Prupe.1G569400_v2.0.a1

pentatricopeptide repeat-containing protein At1g31840

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
46423741 .. 46433489
9749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G569400.2

Sequence Viewer

Length: 2478 bp
ATGATATCTTCCTCTTCATTCTCGAACGTATTATTCCTCACTCGACACTCTCTTCGTTTCTATTCGCCTTATTCTCTATTCTCTTTCAAAGCTCTTATTCACCACATCTCAAACGCATTTCTCCAATTTAACCCCAAACTCTTGAACCCCCATTTTGTTTCCAAATTACAGCCCAACCATGTCCACCACATCCCTCTCAGCCTCCAATCCAATTCCATTTCCGCCTATCACTTGCTTGATTGGTCCTGTAACTCTCCCGGCTTACACCACTCCCCACAGTCCTTTTGTGCCCTTACTCATCTGCTGCTCCGTCACCGAAAGCTGGCTCCGGCTTCACACCTTTTCAATACAATGGTACGCCAATTTGGGACTCATTTTCACTTTTTTGCTGCTTTTTCTGAGATTTCTCCCAATTATGCTTCGGATTCTAGTGATCTTTATAGCTTTCTGATTGAGAACTTTTGTCGGAATGGGATGCTAGATTCGTCTATTGAGACATTCATTCATATGTGTAAATTGGGAGTTCCGGTGTCTGCTTATGTGTTATCTAGAATGTTGACTTTTTTGGTTGATTCAAATTGTGTCCATGTGATTCTTGATTTATATGGACAAGTGTGTAAAGCATTGAGAGGACAGTGTTTCTGTGCGTATGAGTTTGTTATGGTTGCTCTTCTAAACAAGGGTAAAGTTGAAACGGGTGTGGATTTTCATTCCGCTGTGATTGAAGGAGGCTTTGTGGTTGATATTGTTGCTTGTAACAAGATTTTAAAGCGTCTTTGTAAAGAAAATCTGATTGGAGTTGGGGAAGATTTCTTTAATGTATTGATGATGGGTGGTCCCGAGCCAAATGTGGTGACATTCAGCACGATGATTAACGCGTATTGTAAGGATGAGAAATTGGAGGAGGCCATTAAGCTTTATAAGGTTATGATAGAGAAGGGTGTCAGCCCTGACTTGGTTGTATATAGTATTCTAGTTGATGGTCTTTTTAAGGCAGGGAAATTGGAGGAGGGGCTTCGACTGTTTTCAGAGGCATTAGGTAGCGACATTAGGTTGGATGTAGTCATTTTCAGTTCTGTTATGGATGCCTATGTGAGAATTGGAGACTTGGTGAAGTCAGTGGAGGTCTACGGAAGAATGCTGAAAGAGGGGATCTCGCCAAACCCTGTTAGTTACACCATTCTTATAAATGGTATGTGTCAGGATGGTAAGGTCATGGAGGCTTGTGGCATATTCGGTCAGATTGTGAAGTGTGGTTTTGTGCCATCCATTCTAACTTACAGTAGTTTGATTGATGGAATGTGCAAATTGGGGAATTTAAAGGATGCATTTTACCTGTATGAGAGTATGATCAAGACTGGCTATGAACCTGATATTATTCTTTATGGTGTGCTAGTAAATGGCCTTTGCAAACAGGGGCTGATGGGTGATGCTCTTAGGTTTTTCTTTCAGGCTGTTTATAGGGGTGTAAAGCCCAATGTCTATACTTTTAATATGTTAATAGATGGTTGCTGTAGATTAAAAAGACTAAGTGATGCTGTGAAGGTGTTCATCCAAATGGGAGTTTATAACGTAAAACCTGATATGGTGACGTATACTGTGATTATTAAGGGTATCTCTGAAGTAGGGAGATTAAAAGATGCGTTAGTATTTTTTTTCCAATCATTAAAGAAGGGGTTCTTGCCCGATGTTGTTATGCATTGCACACTAATTGATGGTTGCTGCAAGCAGAAACATGTGTATTATGGACTCCGAATTCTAGAGATGATGCGAAGAAATGGAGTAAGTCCTGATATTGCCATTTATAATGTTCTCATTAATATGCTTTTCAAAGAAAGTTATTTAGAAGCTGCACAAGAACTCTTTGAGCAACTTACTGAAAGTGGGCCAGAACCTGACATTGTTACGTACAACACAATGATTTGTGGTTATTGCTCTCTGAGAAGGTTAGAAGCAGCTGTTCAACTTTTTCAAAAGCTGATACAGGGACAGTGTAAACCCAATGCCATTACTTGTACTATACTGATTGATGCTTTTTGCAAAGAAGGTAACATGGATGATGCCATGTTGATGTTTGATAAAATGCGGGAAAAGGATCCCGAACCAAATTTGGTCACATATAGTTGTCTTATTGATGGTTATTTTAAATCTGAAAACATGAAAAGTGCATTTGAACTGCACGAAGAGATGCTTAAAAACATCTCTCCCAATAGAGTCAGTTATAGCATCCTCATGGATGGTCTTTGCAAGAGAGGACTAACGGAGAGAGCATCCCTTGTGTTTCATTGTGCTATAGAAAGGGGTTTGTTGCTTGATGTAATAGCATATGGGATTCTGATTCGTGGTTACTGCAAGGTAGGAAGAATGGCAGAAGCCCTCATTTTGTACGGCCATATGTTAATTAGTGGCATCATGCCGGACGCTGTCATACAAAGGACGATCACTGAGCATATTCTTGAAGCTGATCAACAGAAATAA

