pentatricopeptide repeat-containing protein At1g31840
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31840 AT1G31840 |
| malus_domestica | MD12G1033400.v1.1 |
| prunus_persica | Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 |
| pyrus_communis | pycom12g03070 |
| rosa_chinensis | RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311 |
| rosa_laevigata | RLG00000001660 |
| rosa_multiflora | Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00232240 |
| rosa_rugosa | Rorug07G0241200 |
| rosa_samantha | Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700 |
| rosa_wichuraiana | Rw7G032710 Rw7G032740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 921, 1187, 1569, 1806 |
| AccI | GTMKAC | 2 cut(s) | 1128, 1595 |
| AccII | CGCG | 1 cut(s) | 878 |
| AciI | CCGC | 3 cut(s) | 222, 714, 2086 |
| AclWI | GGATC | 3 cut(s) | 1160, 2090, 2103 |
| AcoI | YGGCCR | 1 cut(s) | 2389 |
| AcsI | RAATTY | 3 cut(s) | 1315, 1755, 2107 |
| AcuI | CTGAAG | 1 cut(s) | 1641 |
| AfaI | GTAC | 4 cut(s) | 357, 1910, 2017, 2387 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 322, 955 |
| AflIII | ACRYGT | 2 cut(s) | 876, 1735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 777, 809 |
| AluBI | AGCT | 8 cut(s) | 92, 322, 444, 916, 1850, 1958, 1978, 2462 |
| AluI | AGCT | 8 cut(s) | 92, 322, 444, 916, 1850, 1958, 1978, 2462 |
| Alw26I | GTCTC | 2 cut(s) | 488, 1098 |
| AlwI | GGATC | 3 cut(s) | 1160, 2090, 2103 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1420, 1895 |
| Ama87I | CYCGRG | 1 cut(s) | 839 |
| AoxI | GGCC | 4 cut(s) | 906, 1402, 1886, 2389 |
| ApeKI | GCWGC | 5 cut(s) | 304, 389, 1722, 1850, 1955 |
| ApoI | RAATTY | 3 cut(s) | 1315, 1755, 2107 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 36, 68 |
| AseI | ATTAAT | 1 cut(s) | 1818 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1547, 1676 |
| AspS9I | GGNCC | 3 cut(s) | 243, 836, 1886 |
| AsuC2I | CCSGG | 1 cut(s) | 258 |
| AsuHPI | GGTGA | 6 cut(s) | 92, 305, 865, 1123, 1439, 1600 |
| AvaI | CYCGRG | 1 cut(s) | 839 |
| AvaII | GGWCC | 2 cut(s) | 243, 836 |
| BaeGI | GKGCMC | 1 cut(s) | 292 |
| BamHI | GGATCC | 1 cut(s) | 2095 |
| BbvI | GCAGC | 5 cut(s) | 291, 376, 1709, 1837, 1967 |
| BceAI | ACGGC | 1 cut(s) | 2404 |
| BclI | TGATCA | 2 cut(s) | 1350, 2464 |
| BcnI | CCSGG | 1 cut(s) | 258 |
| BcoDI | GTCTC | 2 cut(s) | 488, 1098 |
| BfaI | CTAG | 6 cut(s) | 429, 479, 549, 974, 1394, 1760 |
| BfmI | CTRYAG | 2 cut(s) | 1513, 2292 |
| BisI | GCNGC | 5 cut(s) | 305, 390, 1723, 1851, 1956 |
