Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002525.1

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

67606 .. 69049

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002525.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtacgccaattcggtactcaatttaacatttctgctgtttttacagagaattttagtagctacggttcaaatttgagttatgttggtggttttctgattgagaatttttgccgaaatggggagttggattctgctgttgaggcattggtctgtatgtgtgcattgggtgcttcggtgcctcctttgatgtgtgttgcatgtagagaaaatcagagaggagcggaggatttctttgatgtgttactaagggttggtccggagccgaatgtggtgacttttagcaccatgattaacacgtacggtaaagatcggaggttggaagaggcaattaagctttatgaggttatgaaagagaagggtatcagtccggacttggttgtgtatagcattcttattgacagtctctttaaggcagggaagttggaggaggggcatcgacttttttctgttgcattagatagtgggattaagttggatgtagtcatcttcagttctgttatggatgcatatgtaagaactagaaatttggaaaagctagtggagatgtacagaaggatgtataacgaagggatctcacagaacactgttagttacagtccgcacgcctcctctacttcaccctcagcccaccacctcacttgccatgctcctgctgctcaccacaacgcaactagtattgctagccttcggaccgctcgtcccctcgcaccaagctgctgccctcggccttctacctttggcaacaactgcaaactctcctcttccatcgacgccaacttcttcaagctcccaagctttcaaacttcaaggtttcaatctccaattaatcaagatgccgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

281

Amino Acids

31.01

Weight (kDa)

