 998, 1071
PleI GAGTC 3 cut(s) 468, 521, 673
PpsI GAGTC 3 cut(s) 468, 521, 673
PpuMI RGGWCCY 1 cut(s) 848
PsiI TTATAA 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1097
PspN4I GGNNCC 4 cut(s) 375, 481, 849, 1103
PspPI GGNCC 2 cut(s) 848, 1102
PspPPI RGGWCCY 1 cut(s) 848
PstNI CAGNNNCTG 2 cut(s) 399, 604
PsuI RGATCY 2 cut(s) 655, 990
RsaI GTAC 3 cut(s) 261, 524, 614
RsaNI GTAC 3 cut(s) 260, 523, 613
SaqAI TTAA 3 cut(s) 87, 908, 1122
SatI GCNGC 6 cut(s) 400, 508, 650, 894, 997, 1070
Sau3AI GATC 8 cut(s) 55, 100, 268, 319, 655, 913, 990, 1032
Sau96I GGNCC 2 cut(s) 848, 1102
ScaI AGTACT 2 cut(s) 261, 614
SchI GAGTC 3 cut(s) 468, 521, 673
ScrFI CCNGG 1 cut(s) 1099
SduI GDGCHC 1 cut(s) 376
SetI ASST 7 cut(s) 75, 364, 633, 814, 866, 1064, 1117
SfaNI GCATC 1 cut(s) 345
SinI GGWCC 2 cut(s) 848, 1102
SmlI CTYRAG 1 cut(s) 1063
SmoI CTYRAG 1 cut(s) 1063
SsiI CCGC 6 cut(s) 266, 402, 508, 794, 997, 1070
SspMI CTAG 3 cut(s) 263, 852, 1026
StyD4I CCNGG 1 cut(s) 1097
StyI CCWWGG 3 cut(s) 23, 466, 851
TaaI ACNGT 4 cut(s) 227, 282, 829, 979
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 123, 816
TatI WGTACW 2 cut(s) 259, 612
TauI GCSGC 3 cut(s) 510, 999, 1072
TfiI GAWTC 3 cut(s) 17, 183, 308
Tru1I TTAA 3 cut(s) 87, 908, 1122
Tru9I TTAA 3 cut(s) 87, 908, 1122
TscAI CASTG 2 cut(s) 287, 538
TseFI GTSAC 2 cut(s) 10, 1088
TseI GCWGC 3 cut(s) 399, 649, 893
Tsp45I GTSAC 2 cut(s) 10, 1088
TspDTI ATGAA 7 cut(s) 73, 75, 727, 760, 851, 917, 1071
TspRI CASTG 2 cut(s) 287, 538
VpaK11BI GGWCC 2 cut(s) 848, 1102
XapI RAATTY 4 cut(s) 79, 325, 734, 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
XmaJI CCTAGG 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 426, 738
XspI CTAG 3 cut(s) 263, 852, 1026
ZrmI AGTACT 2 cut(s) 261, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.