| BlsI | GCNGC | 5 cut(s) | 306, 391, 1724, 1852, 1957 |
| Bme1390I | CCNGG | 1 cut(s) | 258 |
| Bme18I | GGWCC | 2 cut(s) | 243, 836 |
| BmeT110I | CYCGRG | 1 cut(s) | 839 |
| BmgT120I | GGNCC | 3 cut(s) | 243, 836, 1886 |
| BmiI | GGNNCC | 3 cut(s) | 327, 838, 2097 |
| BmrFI | CCNGG | 1 cut(s) | 258 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1139, 1171 |
| BpuMI | CCSGG | 1 cut(s) | 258 |
| BsaAI | YACGTR | 1 cut(s) | 1908 |
| BsaWI | WCCGGW | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 513, 543, 720, 750, 1095, 1125 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 322, 955 |
| Bse1I | ACTGG | 1 cut(s) | 1363 |
| Bse3DI | GCAATG | 1 cut(s) | 1699 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 322, 955 |
| BseMI | GCAATG | 1 cut(s) | 1699 |
| BseMII | CTCAG | 4 cut(s) | 211, 390, 1931, 2436 |
| BseNI | ACTGG | 1 cut(s) | 1363 |
| BseRI | GAGGAG | 2 cut(s) | 917, 1022 |
| BseSI | GKGCMC | 1 cut(s) | 292 |
| BseXI | GCAGC | 5 cut(s) | 291, 376, 1709, 1837, 1967 |
| BsgI | GTGCAG | 2 cut(s) | 1836, 2162 |
| Bsh1236I | CGCG | 1 cut(s) | 878 |
| BshFI | GGCC | 4 cut(s) | 908, 1404, 1888, 2391 |
| BsiHKCI | CYCGRG | 1 cut(s) | 839 |
| BsiSI | CCGG | 4 cut(s) | 258, 329, 527, 2417 |
| BslFI | GGGAC | 3 cut(s) | 382, 822, 2001 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 322, 955 |
| BsmAI | GTCTC | 2 cut(s) | 488, 1098 |
| BsmFI | GGGAC | 3 cut(s) | 382, 822, 2001 |
| BsmI | GAATGC | 1 cut(s) | 1143 |
| BsnI | GGCC | 4 cut(s) | 908, 1404, 1888, 2391 |
| BsoBI | CYCGRG | 1 cut(s) | 839 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| BspACI | CCGC | 3 cut(s) | 222, 714, 2086 |
| BspANI | GGCC | 4 cut(s) | 908, 1404, 1888, 2391 |
| BspCNI | CTCAG | 4 cut(s) | 210, 391, 1932, 2437 |
| BspFNI | CGCG | 1 cut(s) | 878 |
| BspLI | GGNNCC | 3 cut(s) | 327, 838, 2097 |
| BspPI | GGATC | 3 cut(s) | 1160, 2090, 2103 |
| BspQI | GCTCTTC | 1 cut(s) | 675 |
| BsrDI | GCAATG | 1 cut(s) | 1699 |
| BsrI | ACTGG | 1 cut(s) | 1363 |
| BssMI | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| BssNAI | GTATAC | 1 cut(s) | 1596 |
| Bst1107I | GTATAC | 1 cut(s) | 1596 |
| Bst4CI | ACNGT | 6 cut(s) | 279, 636, 1023, 1283, 1600, 1992 |
| Bst6I | CTCTTC | 4 cut(s) | 19, 57, 675, 2178 |
| BstBAI | YACGTR | 1 cut(s) | 1908 |
| BstC8I | GCNNGC | 2 cut(s) | 324, 1727 |
| BstDEI | CTNAG | 6 cut(s) | 197, 399, 1436, 1529, 1940, 2445 |
| BstFNI | CGCG | 1 cut(s) | 878 |
| BstKTI | GATC | 6 cut(s) | 436, 1155, 1353, 2098, 2442, 2467 |
| BstMAI | GTCTC | 2 cut(s) | 488, 1098 |
