Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Reverse (-)

37091650 .. 37095048

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G433600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTCTTCCTCAACACCACTTTCAACAGCACTACCCACCCCAACAACAACAATCTTCTAAGTCTTTCAGAAATTTGTACACAATCGACGGTCATATGACGCCGGCGATGGCCTATTACGACCCCAGCACTTTACAAGATCACTCGCAGCATCCCCCTTATGTTCCACCCTTTCATGTAGTGGGGTTTGCACCCGGTCCAGTCGCTGCAACAGACGGCAGTGATAATGGAGCTGATTTGCAATGGCAATATGGCTTCGAATCCAAAAGGAAAAAACTCAAGGAACAGGATTTCTTGGAGAACAACTCACAGATATCGTCTGTTGAGTTACTGCAACCGAGATCAGTCTCCACGGGCTTGGGCTTGTCCCTTGACAATACTAGAATGGCTTCTACCGGGGACTCGGCATTGCTGTCACTCATCGGGGATGACGTGGATCATGAGCTACAACGACAGGATGCTGAGATTGATAGGTTCCTCAAGGATCAGGGTGACCGATTGCGGCAAAATATCCTGGAGAAGGTCCAAGCTACCCAACTTCAGACCCTCTCGGTTGTAGAAGAAAAAGTCCTTCAGAAGCTGCGAGAGAAAGAAGCAGAAGTGGAGAGCATTAACAAGAAGAATATGGAGCTTGAAGAACGAATGGAACAGTTGACTGTTGAAGCAGGTGCTTGGCAACAGCTAGCCAGGCGCAACGAAAACATGATATCATCTCTAAGGTTCAGTCTTCAGCATGTATATGCTCAAAGTAGAGATAGTAAAGAAGGATGTGGTGACAGTGAGGTAGATGATACAGCTTCTTGCTGCAATGGCCGTACCCTCAATTTTGATATGTTTTGCAAGGAGAACAATGACGTGAAAGAGATGATGAGTTGCAAGGCCTGCAGAGTCAATGAAGTGTGCATGCTTCTATTACCTTGTAAGCATCTTTGCCTATGTAAAGATTGTGAAAGTAAGCTTAGCCTTTGTCCTCTGTGTCAGTCCTCTAAGTTTATCGGCATGGAGGTATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

339

Amino Acids

38.32

Weight (kDa)

