Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010150

Physical Location & Seq

Genomic Coordinates Reverse (-)

4634056 .. 4636534

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACAATGAGGACAGGCGGTGAAAAAATAAAAGATGGAATCTTCGACGGCCAGCGAGCCAGCATTTCACACAAGCAACCTCTCTCTCTCTCTCTCTCTCTGTTCGTTTGTGTCTCCTCAGAGAAAAGAACTCTCTTTCTCTCTCTAAAACTCTCTGAGAGTCTCTCTCTCTCTAAAACCTCACAAGCTATGGCTCTTCCCCGGCACCATTTCCAACAGCACTACCCACCCCAACAACAACAACAGCAACAATCCAAGTCTTTCAGAAATTTGTACACAATCGACGGTCAGATGTCGCCAGCGGTGGCCTATTATGACCCCGGAAATTTACAGGATCACCCCCAGCAGCATCCTCCTTACGTTCCGCCCTTTCATGTAGAAGGGTTTGCGCCTGGTCCCGTGGCTGCAACGGATGGCAGCGATAATGGCGCTGATTTGCAGTGGCATTACGGTTTTGAATCCAAAAGGAAAAAGCTAAAGGAACAGGATTTCCTGGAGAACAACTCGCAGATATCGTCCATTGATTTCCTGCAACCGCGATCGGTCTCCACAGGCTTGGGTTTGTCCCTTGACAATACTCGAATGGTTTCTACGGGGGACTCATCACTGCTGTCAGTTATCGGCGATGATGTTGATCTTGAGCTACAGCGACAGGATGCTGAGATTGATAGATTCCTCAAGGCCCAGGGTGACCGATTGCGGCAAACTATCCTGGACAAGGTCCAAGCCACCCAGCTTCAGACTCTCTCAGCTGTGGAAGACAAAGTTCTTCGGAAGCTGCGAGAGAAAGAAGCAGAAGTGGAGAGCATTAACAAGAAGAATATGGAGCTTGAAGAGCGAATGGAACAGTTGGCTGTTGAAGCAGGTGCTTGGCAACAGATAGCCAGGCGCAACGAAAACATGATCGATCATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

306

Amino Acids

34.45

Weight (kDa)