| BstMBI | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| BstNSI | RCATGY | 1 cut(s) | 1739 |
| BstSCI | CCNGG | 1 cut(s) | 256 |
| BstSFI | CTRYAG | 2 cut(s) | 1513, 2292 |
| BstSLI | GKGCMC | 1 cut(s) | 292 |
| BstSNI | TACGTA | 1 cut(s) | 1908 |
| BstUI | CGCG | 1 cut(s) | 878 |
| BstV1I | GCAGC | 5 cut(s) | 291, 376, 1709, 1837, 1967 |
| BstX2I | RGATCY | 2 cut(s) | 1152, 2095 |
| BstYI | RGATCY | 2 cut(s) | 1152, 2095 |
| BstZ17I | GTATAC | 1 cut(s) | 1596 |
| BsuRI | GGCC | 4 cut(s) | 908, 1404, 1888, 2391 |
| BtsIMutI | CAGTG | 4 cut(s) | 641, 1125, 1997, 2442 |
| Cac8I | GCNNGC | 2 cut(s) | 324, 1727 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1420, 1895 |
| Cfr13I | GGNCC | 3 cut(s) | 243, 836, 1886 |
| CseI | GACGC | 2 cut(s) | 761, 2429 |
| Csp6I | GTAC | 4 cut(s) | 356, 1909, 2016, 2386 |
| CviAII | CATG | 9 cut(s) | 179, 587, 1216, 1736, 2053, 2065, 2158, 2233, 2413 |
| CviQI | GTAC | 4 cut(s) | 356, 1909, 2016, 2386 |
| DdeI | CTNAG | 6 cut(s) | 197, 399, 1436, 1529, 1940, 2445 |
| DpnI | GATC | 6 cut(s) | 435, 1154, 1352, 2097, 2441, 2466 |
| DpnII | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| DraI | TTTAAA | 3 cut(s) | 768, 1320, 2146 |
| EaeI | YGGCCR | 1 cut(s) | 2389 |
| Eam1104I | CTCTTC | 4 cut(s) | 19, 57, 675, 2178 |
| EarI | CTCTTC | 4 cut(s) | 19, 57, 675, 2178 |
| EciI | GGCGGA | 1 cut(s) | 211 |
| Eco105I | TACGTA | 1 cut(s) | 1908 |
| Eco32I | GATATC | 1 cut(s) | 6 |
| Eco47I | GGWCC | 2 cut(s) | 243, 836 |
| Eco57I | CTGAAG | 1 cut(s) | 1641 |
| Eco88I | CYCGRG | 1 cut(s) | 839 |
| EcoRI | GAATTC | 1 cut(s) | 1755 |
| EcoRV | GATATC | 1 cut(s) | 6 |
| EcoT22I | ATGCAT | 2 cut(s) | 1330, 1701 |
| FaeI | CATG | 9 cut(s) | 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1664, 1696, 2175, 2207 |
| FaqI | GGGAC | 3 cut(s) | 382, 822, 2001 |
| FatI | CATG | 9 cut(s) | 178, 586, 1215, 1735, 2052, 2064, 2157, 2232, 2412 |
| FauI | CCCGC | 1 cut(s) | 2079 |
| FauNDI | CATATG | 3 cut(s) | 507, 2326, 2394 |
| FbaI | TGATCA | 2 cut(s) | 1350, 2464 |
| FblI | GTMKAC | 2 cut(s) | 1128, 1595 |
| Fnu4HI | GCNGC | 5 cut(s) | 305, 390, 1723, 1851, 1956 |
| Fsp4HI | GCNGC | 5 cut(s) | 305, 390, 1723, 1851, 1956 |
| FspBI | CTAG | 6 cut(s) | 429, 479, 549, 974, 1394, 1760 |
| GluI | GCNGC | 5 cut(s) | 305, 390, 1723, 1851, 1956 |
| HaeIII | GGCC | 4 cut(s) | 908, 1404, 1888, 2391 |
| HapII | CCGG | 4 cut(s) | 258, 329, 527, 2417 |
| HgaI | GACGC | 2 cut(s) | 761, 2429 |
| Hin1II | CATG | 9 cut(s) | 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 1 cut(s) | 914 |
