Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Reverse (-)

17928385 .. 17931863

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGGTACGCCAATTCGGTACTCAATTTAACATTTCTGCTGTTTTTACAGAGAATTTTAGTAGCTACGGTTCAAATTTGAGTTATGTTGGTGGTTTTCTGATTGAGAATTTTTGCCGAAATGGGGAGTTGGACCCTGCTGTTGAGGCATTGGTTTGTATGTGTGCGTTGGGTGCTTCGGTGCCGCCTTTTGCTGTGTGTAGAATTTTGAGTGCTTGTGTTGATACGAATCGTTTACATGTGATTCTTGATATATATGGAAAATTGTGTGGACAAGGTTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTTGGGCAAAGGTGAAGTTGAAATGGGATTGAATTTTCATTCGGCAGTGATGGATAGAGGCTTTGTGCTTGATGTAGTTGCTTGTAACAAGATTTTGAAGCTTCTTTGTAGAGAAAATCAGAAAGGAGCGGAGGATTTCTTTGATGTGTTACTAAGGGTTGGTCCAGAGACGAATGTGGTGACTTTTAGCACCATGATTAACACGTACTGTAAGGATCGGAGGTTGGAAGAGGCAATTAAGCTTTATGAGGTTATGAAAGAGAAGGGTATCAGTCCGGACTTGGTTGTGTATAGTATTCTTATTGACGGTCTCTTTAAGGCAGGGAAGTTGGAGGAGGGGCATCGACTTTTTTCAGTTGCATTAGATAGTGGGATTAAGTTGGATGTAGTCATCTTGAGTTCTGTTATGGATGCATATGTAAGAACTAGAAATTTGGAAAAGCTCGTGGAGGTGTACAGAAGGATGTATAACGAAGGGATATCACAGAACACTGTTAGTTACAGTGTTCTTATAAACGGCTTGTGTCAGAATGGAAGGATAATGGAGGCTTGTGGGATATTTGGTCAGATTGTGAAGCATGGTTTTGTGCCGTCCATTCTAACTTATAGTAGTTTGATTGATGGAATATGCAAACTGGGGAATTTAAAAGATGCATTTAACCTGTATGAGAGTATGGTCAAGACTGGTTATGAACCAGATATTATTCTTTATGGTGTGCTATTAAATGGCCTTTGCAAGCATGGACTGATGAGTGACGCTCTTAGGTTCTTCTTTCAGGTTATTAATAGAGGTGTAAAGCCAAATGTTTATACTTTTAATATGTTGATCGATGGCTTCTGTAGATTGAATAGATTAAAAAATGCTGTGAAGGTGTACAACCAAATGCGAATGTATAACATAAGACCAGATGTGGTGACATATACTGTGCTTATTCAAGGCATTTCTGAATTGGGGAGACTAAATGATGCATTAGTGTTTTTCTTCCAATCATTGAAGAGGGGTTTCTTGCCTGATGTTGTAACATATTGCACCCTCATTGATGCTTGCTGCAAGCAGAAATATGTATATGCTGGATTCCGGATTTTTGAGATGATGCTAACAAATCGAGTCAATCCTGATATTACCATTTATAATGTTCTCATTAATATGCTTTTCAAAGAAGGTTATTTAGAAGCTGCACAGACACTCTTTGAACAACTTACTGAAAGAGGGCTACGACCTGATATGGTTACATACAATACAATGGTTTGTGGTTATTGTTCTCTGAGAAGGTTAGATGAAGCTGTTCACCTTTTTCAACAAATGACACAGGGACAGTGTAAACCCAATGCCATCACTTGTAGTATATTGATCGATGCTTTCTGTAAAGAAGGTAACATGGACGATGCAGTGTTATTGTTTGATCAAATGCAGGAAAAGGATCCTGAACCTAATGTGGTCACCTATAGTTGTCTGATTGATGGTTATTTTAAATCTGAAAACATGGAAAGTGCCTTTGAACTATATGAAGAGATGCTTCAGAGTATCTCTCCAAATATAGTTAGTTACAGCATCCTCATTGATGGTCTTTGCAAAAGAGGACTGATGAAGAAAGCAGCCCTTGCATTTCATTCTGCTATAAACAGGGGTCTGGTGCCGGATGTAGTAGCATATGGGATCCTGATTCATGGTTACTGCAAGGTTGGAAGAACGGCAGATGCCATGGCATTGTACGGTCGTATGTTAATAAGTGGAATCATGCCGGATGCTATCATACAAAGGATGATTGCGAAGCACCTTCTTGAAATTCGGTCCCACCAAAATATGAGCGGCCAACCAGATGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