6.65

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	2 cut(s)	224, 698
AccIII	TCCGGA	2 cut(s)	259, 370
AciI	CCGC	3 cut(s)	224, 602, 696
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	4 cut(s)	52, 73, 106, 526
AcuI	CTGAAG	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	774
AfaI	GTAC	4 cut(s)	6, 19, 302, 551
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	72, 787, 803, 810, 818
AhdI	GACNNNNNGTC	1 cut(s)	699
AhlI	ACTAGT	1 cut(s)	674
AluBI	AGCT	6 cut(s)	63, 337, 538, 717, 790, 798
AluI	AGCT	6 cut(s)	63, 337, 538, 717, 790, 798
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	581
Aor13HI	TCCGGA	2 cut(s)	259, 370
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	656, 717, 720
ApoI	RAATTY	4 cut(s)	52, 73, 106, 526
AseI	ATTAAT	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	257, 693
AsuHPI	GGTGA	3 cut(s)	286, 612, 653
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	257, 693
BanI	GGYRCC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	643, 704, 707
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	4 cut(s)	522, 539, 675, 684
BisI	GCNGC	3 cut(s)	657, 718, 721
BlsI	GCNGC	3 cut(s)	658, 719, 722
Bme18I	GGWCC	2 cut(s)	257, 693
BmeRI	GACNNNNNGTC	1 cut(s)	699
BmgT120I	GGNCC	2 cut(s)	257, 693
BmiI	GGNNCC	2 cut(s)	180, 264
BmsI	GCATC	3 cut(s)	445, 496, 826
BmtI	GCTAGC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	2 cut(s)	259, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseAI	TCCGGA	2 cut(s)	259, 370
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	3 cut(s)	484, 511, 564
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	4 cut(s)	234, 443, 601, 751
BseXI	GCAGC	3 cut(s)	643, 704, 707
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	260, 371
BsiWI	CGTACG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	730
Bsp13I	TCCGGA	2 cut(s)	259, 370
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	310, 573
BspACI	CCGC	3 cut(s)	224, 602, 696
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	1 cut(s)	638
BspEI	TCCGGA	2 cut(s)	259, 370
BspLI	GGNNCC	2 cut(s)	180, 264
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	178
BsrBI	CCGCTC	2 cut(s)	224, 698
BsrGI	TGTACA	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	2 cut(s)	310, 573
BssNI	GRCGYC	1 cut(s)	774
Bst4CI	ACNGT	5 cut(s)	68, 305, 404, 589, 599
Bst6I	CTCTTC	2 cut(s)	318, 769
BstACI	GRCGYC	1 cut(s)	774
BstAPI	GCANNNNNTGC	2 cut(s)	170, 750
BstAUI	TGTACA	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	606, 685
BstDEI	CTNAG	2 cut(s)	248, 625
BstF5I	GGATG	3 cut(s)	484, 511, 564
BstKTI	GATC	2 cut(s)	313, 576
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	310, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
BstNSI	RCATGY	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	643, 704, 707
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	484, 511, 564
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	606, 685
Cfr13I	GGNCC	2 cut(s)	257, 693
CpoI	CGGWCCG	1 cut(s)	693
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	4 cut(s)	5, 18, 301, 550
CspCI	CAANNNNNGTGG	2 cut(s)	623, 658
CspI	CGGWCCG	1 cut(s)	693
CviAII	CATG	3 cut(s)	201, 289, 647
CviQI	GTAC	4 cut(s)	5, 18, 301, 550
DdeI	CTNAG	2 cut(s)	248, 625
DpnI	GATC	2 cut(s)	312, 575
DpnII	GATC	2 cut(s)	310, 573
DriI	GACNNNNNGTC	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	318, 769
Eam1105I	GACNNNNNGTC	1 cut(s)	699
EarI	CTCTTC	2 cut(s)	318, 769
Eco47I	GGWCC	2 cut(s)	257, 693
Eco57I	CTGAAG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	3 cut(s)	204, 292, 650
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	3 cut(s)	200, 288, 646
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	657, 718, 721
FokI	GGATG	3 cut(s)	491, 518, 571
Fsp4HI	GCNGC	3 cut(s)	657, 718, 721
FspBI	CTAG	4 cut(s)	522, 539, 675, 684
GluI	GCNGC	3 cut(s)	657, 718, 721
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	2 cut(s)	260, 371
HgaI	GACGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	204, 292, 650
HindIII	AAGCTT	2 cut(s)	335, 796
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	260, 371
HphI	GGTGA	3 cut(s)	286, 612, 653
Hpy188I	TCNGA	4 cut(s)	99, 216, 315, 693
Hpy188III	TCNNGA	3 cut(s)	260, 371, 833
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	5 cut(s)	352, 549, 563, 698, 741
HpyCH4III	ACNGT	5 cut(s)	68, 305, 404, 589, 599
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	164, 200, 455, 509, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
HpyF3I	CTNAG	2 cut(s)	248, 625
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	774
Hsp92II	CATG	3 cut(s)	204, 292, 650
Kpn2I	TCCGGA	2 cut(s)	259, 370
Kzo9I	GATC	2 cut(s)	310, 573
LmnI	GCTCC	4 cut(s)	221, 262, 655, 795
LpnPI	CCDG	4 cut(s)	273, 384, 402, 666
Lsp1109I	GCAGC	3 cut(s)	643, 704, 707
LweI	GCATC	3 cut(s)	445, 496, 826
MaeI	CTAG	4 cut(s)	522, 539, 675, 684
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	243, 274, 593
MalI	GATC	2 cut(s)	312, 575
MbiI	CCGCTC	2 cut(s)	224, 698
MboI	GATC	2 cut(s)	310, 573
MboII	GAAGA	4 cut(s)	335, 481, 756, 775
MflI	RGATCY	1 cut(s)	573
MluCI	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
MmeI	TCCRAC	4 cut(s)	108, 300, 405, 456
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	2 cut(s)	259, 370
MseI	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
MspI	CCGG	2 cut(s)	260, 371
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	310, 573
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	3 cut(s)	204, 292, 650
NlaIV	GGNNCC	2 cut(s)	180, 264
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PctI	GAATGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	658, 719, 722
Ppu21I	YACGTR	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	828
PspLI	CGTACG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	180, 264
PspPI	GGNCC	2 cut(s)	257, 693
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	4 cut(s)	6, 19, 302, 551
RsaNI	GTAC	4 cut(s)	5, 18, 301, 550
Rsr2I	CGGWCCG	1 cut(s)	693
RsrII	CGGWCCG	1 cut(s)	693
SaqAI	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
SatI	GCNGC	3 cut(s)	657, 718, 721
Sau3AI	GATC	2 cut(s)	310, 573
Sau96I	GGNCC	2 cut(s)	257, 693
SfaNI	GCATC	3 cut(s)	445, 496, 826
SinI	GGWCC	2 cut(s)	257, 693
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
SsiI	CCGC	3 cut(s)	224, 602, 696
SspMI	CTAG	4 cut(s)	522, 539, 675, 684
TaaI	ACNGT	5 cut(s)	68, 305, 404, 589, 599
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	439, 771
TasI	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
Tru9I	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	656, 717, 720
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	257, 693
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	4 cut(s)	52, 73, 106, 526
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	4 cut(s)	522, 539, 675, 684
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.