Rh6DG475600

BOI-related E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010150
Physical Location & Seq
Reverse (-)
64130458 .. 64133037
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG475600.1

Sequence Viewer

Length: 918 bp
ATGTCGCCGGCGGTGGCCTATTTCGACTCCAACGCCTTACAAGATCACTCCCAGCATCCGCCTTATGTTCCACCCTTTCATGTAGTAGGGTTTGCGCCTGGTCCCGTGGCTGCAACAGACGGCAGCGACAATGGTGCTGATTTTCAATGGAACTATGGCTTAGAATCCAAGAGGAAAAGGCTCAAGGAGCAGGATTTTTTGGAGAACAACTCGCAAATGTCTTCGGTTCTGCAACAGCAGCAATCAGTCTCAACGGGCTTGGGTCTGTCCCTTGACAATAATCGCATGGCGTCTACAGGGGACTCGGCTTTGCTGTCTCTCATTGGCGAGGATGTTGATCTCGAGATACAGCGGCAAGATGTTGAGATTGATAGGTTCCTCAAAGCCCAGAGTGATCGATTGCGACAAAATATCCTGGACAAGGTCCAAGCTGCCCAACTTCAAACTCTCTCAGTTGTAGAAGAAAAAGTACTCCAGAAGCTCCGGGAAAAAGAAGCAGAAGTCGAGAGCATCAACAAGAAGAATATGGAGCTTGAAGAAAGAATGGATCAGTTGAGTCTTGAAGCAAGGATTTGGCAACATCAAGCCAGGAACAATGAACACATGATCACAACCCTCAAGGTTAATCTTGATCAAGTAATTGCTCAAAGTAGAGACAGCAAGGAAGGATGTGGTGACAGTGAAATAGATGATACAGCTTCCTGCTGCAATGGCCATTCCATCAATTTTAATATGTTTGGCAAGGAGAGCAATGATGTGAAAGAGGTAATGACGTGCAAGGCCTGCAGAGTGAATGAAGTTTGCATGCTTCTATTACCCTGTAAGCATCTTTGCCTGTGTAAAGATTGCGAATGTAAGCTTAGCATTTGTCCTCTGTGTCAGTCCTCTAAGTTTATCGGCATGGAAGTATACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

305

Amino Acids

34.3

Weight (kDa)

