Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Reverse (-)

6466257 .. 6467916

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGTGACCGACTGCGGCAAACTATCATGGACAAGGTCCTAGCCACACAACTTCAGACCCTCTCGGCTGTGGAAGACAAAGTTCATCGGAAGCTGCGAGAGAAAGAAGCAGAAGTGGAGAGCATTAACGAGAAGAATATGGAGCTTGAAGAGCAAATGGAACAGTTGACTGTTGAAGCAGGTGCTTGGCAACAGCTAGCCAGGCGCAATGAAAACATGATCTCAACTCTAAGGTTTAATCTTCAGCATGTATATGCTCAAAGTAGAGATAGTAAAGAAGGATGCGGTGACAGTGAGGTAGATGATACAGCTTCTTGCTGCAATGGCCGATCGATCAATTTGGAAATGTGTTGCAAGGAGAACAATGACGGGAAAGAGATGATGACTTGCAAGGCCTGCCGAGTCAATGAAGTGTGCATGCTTCTATTACCTTGCAAGCATCTTTGCCTGTGTAAAGATTGTGAAACTAAGCTCAGCATCTGCCCTCTCTGTCAGTCCTCTAAGTTTATCGGCATGGAGATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

5.13

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	2 cut(s)	16, 285
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	38, 227
AgsI	TTSAA	2 cut(s)	149, 176
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	94, 145, 196, 311, 472
AluI	AGCT	5 cut(s)	94, 145, 196, 311, 472
AlwNI	CAGNNNCTG	1 cut(s)	480
AoxI	GGCC	2 cut(s)	325, 393
ApeKI	GCWGC	2 cut(s)	94, 318
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	17, 299
AsuNHI	GCTAGC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	81, 305
BcgI	CGANNNNNNTGC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	202
BfaI	CTAG	2 cut(s)	41, 197
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	17, 95, 319
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	3 cut(s)	18, 96, 320
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	272, 448, 486
BmtI	GCTAGC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	214, 328
BseBI	CCWGG	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	332
BseGI	GGATG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	214, 328
BseMII	CTCAG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	81, 305
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	327, 395
BshVI	ATCGAT	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	332
BsnI	GGCC	2 cut(s)	327, 395
Bsp143I	GATC	4 cut(s)	219, 329, 333, 519
Bsp1720I	GCTNAGC	1 cut(s)	473
BspACI	CCGC	2 cut(s)	16, 285
BspANI	GGCC	2 cut(s)	327, 395
BspCNI	CTCAG	1 cut(s)	486
BspDI	ATCGAT	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	214, 328
BssMI	GATC	4 cut(s)	219, 329, 333, 519
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	165, 172, 293
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	198, 397, 419, 437
BstDEI	CTNAG	4 cut(s)	230, 468, 473, 501
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	4 cut(s)	222, 332, 336, 522
BstMBI	GATC	4 cut(s)	219, 329, 333, 519
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 202, 324, 396
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	2 cut(s)	251, 421
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	81, 305
BstV2I	GAAGAC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	327, 395
BsuTUI	ATCGAT	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	4 cut(s)	198, 397, 419, 437
CaiI	CAGNNNCTG	1 cut(s)	480
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	332
CviAII	CATG	5 cut(s)	28, 217, 248, 418, 514
DdeI	CTNAG	4 cut(s)	230, 468, 473, 501
DpnI	GATC	4 cut(s)	221, 331, 335, 521
DpnII	GATC	4 cut(s)	219, 329, 333, 519
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	38, 227
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	200
FaeI	CATG	5 cut(s)	31, 220, 251, 421, 517
FaiI	YATR	8 cut(s)	29, 140, 218, 249, 253, 255, 419, 515
FatI	CATG	5 cut(s)	27, 216, 247, 417, 513
Fnu4HI	GCNGC	3 cut(s)	17, 95, 319
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	17, 95, 319
FspBI	CTAG	2 cut(s)	41, 197
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	3 cut(s)	17, 95, 319
HaeIII	GGCC	2 cut(s)	327, 395
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	5 cut(s)	31, 220, 251, 421, 517
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	402
HphI	GGTGA	2 cut(s)	17, 299
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	57, 90
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	165, 172, 293
HpyCH4V	TGCA	5 cut(s)	321, 354, 390, 417, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 202, 324, 396
HpyF3I	CTNAG	4 cut(s)	230, 468, 473, 501
Hsp92II	CATG	5 cut(s)	31, 220, 251, 421, 517
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	219, 329, 333, 519
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	165, 187, 214, 409, 461
Lsp1109I	GCAGC	2 cut(s)	81, 305
LweI	GCATC	3 cut(s)	272, 448, 486
MaeI	CTAG	2 cut(s)	41, 197
MaeIII	GTNAC	2 cut(s)	5, 287
MalI	GATC	4 cut(s)	221, 331, 335, 521
MboI	GATC	4 cut(s)	219, 329, 333, 519
MboII	GAAGA	4 cut(s)	86, 145, 161, 233
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	411
MnlI	CCTC	4 cut(s)	71, 289, 495, 508
MseI	TTAA	2 cut(s)	126, 237
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	4 cut(s)	151, 202, 324, 396
NdeII	GATC	4 cut(s)	219, 329, 333, 519
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	31, 220, 251, 421, 517
NmeAIII	GCCGAG	2 cut(s)	44, 425
NmuCI	GTSAC	2 cut(s)	5, 287
NspI	RCATGY	2 cut(s)	251, 421
PaeI	GCATGC	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	18, 96, 320
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	126, 237
SatI	GCNGC	3 cut(s)	17, 95, 319
Sau3AI	GATC	4 cut(s)	219, 329, 333, 519
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	202
SfaNI	GCATC	3 cut(s)	272, 448, 486
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	1 cut(s)	337
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	2 cut(s)	16, 285
SspMI	CTAG	2 cut(s)	41, 197
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	165, 172, 293
TaqI	TCGA	2 cut(s)	332, 522
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	126, 237
Tru9I	TTAA	2 cut(s)	126, 237
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	5, 287
TseI	GCWGC	2 cut(s)	94, 318
Tsp45I	GTSAC	2 cut(s)	5, 287
TspDTI	ATGAA	3 cut(s)	74, 225, 423
TspRI	CASTG	1 cut(s)	298
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	2 cut(s)	251, 421
XspI	CTAG	2 cut(s)	41, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.