5.28

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	656
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	2 cut(s)	444, 492
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	3 cut(s)	524, 557, 713
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	80, 817
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	26, 635, 662
AjiI	CACGTC	2 cut(s)	433, 856
AjnI	CCWGG	2 cut(s)	513, 686
AluBI	AGCT	8 cut(s)	233, 445, 530, 580, 631, 682, 797, 958
AluI	AGCT	8 cut(s)	233, 445, 530, 580, 631, 682, 797, 958
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	444, 492
AlwNI	CAGNNNCTG	2 cut(s)	206, 580
AoxI	GGCC	3 cut(s)	111, 811, 879
ApeKI	GCWGC	4 cut(s)	148, 206, 580, 804
ApoI	RAATTY	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	197, 523
AsuC2I	CCSGG	2 cut(s)	195, 397
AsuHPI	GGTGA	2 cut(s)	503, 785
AsuII	TTCGAA	1 cut(s)	258
AsuNHI	GCTAGC	1 cut(s)	682
AvaII	GGWCC	2 cut(s)	197, 523
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	4 cut(s)	160, 193, 567, 791
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	232, 798
BciT130I	CCWGG	2 cut(s)	515, 688
BcnI	CCSGG	2 cut(s)	195, 397
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	381, 683
BfmI	CTRYAG	1 cut(s)	883
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	149, 207, 503, 581, 805
BlpI	GCTNAGC	1 cut(s)	959
BlsI	GCNGC	5 cut(s)	150, 208, 504, 582, 806
Bme1390I	CCNGG	4 cut(s)	195, 397, 515, 688
Bme18I	GGWCC	2 cut(s)	197, 523
BmgBI	CACGTC	2 cut(s)	433, 856
BmgT120I	GGNCC	2 cut(s)	197, 523
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	4 cut(s)	195, 397, 515, 688
BmsI	GCATC	3 cut(s)	160, 448, 934
BmtI	GCTAGC	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	536
Bpu1102I	GCTNAGC	1 cut(s)	959
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	263, 464
BpuMI	CCSGG	2 cut(s)	195, 397
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	351, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	3 cut(s)	248, 407, 814
BseBI	CCWGG	2 cut(s)	515, 688
BseDI	CCNNGG	2 cut(s)	351, 396
BseGI	GGATG	4 cut(s)	151, 433, 463, 773
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	3 cut(s)	248, 407, 814
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	160, 193, 567, 791
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	3 cut(s)	113, 813, 881
BsiSI	CCGG	3 cut(s)	104, 195, 396
BslFI	GGGAC	2 cut(s)	352, 413
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	352, 413
BsnI	GGCC	3 cut(s)	113, 813, 881
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	139, 341, 436, 484
Bsp1720I	GCTNAGC	1 cut(s)	959
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	3 cut(s)	113, 813, 881
BspCNI	CTCAG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	887
BspMI	ACCTGC	1 cut(s)	656
BspOI	GCTAGC	1 cut(s)	686
BspPI	GGATC	2 cut(s)	444, 492
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	258
BsrDI	GCAATG	3 cut(s)	248, 407, 814
BsrFI	RCCGGY	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	351, 396
BssMI	GATC	4 cut(s)	139, 341, 436, 484
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	515, 688
Bst4CI	ACNGT	4 cut(s)	92, 651, 658, 779
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	882
BstAUI	TGTACA	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	105, 684, 883, 905
BstDEI	CTNAG	5 cut(s)	60, 462, 716, 959, 987
BstDSI	CCRYGG	1 cut(s)	351
BstEII	GGTNACC	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	151, 433, 463, 773
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	4 cut(s)	142, 344, 439, 487
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	4 cut(s)	139, 341, 436, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	688, 810, 882
BstNI	CCWGG	2 cut(s)	515, 688
BstNSI	RCATGY	2 cut(s)	737, 907
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	4 cut(s)	193, 395, 513, 686
BstSFI	CTRYAG	1 cut(s)	883
BstV1I	GCAGC	4 cut(s)	160, 193, 567, 791
BstV2I	GAAGAC	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	113, 813, 881
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	122
BtrI	CACGTC	2 cut(s)	433, 856
BtsCI	GGATG	4 cut(s)	151, 433, 463, 773
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 784
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	4 cut(s)	105, 684, 883, 905
CaiI	CAGNNNCTG	2 cut(s)	206, 580
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	693
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	197, 523
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	79, 816
CviAII	CATG	6 cut(s)	176, 440, 703, 734, 904, 1000
CviQI	GTAC	2 cut(s)	79, 816
DdeI	CTNAG	5 cut(s)	60, 462, 716, 959, 987
DpnI	GATC	4 cut(s)	141, 343, 438, 486
DpnII	GATC	4 cut(s)	139, 341, 436, 484
EaeI	YGGCCR	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	881
