Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8496591.1

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2692

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8496591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 751 bp

ctgtttccagttcatgtagtagggtttgcgcctggtccggtggctgcaacagatggcagtgacaatggtgctgattttcaatggaactatggcttagaatccaagaagaaaaggctcaaggagcaggattttttggagaacaactcgcaaatgtcttcggttctgcaacagcaatcagtctcaacgggcttgggtctgtcccttgacaataatcgcatggcgtctacaggggactcggctttgctgtctctcattggcgaggatgttgatctcgagatacagcggcaagatgttgagattgataggttcctcaaagcccagagtgatcgattgcgacaaaatatcctggacaaggtccaagctgcccaacttcaaactctctcagttgtagaagaaaaagtactccagaagctccgggaaaaagaagcagaagtcgagagcatcaacaagaagaatatggagcttgaagaaagaatggatcagttgagtcttgaagcaaggatttggcaacatcaagccaggaacaatgaacacatgatcacaactctcaagcttaatcttgatcaagtaattgctcaaagtagagacagcaaggaaggatgtggtgacagtgaaatagatgatacagcttcctgctgcaatggccattccatcaattttaatatgtttggcaaggagagcaatgatgtgaaagaggtaatgacgtgcaaggcctgcagagtgaatgaagtttgcatgcttctattaccct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

250

Amino Acids

28.05

Weight (kDa)