Protein Analysis

826

Amino Acids

92.78

Weight (kDa)

6.9

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 921, 1187, 1569, 1806
AccI GTMKAC 2 cut(s) 1128, 1595
AccII CGCG 1 cut(s) 878
AciI CCGC 3 cut(s) 222, 714, 2086
AclWI GGATC 3 cut(s) 1160, 2090, 2103
AcoI YGGCCR 1 cut(s) 2389
AcsI RAATTY 3 cut(s) 1315, 1755, 2107
AcuI CTGAAG 1 cut(s) 1641
AfaI GTAC 4 cut(s) 357, 1910, 2017, 2387
AfiI CCNNNNNNNGG 2 cut(s) 322, 955
AflIII ACRYGT 2 cut(s) 876, 1735
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AluBI AGCT 8 cut(s) 92, 322, 444, 916, 1850, 1958, 1978, 2462
AluI AGCT 8 cut(s) 92, 322, 444, 916, 1850, 1958, 1978, 2462
Alw26I GTCTC 2 cut(s) 488, 1098
AlwI GGATC 3 cut(s) 1160, 2090, 2103
AlwNI CAGNNNCTG 2 cut(s) 1420, 1895
Ama87I CYCGRG 1 cut(s) 839
AoxI GGCC 4 cut(s) 906, 1402, 1886, 2389
ApeKI GCWGC 5 cut(s) 304, 389, 1722, 1850, 1955
ApoI RAATTY 3 cut(s) 1315, 1755, 2107
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AseI ATTAAT 1 cut(s) 1818
Asp700I GAANNNNTTC 2 cut(s) 1547, 1676
AspS9I GGNCC 3 cut(s) 243, 836, 1886
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 6 cut(s) 92, 305, 865, 1123, 1439, 1600
AvaI CYCGRG 1 cut(s) 839
AvaII GGWCC 2 cut(s) 243, 836
BaeGI GKGCMC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 2095
BbvI GCAGC 5 cut(s) 291, 376, 1709, 1837, 1967
BceAI ACGGC 1 cut(s) 2404
BclI TGATCA 2 cut(s) 1350, 2464
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 488, 1098
BfaI CTAG 6 cut(s) 429, 479, 549, 974, 1394, 1760
BfmI CTRYAG 2 cut(s) 1513, 2292
BisI GCNGC 5 cut(s) 305, 390, 1723, 1851, 1956
BlsI GCNGC 5 cut(s) 306, 391, 1724, 1852, 1957
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 243, 836
BmeT110I CYCGRG 1 cut(s) 839
BmgT120I GGNCC 3 cut(s) 243, 836, 1886
BmiI GGNNCC 3 cut(s) 327, 838, 2097
BmrFI CCNGG 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 1139, 1171
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 1908
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 6 cut(s) 513, 543, 720, 750, 1095, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 955
Bse1I ACTGG 1 cut(s) 1363
Bse3DI GCAATG 1 cut(s) 1699
BseLI CCNNNNNNNGG 2 cut(s) 322, 955
BseMI GCAATG 1 cut(s) 1699
BseMII CTCAG 4 cut(s) 211, 390, 1931, 2436
BseNI ACTGG 1 cut(s) 1363
BseRI GAGGAG 2 cut(s) 917, 1022
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 5 cut(s) 291, 376, 1709, 1837, 1967
BsgI GTGCAG 2 cut(s) 1836, 2162
