Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005706.1

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Reverse (-)

48562 .. 51416

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005706.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggctcttccccaacaccactttcaacaacactatccaccccaacaacaacagcagcagcagcagcagcagcaatccaagtcattcagaaatttatacacaatcgacggtcagatatcgccggcggtggcctatttcgaccccaacgccttacaagatcactcccagcatccgccttatgttccaccctttcatgtagtagggtttgcgcctggtccggtggctgcaacagatggcagtgacaatggtgctgattttcaatggaactatggcttagaatccaagaagaaaaggctcaaggagcaggattttttggagaacaactcgcaaatgtcttcggttctgcaacagcaatcagtctcaacgggcttgggtctgtcccttgacaataatcgcatggcgtctacaggggactcggctttgctgtctctcattggcgaggatgttgatctcgagatacagcggcaagatgttgagattgataggttcctcaaagcccagagtgatcgattgcgacaaaatatcctggacaaggtccaagctgcccaacttcaaactctctcagttgtagaagaaaaagtactccagaagctccgggaaaaagaagcagaagtcgagagcatcaacaagaagaatatggagcttgaagaaagaatggatcagttgagtcttgaagcaaggatttggcaacatcaagccaggaacaatgaacacatgatcacaactctcaagcttaatcttgatcaagtaattgctcaaagtagagacagcaaggaaggatgtggtgacagtgaaatagatgatacagcttcctgctgcaatggccattccatcaattttaatatgtttggcaaggagagcaatgatgtgaaagaggtaatgacgtgcaaggcctgcagagtgaatgaagtttgcatgcttctattaccctgtaagcatctttgcctgtgtaaagattgcgaatgtaagcttagcatttgtcctctgtgtcagtcctctaagtttatcggcatggaagtatactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

342

Amino Acids

38.78

Weight (kDa)