Eco32I	GATATC	2 cut(s)	315, 708
Eco47I	GGWCC	2 cut(s)	197, 523
Eco57I	CTGAAG	3 cut(s)	524, 557, 713
Eco91I	GGTNACC	1 cut(s)	491
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	513, 686
EcoRV	GATATC	2 cut(s)	315, 708
FaeI	CATG	6 cut(s)	179, 443, 706, 737, 907, 1003
FaqI	GGGAC	2 cut(s)	352, 413
FatI	CATG	6 cut(s)	175, 439, 702, 733, 903, 999
FauNDI	CATATG	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	149, 207, 503, 581, 805
FokI	GGATG	4 cut(s)	138, 440, 470, 780
Fsp4HI	GCNGC	5 cut(s)	149, 207, 503, 581, 805
FspBI	CTAG	2 cut(s)	381, 683
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	5 cut(s)	149, 207, 503, 581, 805
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	113, 813, 881
HapII	CCGG	3 cut(s)	104, 195, 396
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	693
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	179, 443, 706, 737, 907, 1003
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	3 cut(s)	260, 401, 888
HpaII	CCGG	3 cut(s)	104, 195, 396
HphI	GGTGA	2 cut(s)	503, 785
Hpy166II	GTNNAC	2 cut(s)	81, 654
Hpy188I	TCNGA	3 cut(s)	71, 543, 576
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	81, 654
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	514, 581, 758
HpyCH4III	ACNGT	4 cut(s)	92, 651, 658, 779
HpyCH4IV	ACGT	2 cut(s)	432, 855
HpyCH4V	TGCA	9 cut(s)	191, 209, 241, 334, 807, 840, 876, 885, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	688, 810, 882
HpyF3I	CTNAG	5 cut(s)	60, 462, 716, 959, 987
HpySE526I	ACGT	2 cut(s)	432, 855
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	6 cut(s)	179, 443, 706, 737, 907, 1003
HspAI	GCGC	1 cut(s)	691
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	139, 341, 436, 484
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	230, 628
Lsp1109I	GCAGC	4 cut(s)	160, 193, 567, 791
LweI	GCATC	3 cut(s)	160, 448, 934
MaeI	CTAG	2 cut(s)	381, 683
MaeII	ACGT	2 cut(s)	432, 855
MaeIII	GTNAC	4 cut(s)	327, 414, 491, 773
MalI	GATC	4 cut(s)	141, 343, 438, 486
MboI	GATC	4 cut(s)	139, 341, 436, 484
MboII	GAAGA	5 cut(s)	48, 572, 631, 647, 719
MluCI	AATT	2 cut(s)	73, 823
MlyI	GAGTC	2 cut(s)	395, 897
MnlI	CCTC	8 cut(s)	21, 488, 557, 775, 830, 981, 994, 997
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	738
MspI	CCGG	3 cut(s)	104, 195, 396
MspR9I	CCNGG	4 cut(s)	195, 397, 515, 688
MvaI	CCWGG	2 cut(s)	515, 688
MwoI	GCNNNNNNNGC	3 cut(s)	688, 810, 882
NaeI	GCCGGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	195, 397
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	4 cut(s)	139, 341, 436, 484
NgoMIV	GCCGGC	1 cut(s)	103
NheI	GCTAGC	1 cut(s)	682
NlaIII	CATG	6 cut(s)	179, 443, 706, 737, 907, 1003
NlaIV	GGNNCC	1 cut(s)	476
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	3 cut(s)	414, 491, 773
NspI	RCATGY	2 cut(s)	737, 907
NspV	TTCGAA	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	907
PagI	TCATGA	1 cut(s)	439
PaqCI	CACCTGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	5 cut(s)	150, 208, 504, 582, 806
PleI	GAGTC	2 cut(s)	395, 896
PpsI	GAGTC	2 cut(s)	395, 896
Psp6I	CCWGG	2 cut(s)	513, 686
PspEI	GGTNACC	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	513, 686
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	2 cut(s)	197, 523
PstI	CTGCAG	1 cut(s)	887
PstNI	CAGNNNCTG	2 cut(s)	206, 580
RsaI	GTAC	2 cut(s)	80, 817
RsaNI	GTAC	2 cut(s)	79, 816
RseI	CAYNNNNRTG	1 cut(s)	738
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	5 cut(s)	149, 207, 503, 581, 805
Sau3AI	GATC	4 cut(s)	139, 341, 436, 484
Sau96I	GGNCC	2 cut(s)	197, 523
SchI	GAGTC	2 cut(s)	395, 897
ScrFI	CCNGG	4 cut(s)	195, 397, 515, 688
SfaNI	GCATC	3 cut(s)	160, 448, 934
SfcI	CTRYAG	1 cut(s)	883
SfuI	TTCGAA	1 cut(s)	258
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	2 cut(s)	197, 523
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	2 cut(s)	278, 479
SmoI	CTYRAG	2 cut(s)	278, 479
SphI	GCATGC	1 cut(s)	907
Sse9I	AATT	2 cut(s)	73, 823
SseBI	AGGCCT	1 cut(s)	881
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	381, 683
StuI	AGGCCT	1 cut(s)	881
StyD4I	CCNGG	4 cut(s)	193, 395, 513, 686
TaaI	ACNGT	4 cut(s)	92, 651, 658, 779
TaiI	ACGT	2 cut(s)	435, 858
TaqI	TCGA	2 cut(s)	87, 258
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	2 cut(s)	73, 823
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	2 cut(s)	226, 784
TseFI	GTSAC	3 cut(s)	414, 491, 773
TseI	GCWGC	4 cut(s)	148, 206, 580, 804
Tsp45I	GTSAC	3 cut(s)	414, 491, 773
TspDTI	ATGAA	2 cut(s)	164, 909
TspRI	CASTG	2 cut(s)	226, 784
VpaK11BI	GGWCC	2 cut(s)	197, 523
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	2 cut(s)	737, 907
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	381, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.