Bsh1236I CGCG 1 cut(s) 878
BshFI GGCC 4 cut(s) 908, 1404, 1888, 2391
BsiHKCI CYCGRG 1 cut(s) 839
BsiSI CCGG 4 cut(s) 258, 329, 527, 2417
BslFI GGGAC 3 cut(s) 382, 822, 2001
BslI CCNNNNNNNGG 2 cut(s) 322, 955
BsmAI GTCTC 2 cut(s) 488, 1098
BsmFI GGGAC 3 cut(s) 382, 822, 2001
BsmI GAATGC 1 cut(s) 1143
BsnI GGCC 4 cut(s) 908, 1404, 1888, 2391
BsoBI CYCGRG 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
BspACI CCGC 3 cut(s) 222, 714, 2086
BspANI GGCC 4 cut(s) 908, 1404, 1888, 2391
BspCNI CTCAG 4 cut(s) 210, 391, 1932, 2437
BspFNI CGCG 1 cut(s) 878
BspLI GGNNCC 3 cut(s) 327, 838, 2097
BspPI GGATC 3 cut(s) 1160, 2090, 2103
BspQI GCTCTTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 1699
BsrI ACTGG 1 cut(s) 1363
BssMI GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
BssNAI GTATAC 1 cut(s) 1596
Bst1107I GTATAC 1 cut(s) 1596
Bst4CI ACNGT 6 cut(s) 279, 636, 1023, 1283, 1600, 1992
Bst6I CTCTTC 4 cut(s) 19, 57, 675, 2178
BstBAI YACGTR 1 cut(s) 1908
BstC8I GCNNGC 2 cut(s) 324, 1727
BstDEI CTNAG 6 cut(s) 197, 399, 1436, 1529, 1940, 2445
BstFNI CGCG 1 cut(s) 878
BstKTI GATC 6 cut(s) 436, 1155, 1353, 2098, 2442, 2467
BstMAI GTCTC 2 cut(s) 488, 1098
BstMBI GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
BstNSI RCATGY 1 cut(s) 1739
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 1513, 2292
BstSLI GKGCMC 1 cut(s) 292
BstSNI TACGTA 1 cut(s) 1908
BstUI CGCG 1 cut(s) 878
BstV1I GCAGC 5 cut(s) 291, 376, 1709, 1837, 1967
BstX2I RGATCY 2 cut(s) 1152, 2095
BstYI RGATCY 2 cut(s) 1152, 2095
BstZ17I GTATAC 1 cut(s) 1596
BsuRI GGCC 4 cut(s) 908, 1404, 1888, 2391
BtsIMutI CAGTG 4 cut(s) 641, 1125, 1997, 2442
Cac8I GCNNGC 2 cut(s) 324, 1727
CaiI CAGNNNCTG 2 cut(s) 1420, 1895
Cfr13I GGNCC 3 cut(s) 243, 836, 1886
CseI GACGC 2 cut(s) 761, 2429
Csp6I GTAC 4 cut(s) 356, 1909, 2016, 2386
CviAII CATG 9 cut(s) 179, 587, 1216, 1736, 2053, 2065, 2158, 2233, 2413
CviQI GTAC 4 cut(s) 356, 1909, 2016, 2386
DdeI CTNAG 6 cut(s) 197, 399, 1436, 1529, 1940, 2445
DpnI GATC 6 cut(s) 435, 1154, 1352, 2097, 2441, 2466
DpnII GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
DraI TTTAAA 3 cut(s) 768, 1320, 2146
EaeI YGGCCR 1 cut(s) 2389
Eam1104I CTCTTC 4 cut(s) 19, 57, 675, 2178
EarI CTCTTC 4 cut(s) 19, 57, 675, 2178
EciI GGCGGA 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 1908
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 243, 836
Eco57I CTGAAG 1 cut(s) 1641