4.99

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 257 - 295 7.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 293, 909
AciI CCGC 3 cut(s) 11, 59, 352
AclWI GGATC 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 712
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 4 cut(s) 146, 443, 536, 563
AjiI CACGTC 1 cut(s) 774
AjnI CCWGG 3 cut(s) 97, 414, 587
AluBI AGCT 5 cut(s) 431, 481, 532, 698, 859
AluI AGCT 5 cut(s) 431, 481, 532, 698, 859
Alw26I GTCTC 3 cut(s) 253, 321, 648
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 3 cut(s) 15, 712, 780
ApeKI GCWGC 5 cut(s) 110, 123, 238, 431, 705
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 101, 424
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 101, 424
BalI TGGCCA 1 cut(s) 714
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 5 cut(s) 97, 135, 250, 418, 692
BccI CCATC 1 cut(s) 728
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 3 cut(s) 99, 416, 589
BclI TGATCA 2 cut(s) 606, 631
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 3 cut(s) 253, 321, 648
BfmI CTRYAG 2 cut(s) 294, 784
BisI GCNGC 6 cut(s) 111, 124, 239, 353, 432, 706
BlpI GCTNAGC 1 cut(s) 860
BlsI GCNGC 6 cut(s) 112, 125, 240, 354, 433, 707
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 4 cut(s) 99, 416, 485, 589
Bme18I GGWCC 2 cut(s) 101, 424
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 774
BmgT120I GGNCC 2 cut(s) 101, 424
BmiI GGNNCC 2 cut(s) 103, 377
BmrFI CCNGG 4 cut(s) 99, 416, 485, 589
BmsI GCATC 3 cut(s) 64, 519, 835
BpiI GAAGAC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 860
BpuEI CTTGAG 2 cut(s) 167, 602
BpuMI CCSGG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 7
Bse3DI GCAATG 2 cut(s) 715, 757
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 3 cut(s) 99, 416, 589
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 3 cut(s) 55, 337, 674
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 2 cut(s) 715, 757
BseMII CTCAG 1 cut(s) 465
BseXI GCAGC 5 cut(s) 97, 135, 250, 418, 692
BseYI CCCAGC 1 cut(s) 51
BshFI GGCC 3 cut(s) 17, 714, 782
BshVI ATCGAT 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 8, 484
BslFI GGGAC 3 cut(s) 87, 253, 314
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 253, 321, 648
BsmFI GGGAC 3 cut(s) 87, 253, 314
BsnI GGCC 3 cut(s) 17, 714, 782
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 6 cut(s) 43, 337, 394, 547, 606, 631
Bsp1720I GCTNAGC 1 cut(s) 860
BspACI CCGC 3 cut(s) 11, 59, 352
BspANI GGCC 3 cut(s) 17, 714, 782
BspCNI CTCAG 1 cut(s) 464
BspDI ATCGAT 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 103, 377
BspMAI CTGCAG 1 cut(s) 788
BspPI GGATC 1 cut(s) 555
BsrDI GCAATG 2 cut(s) 715, 757
BsrFI RCCGGY 1 cut(s) 7
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 6 cut(s) 43, 337, 394, 547, 606, 631
BssNAI GTATAC 1 cut(s) 910
BssNI GRCGYC 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 910
Bst2UI CCWGG 3 cut(s) 99, 416, 589
Bst4CI ACNGT 1 cut(s) 680
BstACI GRCGYC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 783
BstC8I GCNNGC 3 cut(s) 9, 784, 806
BstDEI CTNAG 4 cut(s) 160, 451, 860, 888
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 3 cut(s) 55, 337, 674
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 6 cut(s) 46, 340, 397, 550, 609, 634
BstMAI GTCTC 3 cut(s) 253, 321, 648
BstMBI GATC 6 cut(s) 43, 337, 394, 547, 606, 631
BstMWI GCNNNNNNNGC 5 cut(s) 187, 238, 711, 747, 783
BstNI CCWGG 3 cut(s) 99, 416, 589
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 4 cut(s) 97, 414, 483, 587
BstSFI CTRYAG 2 cut(s) 294, 784
BstV1I GCAGC 5 cut(s) 97, 135, 250, 418, 692
BstV2I GAAGAC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 910
Bsu15I ATCGAT 1 cut(s) 397
BsuRI GGCC 3 cut(s) 17, 714, 782
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 774
BtsCI GGATG 3 cut(s) 55, 337, 674
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 3 cut(s) 9, 784, 806
CfoI GCGC 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 101, 424
ClaI ATCGAT 1 cut(s) 397
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 470
CviAII CATG 5 cut(s) 80, 286, 604, 805, 901
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 4 cut(s) 160, 451, 860, 888
DpnI GATC 6 cut(s) 45, 339, 396, 549, 608, 633
DpnII GATC 6 cut(s) 43, 337, 394, 547, 606, 631
EaeI YGGCCR 1 cut(s) 712
EciI GGCGGA 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 101, 424
Eco88I CYCGRG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRII CCWGG 3 cut(s) 97, 414, 587