5.26

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	404, 1020
AciI	CCGC	3 cut(s)	125, 173, 463
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	823
AcsI	RAATTY	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	532
AgsI	TTSAA	5 cut(s)	26, 260, 554, 647, 674
AjiI	CACGTC	1 cut(s)	885
AjnI	CCWGG	3 cut(s)	211, 525, 698
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	6 cut(s)	542, 592, 643, 733, 809, 970
AluI	AGCT	6 cut(s)	542, 592, 643, 733, 809, 970
Alw26I	GTCTC	3 cut(s)	364, 432, 759
AlwI	GGATC	1 cut(s)	666
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	3 cut(s)	129, 823, 891
ApeKI	GCWGC	9 cut(s)	55, 58, 61, 64, 67, 70, 224, 542, 816
ApoI	RAATTY	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	215, 535
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	215, 535
BalI	TGGCCA	1 cut(s)	825
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	9 cut(s)	67, 70, 73, 76, 79, 82, 211, 529, 803
BccI	CCATC	2 cut(s)	227, 839
BciT130I	CCWGG	3 cut(s)	213, 527, 700
BclI	TGATCA	2 cut(s)	717, 742
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	364, 432, 759
BfmI	CTRYAG	2 cut(s)	405, 895
BlpI	GCTNAGC	1 cut(s)	971
BmcAI	AGTACT	1 cut(s)	582
Bme1390I	CCNGG	4 cut(s)	213, 527, 596, 700
Bme18I	GGWCC	2 cut(s)	215, 535
BmeT110I	CYCGRG	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	885
BmgT120I	GGNCC	2 cut(s)	215, 535
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	4 cut(s)	213, 527, 596, 700
BmsI	GCATC	3 cut(s)	178, 630, 946
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	2 cut(s)	281, 713
BpuMI	CCSGG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	1 cut(s)	121
Bse3DI	GCAATG	2 cut(s)	826, 868
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	213, 527, 700
BseCI	ATCGAT	1 cut(s)	508
BseGI	GGATG	3 cut(s)	169, 448, 785
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMI	GCAATG	2 cut(s)	826, 868
BseMII	CTCAG	1 cut(s)	576
BseXI	GCAGC	9 cut(s)	67, 70, 73, 76, 79, 82, 211, 529, 803
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	3 cut(s)	131, 825, 893
BshVI	ATCGAT	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	122, 218, 595
BslFI	GGGAC	2 cut(s)	364, 425
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	3 cut(s)	364, 432, 759
BsmFI	GGGAC	2 cut(s)	364, 425
BsnI	GGCC	3 cut(s)	131, 825, 893
BsoBI	CYCGRG	1 cut(s)	452
Bsp143I	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
Bsp1720I	GCTNAGC	1 cut(s)	971
BspACI	CCGC	3 cut(s)	125, 173, 463
BspANI	GGCC	3 cut(s)	131, 825, 893
BspCNI	CTCAG	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	899
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	826, 868
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
BssNAI	GTATAC	1 cut(s)	1021
BssNI	GRCGYC	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	1021
Bst2UI	CCWGG	3 cut(s)	213, 527, 700
Bst4CI	ACNGT	2 cut(s)	110, 791
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	894
BstC8I	GCNNGC	3 cut(s)	123, 895, 917
BstDEI	CTNAG	4 cut(s)	274, 562, 971, 999
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	169, 448, 785
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	6 cut(s)	160, 451, 508, 661, 720, 745
BstMAI	GTCTC	3 cut(s)	364, 432, 759
BstMBI	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
BstMWI	GCNNNNNNNGC	8 cut(s)	61, 64, 67, 70, 301, 822, 858, 894
BstNI	CCWGG	3 cut(s)	213, 527, 700
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	4 cut(s)	211, 525, 594, 698
BstSFI	CTRYAG	2 cut(s)	405, 895
BstV1I	GCAGC	9 cut(s)	67, 70, 73, 76, 79, 82, 211, 529, 803
BstV2I	GAAGAC	1 cut(s)	327
BstZ17I	GTATAC	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	131, 825, 893
BsuTUI	ATCGAT	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	885
BtsCI	GGATG	3 cut(s)	169, 448, 785
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	244, 796
Cac8I	GCNNGC	3 cut(s)	123, 895, 917
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	215, 535
ClaI	ATCGAT	1 cut(s)	508
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	5 cut(s)	194, 397, 715, 916, 1012
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	4 cut(s)	274, 562, 971, 999
DpnI	GATC	6 cut(s)	159, 450, 507, 660, 719, 744
DpnII	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
EaeI	YGGCCR	1 cut(s)	823
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	215, 535