Eco88I CYCGRG 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 1755
EcoRV GATATC 1 cut(s) 6
EcoT22I ATGCAT 2 cut(s) 1330, 1701
FaeI CATG 9 cut(s) 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416
FalI AAGNNNNNCTT 4 cut(s) 1664, 1696, 2175, 2207
FaqI GGGAC 3 cut(s) 382, 822, 2001
FatI CATG 9 cut(s) 178, 586, 1215, 1735, 2052, 2064, 2157, 2232, 2412
FauI CCCGC 1 cut(s) 2079
FauNDI CATATG 3 cut(s) 507, 2326, 2394
FbaI TGATCA 2 cut(s) 1350, 2464
FblI GTMKAC 2 cut(s) 1128, 1595
Fnu4HI GCNGC 5 cut(s) 305, 390, 1723, 1851, 1956
Fsp4HI GCNGC 5 cut(s) 305, 390, 1723, 1851, 1956
FspBI CTAG 6 cut(s) 429, 479, 549, 974, 1394, 1760
GluI GCNGC 5 cut(s) 305, 390, 1723, 1851, 1956
HaeIII GGCC 4 cut(s) 908, 1404, 1888, 2391
HapII CCGG 4 cut(s) 258, 329, 527, 2417
HgaI GACGC 2 cut(s) 761, 2429
Hin1II CATG 9 cut(s) 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 9 cut(s) 370, 425, 482, 572, 592, 1749, 2214, 2332, 2338
HpaII CCGG 4 cut(s) 258, 329, 527, 2417
HphI GGTGA 6 cut(s) 92, 305, 865, 1123, 1439, 1600
Hpy166II GTNNAC 5 cut(s) 184, 558, 1129, 1596, 1997
Hpy8I GTNNAC 5 cut(s) 184, 558, 1129, 1596, 1997
HpyAV CCTTC 6 cut(s) 719, 931, 1537, 1666, 1938, 2039
HpyCH4III ACNGT 6 cut(s) 279, 636, 1023, 1283, 1600, 1992
HpyCH4IV ACGT 4 cut(s) 27, 1572, 1592, 1907
HpyF3I CTNAG 6 cut(s) 197, 399, 1436, 1529, 1940, 2445
HpySE526I ACGT 4 cut(s) 27, 1572, 1592, 1907
Hsp92II CATG 9 cut(s) 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416
Ksp22I TGATCA 2 cut(s) 1350, 2464
Kzo9I GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 312, 331
Lsp1109I GCAGC 5 cut(s) 291, 376, 1709, 1837, 1967
MaeI CTAG 6 cut(s) 429, 479, 549, 974, 1394, 1760
MaeII ACGT 4 cut(s) 27, 1572, 1592, 1907
MalI GATC 6 cut(s) 435, 1154, 1352, 2097, 2441, 2466
MboI GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
MboII GAAGA 8 cut(s) 6, 44, 662, 818, 1146, 1785, 2195, 2373
MflI RGATCY 2 cut(s) 1152, 2095
MhlI GDGCHC 1 cut(s) 292
MluI ACGCGT 1 cut(s) 876
MlyI GAGTC 3 cut(s) 364, 1743, 2223
MmeI TCCRAC 2 cut(s) 446, 1035
Mph1103I ATGCAT 2 cut(s) 1330, 1701
MroXI GAANNNNTTC 2 cut(s) 1547, 1676
MslI CAYNNNNRTG 5 cut(s) 506, 1556, 1820, 2069, 2231
MspA1I CMGCKG 2 cut(s) 716, 1958
MspI CCGG 4 cut(s) 258, 329, 527, 2417
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 1143
MvnI CGCG 1 cut(s) 878
NciI CCSGG 1 cut(s) 258
NdeI CATATG 3 cut(s) 507, 2326, 2394
NdeII GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