5.88

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45976
fragaria_vesca	FvH4_2g34250 FvH4_2g34250
malus_domestica	MD08G1098300.v1.1 MD15G1080800.v1.1
prunus_persica	Prupe.1G433600_v2.0.a1 Prupe.1G433600_v2.0.a1
pyrus_communis	pycom08g08010 pycom15g07530
rosa_chinensis	RchiOBHm_Chr6g0308171
rosa_laevigata	RLG00000010662
rosa_multiflora	Rmu_co8496591.1_g000001 Rmu_sc0005706.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160390 Rroxscaffold_7G00160480
rosa_rugosa	Rorug06G0364400
rosa_samantha	Rh6AG473600 Rh6BG484400 Rh6CG489400 Rh6DG475600
rosa_wichuraiana	Rw6G041290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	538
AciI	CCGC	5 cut(s)	18, 302, 365, 536, 700
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	268, 325
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	718
AgsI	TTSAA	3 cut(s)	458, 833, 860
AjnI	CCWGG	5 cut(s)	391, 492, 684, 711, 884
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
AluBI	AGCT	7 cut(s)	188, 475, 643, 736, 752, 778, 829
AluI	AGCT	7 cut(s)	188, 475, 643, 736, 752, 778, 829
Alw26I	GTCTC	3 cut(s)	118, 167, 550
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	3 cut(s)	49, 306, 681
ApeKI	GCWGC	4 cut(s)	346, 404, 417, 778
ApoI	RAATTY	2 cut(s)	268, 325
Asp700I	GAANNNNTTC	1 cut(s)	586
AspLEI	GCGC	3 cut(s)	391, 431, 891
AspS9I	GGNCC	3 cut(s)	395, 682, 721
AsuC2I	CCSGG	2 cut(s)	202, 321
AsuHPI	GGTGA	3 cut(s)	32, 329, 701
AvaII	GGWCC	2 cut(s)	395, 721
BanI	GGYRCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	765
BbvI	GCAGC	4 cut(s)	358, 391, 429, 765
BccI	CCATC	2 cut(s)	29, 407
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	5 cut(s)	393, 494, 686, 713, 886
BcnI	CCSGG	2 cut(s)	202, 321
BcoDI	GTCTC	3 cut(s)	118, 167, 550
BfmI	CTRYAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	854
BisI	GCNGC	5 cut(s)	347, 405, 418, 701, 779
BlsI	GCNGC	5 cut(s)	348, 406, 419, 702, 780
Bme1390I	CCNGG	7 cut(s)	202, 321, 393, 494, 686, 713, 886
Bme18I	GGWCC	2 cut(s)	395, 721
BmgT120I	GGNCC	3 cut(s)	395, 682, 721
BmiI	GGNNCC	2 cut(s)	206, 397
BmrFI	CCNGG	7 cut(s)	202, 321, 393, 494, 686, 713, 886
BmsI	GCATC	2 cut(s)	358, 646
BpiI	GAAGAC	1 cut(s)	765
BplI	GAGNNNNNCTC	6 cut(s)	149, 181, 151, 183, 488, 520
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	659, 662
BpuMI	CCSGG	2 cut(s)	202, 321
Bsa29I	ATCGAT	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	5 cut(s)	200, 319, 399, 684, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	5 cut(s)	393, 494, 686, 713, 886
BseCI	ATCGAT	1 cut(s)	906
BseDI	CCNNGG	5 cut(s)	200, 319, 399, 684, 685
BseGI	GGATG	3 cut(s)	349, 418, 661
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	4 cut(s)	132, 147, 651, 762
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	358, 391, 429, 765
BseYI	CCCAGC	2 cut(s)	342, 732
Bsh1236I	CGCG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	3 cut(s)	51, 308, 683
BshNI	GGYRCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	906
BsiEI	CGRYCG	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	202, 321
BslFI	GGGAC	3 cut(s)	381, 550, 611
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	3 cut(s)	118, 167, 550
BsmFI	GGGAC	3 cut(s)	381, 550, 611
BsnI	GGCC	3 cut(s)	51, 308, 683
Bso31I	GGTCTC	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	334, 539, 634, 903, 907
BspACI	CCGC	5 cut(s)	18, 302, 365, 536, 700
BspANI	GGCC	3 cut(s)	51, 308, 683
BspCNI	CTCAG	4 cut(s)	131, 148, 652, 761
BspDI	ATCGAT	1 cut(s)	906
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	206, 397
BspMI	ACCTGC	1 cut(s)	854
BspPI	GGATC	1 cut(s)	342
BspQI	GCTCTTC	2 cut(s)	201, 828
BspT107I	GGYRCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	550
BsrGI	TGTACA	1 cut(s)	273
BssECI	CCNNGG	5 cut(s)	200, 319, 399, 684, 685
BssMI	GATC	5 cut(s)	334, 539, 634, 903, 907
Bst2UI	CCWGG	5 cut(s)	393, 494, 686, 713, 886
Bst4CI	ACNGT	3 cut(s)	287, 452, 849
Bst6I	CTCTTC	2 cut(s)	201, 828
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	53, 57, 61, 300
BstDEI	CTNAG	4 cut(s)	118, 156, 660, 748
BstDSI	CCRYGG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	689
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	3 cut(s)	349, 418, 661
BstFNI	CGCG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	3 cut(s)	391, 431, 891
BstKTI	GATC	5 cut(s)	337, 542, 637, 906, 910
BstMAI	GTCTC	3 cut(s)	118, 167, 550
BstMBI	GATC	5 cut(s)	334, 539, 634, 903, 907
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 835, 860
BstNI	CCWGG	5 cut(s)	393, 494, 686, 713, 886
BstPI	GGTNACC	1 cut(s)	689
BstSCI	CCNGG	7 cut(s)	200, 319, 391, 492, 684, 711, 884
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	358, 391, 429, 765
BstV2I	GAAGAC	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	906
BsuRI	GGCC	3 cut(s)	51, 308, 683
BsuTUI	ATCGAT	1 cut(s)	906
BtgI	CCRYGG	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	3 cut(s)	349, 418, 661
BtsI	GCAGTG	2 cut(s)	446, 605
BtsIMutI	CAGTG	2 cut(s)	446, 605