712

Amino Acids

80.08

Weight (kDa)

6.26

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 174	8.7e-08	PPR repeat family
TPR_24	PF23276	146 - 257	3.3e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	157 - 204	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	161 - 209	1.7e-17	PPR repeat family
PPR_1	PF12854	161 - 189	1.7e-09	PPR repeat
PPR	PF01535	163 - 193	1.3e-08	PPR repeat
PPR_1	PF12854	191 - 221	1.2e-07	PPR repeat
PPR_3	PF13812	225 - 275	6.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	231 - 279	9.7e-10	PPR repeat family
PPR_1	PF12854	262 - 292	1e-07	PPR repeat
PPR_2	PF13041	266 - 314	4e-13	PPR repeat family
PPR	PF01535	268 - 298	2.5e-06	PPR repeat
PPR_3	PF13812	289 - 345	2.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 329	4.7e-09	PPR repeat
PPR_2	PF13041	307 - 349	1.5e-10	PPR repeat family
PPR_1	PF12854	332 - 360	1.3e-06	PPR repeat
PPR_2	PF13041	335 - 384	1.3e-14	PPR repeat family
PPR_3	PF13812	364 - 416	1.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 399	3e-13	PPR repeat
PPR_2	PF13041	374 - 417	2.2e-14	PPR repeat family
PPR_2	PF13041	405 - 454	3e-13	PPR repeat family
PPR_3	PF13812	436 - 487	2.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	436 - 468	2e-06	PPR repeat
PPR_2	PF13041	440 - 477	8.6e-07	PPR repeat family
PPR_long	PF17177	453 - 562	5.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	475 - 523	3.5e-14	PPR repeat family
PPR_3	PF13812	499 - 559	6.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	506 - 539	7.4e-12	PPR repeat
PPR_2	PF13041	510 - 559	2.7e-17	PPR repeat family
PPR	PF01535	513 - 540	3.3e-07	PPR repeat
PPR_long	PF17177	529 - 623	8.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	543 - 574	4.1e-11	PPR repeat
PPR	PF01535	548 - 576	2.5e-07	PPR repeat
PPR_2	PF13041	552 - 594	2.8e-13	PPR repeat family
PPR_3	PF13812	569 - 624	5.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	579 - 608	8.9e-10	PPR repeat
PPR_2	PF13041	580 - 628	1.1e-17	PPR repeat family
PPR	PF01535	583 - 610	5.6e-07	PPR repeat
PPR_1	PF12854	612 - 635	6.7e-08	PPR repeat
PPR_1	PF12854	645 - 677	3.3e-10	PPR repeat
PPR_2	PF13041	649 - 686	1.6e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	821, 1440
AccB1I	GGYRCC	2 cut(s)	178, 1942
AccBSI	CCGCTC	2 cut(s)	437, 2118
AccIII	TCCGGA	2 cut(s)	583, 1386
AciI	CCGC	3 cut(s)	182, 437, 2118
AclWI	GGATC	5 cut(s)	531, 1724, 1737, 1960, 1973
AcoI	YGGCCR	1 cut(s)	2119
AcsI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 2094
AcuI	CTGAAG	1 cut(s)	1811
AfaI	GTAC	6 cut(s)	6, 19, 515, 764, 1184, 2021
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	2 cut(s)	235, 510
AjuI	GAANNNNNNNTTGG	1 cut(s)	2115
AluBI	AGCT	6 cut(s)	63, 409, 550, 751, 1484, 1592
AluI	AGCT	6 cut(s)	63, 409, 550, 751, 1484, 1592
Alw26I	GTCTC	3 cut(s)	470, 623, 1258
AlwI	GGATC	5 cut(s)	531, 1724, 1737, 1960, 1973
Aor13HI	TCCGGA	2 cut(s)	583, 1386
AoxI	GGCC	2 cut(s)	1036, 2119
ApeKI	GCWGC	3 cut(s)	1356, 1484, 1904
ApoI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 2094
AseI	ATTAAT	2 cut(s)	1092, 1452
Asp700I	GAANNNNTTC	1 cut(s)	1593
AspS9I	GGNCC	3 cut(s)	130, 470, 2100
AsuHPI	GGTGA	5 cut(s)	332, 499, 1234, 1589, 1741
AvaII	GGWCC	3 cut(s)	130, 470, 2100