NlaIII CATG 9 cut(s) 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416
NlaIV GGNNCC 3 cut(s) 327, 838, 2097
NmuCI GTSAC 4 cut(s) 311, 853, 1588, 2113
NsiI ATGCAT 2 cut(s) 1330, 1701
NspI RCATGY 1 cut(s) 1739
PciI ACATGT 1 cut(s) 1735
PciSI GCTCTTC 1 cut(s) 675
PctI GAATGC 1 cut(s) 1143
PdmI GAANNNNTTC 2 cut(s) 1547, 1676
PfeI GAWTC 6 cut(s) 425, 482, 572, 592, 2332, 2338
PflFI GACNNNGTC 1 cut(s) 2423
PkrI GCNGC 5 cut(s) 306, 391, 1724, 1852, 1957
PleI GAGTC 3 cut(s) 364, 1743, 2222
PpsI GAGTC 3 cut(s) 364, 1743, 2222
Ppu21I YACGTR 1 cut(s) 1908
PscI ACATGT 1 cut(s) 1735
PshBI ATTAAT 1 cut(s) 1818
PsiI TTATAA 4 cut(s) 921, 1187, 1569, 1806
PspN4I GGNNCC 3 cut(s) 327, 838, 2097
PspPI GGNCC 3 cut(s) 243, 836, 1886
PstNI CAGNNNCTG 2 cut(s) 1420, 1895
PsuI RGATCY 2 cut(s) 1152, 2095
PsyI GACNNNGTC 1 cut(s) 2423
PvuII CAGCTG 1 cut(s) 1958
RsaI GTAC 4 cut(s) 357, 1910, 2017, 2387
RsaNI GTAC 4 cut(s) 356, 1909, 2016, 2386
RseI CAYNNNNRTG 5 cut(s) 506, 1556, 1820, 2069, 2231
SapI GCTCTTC 1 cut(s) 675
SatI GCNGC 5 cut(s) 305, 390, 1723, 1851, 1956
Sau3AI GATC 6 cut(s) 433, 1152, 1350, 2095, 2439, 2464
Sau96I GGNCC 3 cut(s) 243, 836, 1886
SchI GAGTC 3 cut(s) 364, 1743, 2223
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 1513, 2292
SinI GGWCC 2 cut(s) 243, 836
SmiMI CAYNNNNRTG 5 cut(s) 506, 1556, 1820, 2069, 2231
SnaBI TACGTA 1 cut(s) 1908
SsiI CCGC 3 cut(s) 222, 714, 2086
SspMI CTAG 6 cut(s) 429, 479, 549, 974, 1394, 1760
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 279, 636, 1023, 1283, 1600, 1992
TaiI ACGT 4 cut(s) 30, 1575, 1595, 1910
TaqI TCGA 3 cut(s) 23, 43, 1018
TaqII GACCGA 1 cut(s) 1226
TatI WGTACW 1 cut(s) 2015
TfiI GAWTC 6 cut(s) 425, 482, 572, 592, 2332, 2338
TscAI CASTG 4 cut(s) 641, 1125, 1997, 2449
TseFI GTSAC 4 cut(s) 311, 853, 1588, 2113
TseI GCWGC 5 cut(s) 304, 389, 1722, 1850, 1955
Tsp45I GTSAC 4 cut(s) 311, 853, 1588, 2113
TspDTI ATGAA 8 cut(s) 6, 490, 494, 698, 1380, 1540, 2174, 2273
TspGWI ACGGA 3 cut(s) 299, 1146, 2276
TspRI CASTG 4 cut(s) 641, 1125, 1997, 2449
Tth111I GACNNNGTC 1 cut(s) 2423
VpaK11BI GGWCC 2 cut(s) 243, 836
VspI ATTAAT 1 cut(s) 1818
XapI RAATTY 3 cut(s) 1315, 1755, 2107
XbaI TCTAGA 2 cut(s) 548, 1759
XceI RCATGY 1 cut(s) 1739
XmiI GTMKAC 2 cut(s) 1128, 1595
XmnI GAANNNNTTC 2 cut(s) 1547, 1676
XspI CTAG 6 cut(s) 429, 479, 549, 974, 1394, 1760
Zsp2I ATGCAT 2 cut(s) 1330, 1701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.