BveI	ACCTGC	1 cut(s)	854
Cac8I	GCNNGC	4 cut(s)	53, 57, 61, 300
CfoI	GCGC	3 cut(s)	391, 431, 891
Cfr13I	GGNCC	3 cut(s)	395, 682, 721
ClaI	ATCGAT	1 cut(s)	906
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	374, 901
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	118, 156, 660, 748
DpnI	GATC	5 cut(s)	336, 541, 636, 905, 909
DpnII	GATC	5 cut(s)	334, 539, 634, 903, 907
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	201, 828
EarI	CTCTTC	2 cut(s)	201, 828
EciI	GGCGGA	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	395, 721
Eco57I	CTGAAG	1 cut(s)	722
Eco91I	GGTNACC	1 cut(s)	689
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	689
EcoRII	CCWGG	5 cut(s)	391, 492, 684, 711, 884
EcoRV	GATATC	1 cut(s)	513
FaeI	CATG	2 cut(s)	377, 904
FaiI	YATR	5 cut(s)	191, 315, 375, 824, 902
FaqI	GGGAC	3 cut(s)	381, 550, 611
FatI	CATG	2 cut(s)	373, 900
Fnu4HI	GCNGC	5 cut(s)	347, 405, 418, 701, 779
FokI	GGATG	3 cut(s)	336, 425, 668
Fsp4HI	GCNGC	5 cut(s)	347, 405, 418, 701, 779
GlaI	GCGC	3 cut(s)	390, 430, 890
GluI	GCNGC	5 cut(s)	347, 405, 418, 701, 779
GsaI	CCCAGC	2 cut(s)	346, 736
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	51, 308, 683
HapII	CCGG	2 cut(s)	202, 321
HhaI	GCGC	3 cut(s)	391, 431, 891
Hin1II	CATG	2 cut(s)	377, 904
Hin6I	GCGC	3 cut(s)	389, 429, 889
HinP1I	GCGC	3 cut(s)	389, 429, 889
HinfI	GANTC	6 cut(s)	39, 160, 458, 599, 672, 742
HpaII	CCGG	2 cut(s)	202, 321
HphI	GGTGA	3 cut(s)	32, 329, 701
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	6 cut(s)	121, 157, 266, 291, 741, 774
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	50, 287
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	3 cut(s)	287, 452, 849
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	407, 439, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 835, 860
HpyF3I	CTNAG	4 cut(s)	118, 156, 660, 748
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	377, 904
HspAI	GCGC	3 cut(s)	389, 429, 889
Kzo9I	GATC	5 cut(s)	334, 539, 634, 903, 907
LguI	GCTCTTC	2 cut(s)	201, 828
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	4 cut(s)	358, 391, 429, 765
LweI	GCATC	2 cut(s)	358, 646
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	5 cut(s)	336, 541, 636, 905, 909
MboI	GATC	5 cut(s)	334, 539, 634, 903, 907
MboII	GAAGA	6 cut(s)	34, 188, 761, 770, 829, 845
MluCI	AATT	2 cut(s)	268, 325
MlyI	GAGTC	3 cut(s)	169, 593, 736
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	6 cut(s)	3, 90, 127, 190, 363, 686
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	1 cut(s)	810
MspA1I	CMGCKG	2 cut(s)	302, 752
MspI	CCGG	2 cut(s)	202, 321
MspR9I	CCNGG	7 cut(s)	202, 321, 393, 494, 686, 713, 886
MvaI	CCWGG	5 cut(s)	393, 494, 686, 713, 886
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	3 cut(s)	426, 835, 860
NciI	CCSGG	2 cut(s)	202, 321
NdeII	GATC	5 cut(s)	334, 539, 634, 903, 907
NlaIII	CATG	2 cut(s)	377, 904
NlaIV	GGNNCC	2 cut(s)	206, 397
NmuCI	GTSAC	1 cut(s)	689
PaqCI	CACCTGC	1 cut(s)	854
PasI	CCCWGGG	1 cut(s)	685
PciSI	GCTCTTC	2 cut(s)	201, 828
PcsI	WCGNNNNNNNCGW	2 cut(s)	512, 778
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	39, 458, 672
PflFI	GACNNNGTC	1 cut(s)	719
PfoI	TCCNGGA	2 cut(s)	492, 711
PkrI	GCNGC	5 cut(s)	348, 406, 419, 702, 780
Ple19I	CGATCG	1 cut(s)	542
PleI	GAGTC	3 cut(s)	168, 593, 736
PpsI	GAGTC	3 cut(s)	168, 593, 736
Psp6I	CCWGG	5 cut(s)	391, 492, 684, 711, 884
PspEI	GGTNACC	1 cut(s)	689
PspFI	CCCAGC	2 cut(s)	342, 732
PspGI	CCWGG	5 cut(s)	391, 492, 684, 711, 884
PspN4I	GGNNCC	2 cut(s)	206, 397
PspPI	GGNCC	3 cut(s)	395, 682, 721
PsyI	GACNNNGTC	1 cut(s)	719
PvuI	CGATCG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SapI	GCTCTTC	2 cut(s)	201, 828
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	5 cut(s)	347, 405, 418, 701, 779
Sau3AI	GATC	5 cut(s)	334, 539, 634, 903, 907
Sau96I	GGNCC	3 cut(s)	395, 682, 721
SchI	GAGTC	3 cut(s)	169, 593, 736
ScrFI	CCNGG	7 cut(s)	202, 321, 393, 494, 686, 713, 886
SfaNI	GCATC	2 cut(s)	358, 646
SfcI	CTRYAG	1 cut(s)	644
SinI	GGWCC	2 cut(s)	395, 721
SmlI	CTYRAG	2 cut(s)	638, 677
SmoI	CTYRAG	2 cut(s)	638, 677
Sse9I	AATT	2 cut(s)	268, 325
SsiI	CCGC	5 cut(s)	18, 302, 365, 536, 700
StyD4I	CCNGG	7 cut(s)	200, 319, 391, 492, 684, 711, 884
TaaI	ACNGT	3 cut(s)	287, 452, 849
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	45, 282, 580, 906
TaqII	GACCGA	2 cut(s)	532, 708
TasI	AATT	2 cut(s)	268, 325
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	3 cut(s)	39, 458, 672
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	2 cut(s)	446, 612
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	4 cut(s)	346, 404, 417, 778
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	2 cut(s)	446, 612
Tth111I	GACNNNGTC	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	395, 721
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	2 cut(s)	268, 325
XmnI	GAANNNNTTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.