4.83

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	80, 374, 467, 494
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	3 cut(s)	31, 345, 518
AluBI	AGCT	5 cut(s)	362, 412, 463, 553, 629
AluI	AGCT	5 cut(s)	362, 412, 463, 553, 629
Alw26I	GTCTC	3 cut(s)	184, 252, 579
AlwI	GGATC	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	643, 711
ApeKI	GCWGC	3 cut(s)	44, 362, 636
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	35, 355
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	35, 355
BalI	TGGCCA	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	31, 349, 623
BccI	CCATC	2 cut(s)	47, 659
BciT130I	CCWGG	3 cut(s)	33, 347, 520
BclI	TGATCA	2 cut(s)	537, 562
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	3 cut(s)	184, 252, 579
BfmI	CTRYAG	2 cut(s)	225, 715
BisI	GCNGC	4 cut(s)	45, 284, 363, 637
BlsI	GCNGC	4 cut(s)	46, 285, 364, 638
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	4 cut(s)	33, 347, 416, 520
Bme18I	GGWCC	2 cut(s)	35, 355
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	35, 355
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	4 cut(s)	33, 347, 416, 520
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	101, 533
BpuMI	CCSGG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	646, 688
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	33, 347, 520
BseCI	ATCGAT	1 cut(s)	328
BseGI	GGATG	2 cut(s)	268, 605
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	646, 688
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	31, 349, 623
BshFI	GGCC	2 cut(s)	645, 713
BshVI	ATCGAT	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	38, 415
BslFI	GGGAC	2 cut(s)	184, 245
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	184, 252, 579
BsmFI	GGGAC	2 cut(s)	184, 245
BsnI	GGCC	2 cut(s)	645, 713
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	5 cut(s)	268, 325, 478, 537, 562
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	2 cut(s)	645, 713
BspCNI	CTCAG	1 cut(s)	395
BspDI	ATCGAT	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	719
BspPI	GGATC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	646, 688
BsrI	ACTGG	1 cut(s)	8
BssMI	GATC	5 cut(s)	268, 325, 478, 537, 562
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	33, 347, 520
Bst4CI	ACNGT	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	715, 737
BstDEI	CTNAG	2 cut(s)	94, 382
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	268, 605
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	5 cut(s)	271, 328, 481, 540, 565
BstMAI	GTCTC	3 cut(s)	184, 252, 579
BstMBI	GATC	5 cut(s)	268, 325, 478, 537, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 642, 678, 714
BstNI	CCWGG	3 cut(s)	33, 347, 520
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	4 cut(s)	31, 345, 414, 518
BstSFI	CTRYAG	2 cut(s)	225, 715
BstV1I	GCAGC	3 cut(s)	31, 349, 623
BstV2I	GAAGAC	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	645, 713
BsuTUI	ATCGAT	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	268, 605
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 616
Cac8I	GCNNGC	2 cut(s)	715, 737
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	35, 355
ClaI	ATCGAT	1 cut(s)	328
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	4 cut(s)	14, 217, 535, 736
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	2 cut(s)	94, 382
DpnI	GATC	5 cut(s)	270, 327, 480, 539, 564
DpnII	GATC	5 cut(s)	268, 325, 478, 537, 562
EaeI	YGGCCR	1 cut(s)	643
Eco147I	AGGCCT	1 cut(s)	713
Eco47I	GGWCC	2 cut(s)	35, 355
Eco88I	CYCGRG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	31, 345, 518
FaeI	CATG	4 cut(s)	17, 220, 538, 739
FaiI	YATR	7 cut(s)	15, 90, 218, 458, 536, 665, 737
FaqI	GGGAC	2 cut(s)	184, 245
FatI	CATG	4 cut(s)	13, 216, 534, 735
FbaI	TGATCA	2 cut(s)	537, 562
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	45, 284, 363, 637
FokI	GGATG	2 cut(s)	275, 612
Fsp4HI	GCNGC	4 cut(s)	45, 284, 363, 637
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	45, 284, 363, 637
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	645, 713
HapII	CCGG	2 cut(s)	38, 415
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	17, 220, 538, 739
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	98, 233, 487
HpaII	CCGG	2 cut(s)	38, 415
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	6 cut(s)	272, 274, 406, 436, 491, 560
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	6 cut(s)	47, 166, 639, 708, 717, 735
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 642, 678, 714
HpyF3I	CTNAG	2 cut(s)	94, 382
HpySE526I	ACGT	1 cut(s)	704
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	17, 220, 538, 739
HspAI	GCGC	1 cut(s)	29
Ksp22I	TGATCA	2 cut(s)	537, 562
Kzo9I	GATC	5 cut(s)	268, 325, 478, 537, 562
LmnI	GCTCC	3 cut(s)	121, 417, 460
Lsp1109I	GCAGC	3 cut(s)	31, 349, 623
LweI	GCATC	1 cut(s)	450
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	2 cut(s)	59, 605
MalI	GATC	5 cut(s)	270, 327, 480, 539, 564
MboI	GATC	5 cut(s)	268, 325, 478, 537, 562
MboII	GAAGA	5 cut(s)	118, 147, 404, 463, 479
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	2 cut(s)	570, 655
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	227, 496
MnlI	CCTC	3 cut(s)	253, 320, 688
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	2 cut(s)	555, 660
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	2 cut(s)	38, 415
MspR9I	CCNGG	4 cut(s)	33, 347, 416, 520
MvaI	CCWGG	3 cut(s)	33, 347, 520
MwoI	GCNNNNNNNGC	4 cut(s)	121, 642, 678, 714
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	5 cut(s)	268, 325, 478, 537, 562
NlaIII	CATG	4 cut(s)	17, 220, 538, 739
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	59, 605
NspI	RCATGY	1 cut(s)	739
PaeI	GCATGC	1 cut(s)	739
PaeR7I	CTCGAG	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	353
PfoI	TCCNGGA	2 cut(s)	345, 414
PkrI	GCNGC	4 cut(s)	46, 285, 364, 638
PleI	GAGTC	2 cut(s)	227, 495
PpsI	GAGTC	2 cut(s)	227, 495
Psp6I	CCWGG	3 cut(s)	31, 345, 518
PspGI	CCWGG	3 cut(s)	31, 345, 518
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	2 cut(s)	35, 355
PstI	CTGCAG	1 cut(s)	719
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	555, 660
SatI	GCNGC	4 cut(s)	45, 284, 363, 637
Sau3AI	GATC	5 cut(s)	268, 325, 478, 537, 562
Sau96I	GGNCC	2 cut(s)	35, 355
ScaI	AGTACT	1 cut(s)	402
SchI	GAGTC	2 cut(s)	227, 496
ScrFI	CCNGG	4 cut(s)	33, 347, 416, 520
SetI	ASST	9 cut(s)	308, 357, 364, 414, 465, 555, 631, 699, 707
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	225, 715
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	35, 355
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	3 cut(s)	116, 272, 548
SmoI	CTYRAG	3 cut(s)	116, 272, 548
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	2 cut(s)	570, 655
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	31, 345, 414, 518
TaaI	ACNGT	1 cut(s)	611
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	3 cut(s)	273, 328, 435
TasI	AATT	2 cut(s)	570, 655
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	555, 660
Tru9I	TTAA	2 cut(s)	555, 660
TscAI	CASTG	2 cut(s)	64, 616
TseFI	GTSAC	2 cut(s)	59, 605
TseI	GCWGC	3 cut(s)	44, 362, 636
Tsp45I	GTSAC	2 cut(s)	59, 605
TspDTI	ATGAA	2 cut(s)	543, 741
TspRI	CASTG	2 cut(s)	64, 616
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	35, 355
XagI	CCTNNNNNAGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.