Eco88I	CYCGRG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoRII	CCWGG	3 cut(s)	211, 525, 698
EcoRV	GATATC	1 cut(s)	117
FaeI	CATG	5 cut(s)	197, 400, 718, 919, 1015
FaqI	GGGAC	2 cut(s)	364, 425
FatI	CATG	5 cut(s)	193, 396, 714, 915, 1011
FbaI	TGATCA	2 cut(s)	717, 742
FblI	GTMKAC	2 cut(s)	404, 1020
FokI	GGATG	3 cut(s)	156, 455, 792
GlaI	GCGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	131, 825, 893
HapII	CCGG	3 cut(s)	122, 218, 595
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	5 cut(s)	197, 400, 718, 919, 1015
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	2 cut(s)	731, 968
HinfI	GANTC	3 cut(s)	278, 413, 667
HpaII	CCGG	3 cut(s)	122, 218, 595
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	2 cut(s)	405, 1021
Hpy188I	TCNGA	2 cut(s)	89, 114
Hpy188III	TCNNGA	6 cut(s)	452, 454, 586, 616, 671, 740
Hpy8I	GTNNAC	2 cut(s)	405, 1021
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	770
HpyCH4III	ACNGT	2 cut(s)	110, 791
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	6 cut(s)	227, 346, 819, 888, 897, 915
HpyF10VI	GCNNNNNNNGC	8 cut(s)	61, 64, 67, 70, 301, 822, 858, 894
HpyF3I	CTNAG	4 cut(s)	274, 562, 971, 999
HpySE526I	ACGT	1 cut(s)	884
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	5 cut(s)	197, 400, 718, 919, 1015
HspAI	GCGC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	2 cut(s)	717, 742
Kzo9I	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	301, 597, 640
Lsp1109I	GCAGC	9 cut(s)	67, 70, 73, 76, 79, 82, 211, 529, 803
LweI	GCATC	3 cut(s)	178, 630, 946
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	2 cut(s)	239, 785
MalI	GATC	6 cut(s)	159, 450, 507, 660, 719, 744
MboI	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
MboII	GAAGA	5 cut(s)	298, 327, 584, 643, 659
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	3 cut(s)	91, 750, 835
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	2 cut(s)	407, 676
MnlI	CCTC	5 cut(s)	433, 500, 868, 993, 1006
Mox20I	TGGCCA	1 cut(s)	825
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	3 cut(s)	735, 840, 1027
Msp20I	TGGCCA	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	3 cut(s)	122, 218, 595
MspR9I	CCNGG	4 cut(s)	213, 527, 596, 700
MvaI	CCWGG	3 cut(s)	213, 527, 700
MwoI	GCNNNNNNNGC	8 cut(s)	61, 64, 67, 70, 301, 822, 858, 894
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	197, 400, 718, 919, 1015
NlaIV	GGNNCC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	2 cut(s)	239, 785
NspI	RCATGY	1 cut(s)	919
PaeI	GCATGC	1 cut(s)	919
PaeR7I	CTCGAG	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	893
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	533
PfoI	TCCNGGA	2 cut(s)	525, 594
PleI	GAGTC	2 cut(s)	407, 675
PpsI	GAGTC	2 cut(s)	407, 675
Psp6I	CCWGG	3 cut(s)	211, 525, 698
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	3 cut(s)	211, 525, 698
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	215, 535
PstI	CTGCAG	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	735, 840, 1027
Sau3AI	GATC	6 cut(s)	157, 448, 505, 658, 717, 742
Sau96I	GGNCC	2 cut(s)	215, 535
ScaI	AGTACT	1 cut(s)	582
SchI	GAGTC	2 cut(s)	407, 676
ScrFI	CCNGG	4 cut(s)	213, 527, 596, 700
SfaNI	GCATC	3 cut(s)	178, 630, 946
SfcI	CTRYAG	2 cut(s)	405, 895
Sfr274I	CTCGAG	1 cut(s)	452
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	215, 535
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	3 cut(s)	296, 452, 728
SmoI	CTYRAG	3 cut(s)	296, 452, 728
SphI	GCATGC	1 cut(s)	919
Sse9I	AATT	3 cut(s)	91, 750, 835
SseBI	AGGCCT	1 cut(s)	893
SsiI	CCGC	3 cut(s)	125, 173, 463
StuI	AGGCCT	1 cut(s)	893
StyD4I	CCNGG	4 cut(s)	211, 525, 594, 698
TaaI	ACNGT	2 cut(s)	110, 791
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	5 cut(s)	105, 138, 453, 508, 615
TasI	AATT	3 cut(s)	91, 750, 835
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	735, 840, 1027
Tru9I	TTAA	3 cut(s)	735, 840, 1027
TscAI	CASTG	2 cut(s)	244, 796
TseFI	GTSAC	2 cut(s)	239, 785
TseI	GCWGC	9 cut(s)	55, 58, 61, 64, 67, 70, 224, 542, 816
Tsp45I	GTSAC	2 cut(s)	239, 785
TspDTI	ATGAA	3 cut(s)	182, 723, 921
TspRI	CASTG	2 cut(s)	244, 796
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	215, 535
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	919
XhoI	CTCGAG	1 cut(s)	452
XmiI	GTMKAC	2 cut(s)	404, 1020
ZrmI	AGTACT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.