| HinfI | GANTC | 9 cut(s) | 370, 425, 482, 572, 592, 1749, 2214, 2332, 2338 |
| HpaII | CCGG | 4 cut(s) | 258, 329, 527, 2417 |
| HphI | GGTGA | 6 cut(s) | 92, 305, 865, 1123, 1439, 1600 |
| Hpy166II | GTNNAC | 5 cut(s) | 184, 558, 1129, 1596, 1997 |
| Hpy8I | GTNNAC | 5 cut(s) | 184, 558, 1129, 1596, 1997 |
| HpyAV | CCTTC | 6 cut(s) | 719, 931, 1537, 1666, 1938, 2039 |
| HpyCH4III | ACNGT | 6 cut(s) | 279, 636, 1023, 1283, 1600, 1992 |
| HpyCH4IV | ACGT | 4 cut(s) | 27, 1572, 1592, 1907 |
| HpyF3I | CTNAG | 6 cut(s) | 197, 399, 1436, 1529, 1940, 2445 |
| HpySE526I | ACGT | 4 cut(s) | 27, 1572, 1592, 1907 |
| Hsp92II | CATG | 9 cut(s) | 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416 |
| Ksp22I | TGATCA | 2 cut(s) | 1350, 2464 |
| Kzo9I | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| LguI | GCTCTTC | 1 cut(s) | 675 |
| LmnI | GCTCC | 2 cut(s) | 312, 331 |
| Lsp1109I | GCAGC | 5 cut(s) | 291, 376, 1709, 1837, 1967 |
| MaeI | CTAG | 6 cut(s) | 429, 479, 549, 974, 1394, 1760 |
| MaeII | ACGT | 4 cut(s) | 27, 1572, 1592, 1907 |
| MalI | GATC | 6 cut(s) | 435, 1154, 1352, 2097, 2441, 2466 |
| MboI | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| MboII | GAAGA | 8 cut(s) | 6, 44, 662, 818, 1146, 1785, 2195, 2373 |
| MflI | RGATCY | 2 cut(s) | 1152, 2095 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MluI | ACGCGT | 1 cut(s) | 876 |
| MlyI | GAGTC | 3 cut(s) | 364, 1743, 2223 |
| MmeI | TCCRAC | 2 cut(s) | 446, 1035 |
| Mph1103I | ATGCAT | 2 cut(s) | 1330, 1701 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1547, 1676 |
| MslI | CAYNNNNRTG | 5 cut(s) | 506, 1556, 1820, 2069, 2231 |
| MspA1I | CMGCKG | 2 cut(s) | 716, 1958 |
| MspI | CCGG | 4 cut(s) | 258, 329, 527, 2417 |
| MspR9I | CCNGG | 1 cut(s) | 258 |
| Mva1269I | GAATGC | 1 cut(s) | 1143 |
| MvnI | CGCG | 1 cut(s) | 878 |
| NciI | CCSGG | 1 cut(s) | 258 |
| NdeI | CATATG | 3 cut(s) | 507, 2326, 2394 |
| NdeII | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| NlaIII | CATG | 9 cut(s) | 182, 590, 1219, 1739, 2056, 2068, 2161, 2236, 2416 |
| NlaIV | GGNNCC | 3 cut(s) | 327, 838, 2097 |
| NmuCI | GTSAC | 4 cut(s) | 311, 853, 1588, 2113 |
| NsiI | ATGCAT | 2 cut(s) | 1330, 1701 |
| NspI | RCATGY | 1 cut(s) | 1739 |
| PciI | ACATGT | 1 cut(s) | 1735 |
| PciSI | GCTCTTC | 1 cut(s) | 675 |
| PctI | GAATGC | 1 cut(s) | 1143 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1547, 1676 |
| PfeI | GAWTC | 6 cut(s) | 425, 482, 572, 592, 2332, 2338 |
| PflFI | GACNNNGTC | 1 cut(s) | 2423 |
| PkrI | GCNGC | 5 cut(s) | 306, 391, 1724, 1852, 1957 |
