Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Forward (+)

3444657 .. 3447754

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTCTTCCCCAACACCACTTTCAGCAACACTATCCACCCCAACAACAACAACAACAGCAGCAGCAATCCAAGTCATTCAGAAATTTATACACAATCGACGGTCAGATGTCGCCGGCGGTGGCCTATTTCGAACCCAACGCCTTACAAGATCACCCCCAGCATCCGCCTTATGTTCCACCCTTTCATGTAGTAGGGTTTGCGCCTGGTCCGGTGGCTGCAACAGACGGCAGTGACAATGGTGCTGATTTTCAATGGAACTATGGCTTAGAATCCAAGAGGAAAAGGCTCAAGGAGCAGGATTTTTTGGAGAACAACTCGCAAATGTCTTCGGTTCTGCAACAGCAATCAGTCTCAACGGGCTTGGGTCTGTCCCTTGACAATAATCGCATGGCGTCTACAGGGGACTCGGCTTTGCTGTCTCTCATTGGCGAGGATGTTGATCTCGAGATACAGCGGCAAGATGTTGAGATTGATAGGTTCCTCAAAGCCCAGAGTGATCGATTGCGACAAAATATCCTGGACAAGGTCCAAGCTGCCCAACTTCAAACTCTCTCAGTTGTAGAAGAAAAAGTACTCCAGAAGCTCCGGAAAAAGAAGCAGAAGTCGAGAGCATCAACAAGAAGAATATGGAGCTTGAAGAAAGAATGGATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

219

Amino Acids

25.01

Weight (kDa)

8.75

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	3 cut(s)	119, 167, 457
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	254, 548, 640
AjnI	CCWGG	2 cut(s)	205, 519
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	536, 586, 636
AluI	AGCT	3 cut(s)	536, 586, 636
Alw26I	GTCTC	2 cut(s)	358, 426
AlwI	GGATC	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	588
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	61, 64, 218, 536
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	209, 529
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	209, 529
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	73, 76, 205, 523
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	207, 521
BcoDI	GTCTC	2 cut(s)	358, 426
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	5 cut(s)	62, 65, 219, 458, 537
BlsI	GCNGC	5 cut(s)	63, 66, 220, 459, 538
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	207, 521
Bme18I	GGWCC	2 cut(s)	209, 529
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	209, 529
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	2 cut(s)	207, 521
BmsI	GCATC	2 cut(s)	172, 623
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	395
BsaWI	WCCGGW	2 cut(s)	211, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	207, 521
BseCI	ATCGAT	1 cut(s)	502
BseGI	GGATG	2 cut(s)	163, 442
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	73, 76, 205, 523
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	116, 212, 589
BslFI	GGGAC	2 cut(s)	358, 419
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	358, 426
BsmFI	GGGAC	2 cut(s)	358, 419
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	151, 442, 499, 651
BspACI	CCGC	3 cut(s)	119, 167, 457
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	569
BspDI	ATCGAT	1 cut(s)	502
BspEI	TCCGGA	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	659
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssMI	GATC	4 cut(s)	151, 442, 499, 651
BssNI	GRCGYC	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	207, 521
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	268, 556
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	163, 442
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	4 cut(s)	154, 445, 502, 654
BstMAI	GTCTC	2 cut(s)	358, 426
BstMBI	GATC	4 cut(s)	151, 442, 499, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	2 cut(s)	207, 521
BstSCI	CCNGG	2 cut(s)	205, 519
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	4 cut(s)	73, 76, 205, 523
BstV2I	GAAGAC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	163, 442
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	209, 529
ClaI	ATCGAT	1 cut(s)	502
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	2 cut(s)	188, 391
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	268, 556
DpnI	GATC	4 cut(s)	153, 444, 501, 653
DpnII	GATC	4 cut(s)	151, 442, 499, 651
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	209, 529
Eco88I	CYCGRG	1 cut(s)	446
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	205, 519
FaeI	CATG	2 cut(s)	191, 394
FaiI	YATR	6 cut(s)	91, 174, 189, 264, 392, 631
FaqI	GGGAC	2 cut(s)	358, 419
FatI	CATG	2 cut(s)	187, 390
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	62, 65, 219, 458, 537
FokI	GGATG	2 cut(s)	150, 449
Fsp4HI	GCNGC	5 cut(s)	62, 65, 219, 458, 537
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	5 cut(s)	62, 65, 219, 458, 537
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	3 cut(s)	116, 212, 589
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	191, 394
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	272, 407
HpaII	CCGG	3 cut(s)	116, 212, 589
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	83, 108
Hpy188III	TCNNGA	5 cut(s)	446, 448, 580, 589, 609
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	221, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	2 cut(s)	268, 556
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	191, 394
HspAI	GCGC	1 cut(s)	203
Kpn2I	TCCGGA	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	151, 442, 499, 651
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	295, 591, 633
Lsp1109I	GCAGC	4 cut(s)	73, 76, 205, 523
LweI	GCATC	2 cut(s)	172, 623
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	153, 444, 501, 653
MboI	GATC	4 cut(s)	151, 442, 499, 651
MboII	GAAGA	4 cut(s)	321, 578, 636, 652
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	273, 427, 494
MreI	CGCCGGCG	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	588
MroNI	GCCGGC	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	3 cut(s)	116, 212, 589
MspR9I	CCNGG	2 cut(s)	207, 521
MvaI	CCWGG	2 cut(s)	207, 521
MwoI	GCNNNNNNNGC	1 cut(s)	295
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	4 cut(s)	151, 442, 499, 651
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	191, 394
NlaIV	GGNNCC	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	527
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	5 cut(s)	63, 66, 220, 459, 538
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	205, 519
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	205, 519
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	209, 529
PsyI	GACNNNGTC	1 cut(s)	527
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	5 cut(s)	62, 65, 219, 458, 537
Sau3AI	GATC	4 cut(s)	151, 442, 499, 651
Sau96I	GGNCC	2 cut(s)	209, 529
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	207, 521
SetI	ASST	5 cut(s)	482, 531, 538, 588, 638
SfaNI	GCATC	2 cut(s)	172, 623
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	209, 529
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	290, 446
SmoI	CTYRAG	2 cut(s)	290, 446
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	119, 167, 457
StyD4I	CCNGG	2 cut(s)	205, 519
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	5 cut(s)	99, 132, 447, 502, 608
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	4 cut(s)	61, 64, 218, 536
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	209, 529
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.