FaeI CATG 5 cut(s) 83, 289, 607, 808, 904
FaqI GGGAC 3 cut(s) 87, 253, 314
FatI CATG 5 cut(s) 79, 285, 603, 804, 900
FbaI TGATCA 2 cut(s) 606, 631
FblI GTMKAC 2 cut(s) 293, 909
Fnu4HI GCNGC 6 cut(s) 111, 124, 239, 353, 432, 706
FokI GGATG 3 cut(s) 42, 344, 681
Fsp4HI GCNGC 6 cut(s) 111, 124, 239, 353, 432, 706
GlaI GCGC 1 cut(s) 96
GluI GCNGC 6 cut(s) 111, 124, 239, 353, 432, 706
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 3 cut(s) 17, 714, 782
HapII CCGG 2 cut(s) 8, 484
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 5 cut(s) 83, 289, 607, 808, 904
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 4 cut(s) 26, 164, 302, 556
HpaII CCGG 2 cut(s) 8, 484
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 2 cut(s) 294, 910
Hpy188III TCNNGA 6 cut(s) 341, 343, 475, 505, 560, 629
Hpy8I GTNNAC 2 cut(s) 294, 910
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 1 cut(s) 680
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 6 cut(s) 113, 232, 708, 777, 786, 804
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 238, 711, 747, 783
HpyF3I CTNAG 4 cut(s) 160, 451, 860, 888
HpySE526I ACGT 1 cut(s) 773
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 5 cut(s) 83, 289, 607, 808, 904
HspAI GCGC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Ksp22I TGATCA 2 cut(s) 606, 631
Kzo9I GATC 6 cut(s) 43, 337, 394, 547, 606, 631
LmnI GCTCC 3 cut(s) 187, 486, 529
Lsp1109I GCAGC 5 cut(s) 97, 135, 250, 418, 692
LweI GCATC 3 cut(s) 64, 519, 835
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 1 cut(s) 674
MalI GATC 6 cut(s) 45, 339, 396, 549, 608, 633
MboI GATC 6 cut(s) 43, 337, 394, 547, 606, 631
MboII GAAGA 4 cut(s) 213, 473, 532, 548
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 2 cut(s) 639, 724
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 3 cut(s) 20, 296, 565
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 7 cut(s) 165, 322, 389, 626, 757, 882, 895
Mox20I TGGCCA 1 cut(s) 714
MreI CGCCGGCG 1 cut(s) 7
MroNI GCCGGC 1 cut(s) 7
MscI TGGCCA 1 cut(s) 714
MseI TTAA 3 cut(s) 624, 729, 916
Msp20I TGGCCA 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 2 cut(s) 8, 484
MspR9I CCNGG 4 cut(s) 99, 416, 485, 589
MvaI CCWGG 3 cut(s) 99, 416, 589
MwoI GCNNNNNNNGC 5 cut(s) 187, 238, 711, 747, 783
NaeI GCCGGC 1 cut(s) 9
NciI CCSGG 1 cut(s) 485
NdeII GATC 6 cut(s) 43, 337, 394, 547, 606, 631
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 5 cut(s) 83, 289, 607, 808, 904
NlaIV GGNNCC 2 cut(s) 103, 377
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 674
NspI RCATGY 1 cut(s) 808
PaeI GCATGC 1 cut(s) 808
PaeR7I CTCGAG 1 cut(s) 341
PceI AGGCCT 1 cut(s) 782
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 422
PfoI TCCNGGA 2 cut(s) 414, 483
PkrI GCNGC 6 cut(s) 112, 125, 240, 354, 433, 707
PleI GAGTC 3 cut(s) 20, 296, 564
PpsI GAGTC 3 cut(s) 20, 296, 564
Psp6I CCWGG 3 cut(s) 97, 414, 587
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 3 cut(s) 97, 414, 587
PspN4I GGNNCC 2 cut(s) 103, 377
PspPI GGNCC 2 cut(s) 101, 424
PstI CTGCAG 1 cut(s) 788
PsyI GACNNNGTC 1 cut(s) 422
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SaqAI TTAA 3 cut(s) 624, 729, 916
SatI GCNGC 6 cut(s) 111, 124, 239, 353, 432, 706
Sau3AI GATC 6 cut(s) 43, 337, 394, 547, 606, 631
Sau96I GGNCC 2 cut(s) 101, 424
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 3 cut(s) 20, 296, 565
ScrFI CCNGG 4 cut(s) 99, 416, 485, 589
SfaNI GCATC 3 cut(s) 64, 519, 835
SfcI CTRYAG 2 cut(s) 294, 784
Sfr274I CTCGAG 1 cut(s) 341
SgrAI CRCCGGYG 1 cut(s) 7
SinI GGWCC 2 cut(s) 101, 424
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 3 cut(s) 182, 341, 617
SmoI CTYRAG 3 cut(s) 182, 341, 617
SphI GCATGC 1 cut(s) 808
Sse9I AATT 2 cut(s) 639, 724
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 3 cut(s) 11, 59, 352
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 4 cut(s) 97, 414, 483, 587
TaaI ACNGT 1 cut(s) 680
TaiI ACGT 1 cut(s) 776
TaqI TCGA 4 cut(s) 24, 342, 397, 504
TasI AATT 2 cut(s) 639, 724
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 624, 729, 916
Tru9I TTAA 3 cut(s) 624, 729, 916
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 5 cut(s) 110, 123, 238, 431, 705
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 3 cut(s) 68, 612, 810
TspRI CASTG 1 cut(s) 685
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 101, 424
XagI CCTNNNNNAGG 1 cut(s) 419
XceI RCATGY 1 cut(s) 808
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 2 cut(s) 293, 909
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.