| PleI | GAGTC | 3 cut(s) | 364, 1743, 2222 |
| PpsI | GAGTC | 3 cut(s) | 364, 1743, 2222 |
| Ppu21I | YACGTR | 1 cut(s) | 1908 |
| PscI | ACATGT | 1 cut(s) | 1735 |
| PshBI | ATTAAT | 1 cut(s) | 1818 |
| PsiI | TTATAA | 4 cut(s) | 921, 1187, 1569, 1806 |
| PspN4I | GGNNCC | 3 cut(s) | 327, 838, 2097 |
| PspPI | GGNCC | 3 cut(s) | 243, 836, 1886 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1420, 1895 |
| PsuI | RGATCY | 2 cut(s) | 1152, 2095 |
| PsyI | GACNNNGTC | 1 cut(s) | 2423 |
| PvuII | CAGCTG | 1 cut(s) | 1958 |
| RsaI | GTAC | 4 cut(s) | 357, 1910, 2017, 2387 |
| RsaNI | GTAC | 4 cut(s) | 356, 1909, 2016, 2386 |
| RseI | CAYNNNNRTG | 5 cut(s) | 506, 1556, 1820, 2069, 2231 |
| SapI | GCTCTTC | 1 cut(s) | 675 |
| SatI | GCNGC | 5 cut(s) | 305, 390, 1723, 1851, 1956 |
| Sau3AI | GATC | 6 cut(s) | 433, 1152, 1350, 2095, 2439, 2464 |
| Sau96I | GGNCC | 3 cut(s) | 243, 836, 1886 |
| SchI | GAGTC | 3 cut(s) | 364, 1743, 2223 |
| ScrFI | CCNGG | 1 cut(s) | 258 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SfcI | CTRYAG | 2 cut(s) | 1513, 2292 |
| SinI | GGWCC | 2 cut(s) | 243, 836 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 506, 1556, 1820, 2069, 2231 |
| SnaBI | TACGTA | 1 cut(s) | 1908 |
| SsiI | CCGC | 3 cut(s) | 222, 714, 2086 |
| SspMI | CTAG | 6 cut(s) | 429, 479, 549, 974, 1394, 1760 |
| StyD4I | CCNGG | 1 cut(s) | 256 |
| TaaI | ACNGT | 6 cut(s) | 279, 636, 1023, 1283, 1600, 1992 |
| TaiI | ACGT | 4 cut(s) | 30, 1575, 1595, 1910 |
| TaqI | TCGA | 3 cut(s) | 23, 43, 1018 |
| TaqII | GACCGA | 1 cut(s) | 1226 |
| TatI | WGTACW | 1 cut(s) | 2015 |
| TfiI | GAWTC | 6 cut(s) | 425, 482, 572, 592, 2332, 2338 |
| TscAI | CASTG | 4 cut(s) | 641, 1125, 1997, 2449 |
| TseFI | GTSAC | 4 cut(s) | 311, 853, 1588, 2113 |
| TseI | GCWGC | 5 cut(s) | 304, 389, 1722, 1850, 1955 |
| Tsp45I | GTSAC | 4 cut(s) | 311, 853, 1588, 2113 |
| TspDTI | ATGAA | 8 cut(s) | 6, 490, 494, 698, 1380, 1540, 2174, 2273 |
| TspGWI | ACGGA | 3 cut(s) | 299, 1146, 2276 |
| TspRI | CASTG | 4 cut(s) | 641, 1125, 1997, 2449 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2423 |
| VpaK11BI | GGWCC | 2 cut(s) | 243, 836 |
| VspI | ATTAAT | 1 cut(s) | 1818 |
| XapI | RAATTY | 3 cut(s) | 1315, 1755, 2107 |
| XbaI | TCTAGA | 2 cut(s) | 548, 1759 |
| XceI | RCATGY | 1 cut(s) | 1739 |
| XmiI | GTMKAC | 2 cut(s) | 1128, 1595 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1547, 1676 |
| XspI | CTAG | 6 cut(s) | 429, 479, 549, 974, 1394, 1760 |
| Zsp2I | ATGCAT | 2 cut(s) | 1330, 1701 |