BamHI	GGATCC	2 cut(s)	1729, 1965
BanI	GGYRCC	2 cut(s)	178, 1942
BauI	CACGAG	1 cut(s)	752
BbvI	GCAGC	3 cut(s)	1343, 1471, 1916
BccI	CCATC	6 cut(s)	352, 923, 1133, 1649, 1763, 1865
BceAI	ACGGC	3 cut(s)	841, 883, 2016
BclI	TGATCA	1 cut(s)	1711
BcoDI	GTCTC	3 cut(s)	470, 623, 1258
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	2 cut(s)	1147, 1753
BisI	GCNGC	5 cut(s)	182, 1357, 1485, 1905, 2119
BlsI	GCNGC	5 cut(s)	183, 1358, 1486, 1906, 2120
Bme18I	GGWCC	3 cut(s)	130, 470, 2100
BmgT120I	GGNCC	3 cut(s)	130, 470, 2100
BmiI	GGNNCC	6 cut(s)	132, 180, 1731, 1944, 1967, 2102
BmrI	ACTGGG	1 cut(s)	953
BmuI	ACTGGG	1 cut(s)	953
BplI	GAGNNNNNCTC	4 cut(s)	1051, 1083, 1822, 1854
BpuEI	CTTGAG	1 cut(s)	724
Bsa29I	ATCGAT	2 cut(s)	1137, 1662
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	2010
BsaWI	WCCGGW	2 cut(s)	583, 1386
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	948, 997
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	2 cut(s)	583, 1386
BseCI	ATCGAT	2 cut(s)	1137, 1662
BseDI	CCNNGG	1 cut(s)	2010
BseGI	GGATG	7 cut(s)	697, 724, 777, 1860, 1954, 2059, 2076
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	1565
BseNI	ACTGG	2 cut(s)	948, 997
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	1343, 1471, 1916
BsgI	GTGCAG	1 cut(s)	1470
Bsh1285I	CGRYCG	1 cut(s)	2026
BshFI	GGCC	2 cut(s)	1038, 2121
BshNI	GGYRCC	2 cut(s)	178, 1942
BshVI	ATCGAT	2 cut(s)	1137, 1662
BsiEI	CGRYCG	1 cut(s)	2026
BsiSI	CCGG	4 cut(s)	584, 1387, 1946, 2051
BslFI	GGGAC	2 cut(s)	1635, 2086
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	3 cut(s)	470, 623, 1258
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	2 cut(s)	1635, 2086
BsnI	GGCC	2 cut(s)	1038, 2121
Bso31I	GGTCTC	1 cut(s)	623
Bsp13I	TCCGGA	2 cut(s)	583, 1386
Bsp1407I	TGTACA	2 cut(s)	762, 1182
Bsp143I	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
Bsp19I	CCATGG	1 cut(s)	2010
BspACI	CCGC	3 cut(s)	182, 437, 2118
BspANI	GGCC	2 cut(s)	1038, 2121
BspCNI	CTCAG	1 cut(s)	1566
BspDI	ATCGAT	2 cut(s)	1137, 1662
BspEI	TCCGGA	2 cut(s)	583, 1386
BspLI	GGNNCC	6 cut(s)	132, 180, 1731, 1944, 1967, 2102
BspPI	GGATC	5 cut(s)	531, 1724, 1737, 1960, 1973
BspT107I	GGYRCC	2 cut(s)	178, 1942
BspTNI	GGTCTC	1 cut(s)	623
BsrBI	CCGCTC	2 cut(s)	437, 2118
BsrGI	TGTACA	2 cut(s)	762, 1182
BsrI	ACTGG	2 cut(s)	948, 997
BssECI	CCNNGG	1 cut(s)	2010
BssMI	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
BssSI	CACGAG	1 cut(s)	752
BssT1I	CCWWGG	1 cut(s)	2010
Bst2BI	CACGAG	1 cut(s)	752
Bst4CI	ACNGT	8 cut(s)	68, 518, 617, 802, 812, 1234, 1626, 2024
Bst6I	CTCTTC	3 cut(s)	531, 1298, 1812
BstAPI	GCANNNNNTGC	1 cut(s)	1910
BstAUI	TGTACA	2 cut(s)	762, 1182
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	1046, 1354, 1361
BstDEI	CTNAG	3 cut(s)	461, 1070, 1574
BstDSI	CCRYGG	1 cut(s)	2010
BstEII	GGTNACC	1 cut(s)	1747
BstF5I	GGATG	7 cut(s)	697, 724, 777, 1860, 1954, 2059, 2076
BstKTI	GATC	6 cut(s)	526, 1137, 1662, 1714, 1732, 1968
BstMAI	GTCTC	3 cut(s)	470, 623, 1258
BstMBI	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
BstMCI	CGRYCG	1 cut(s)	2026
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 170, 1910
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	1747
BstSFI	CTRYAG	2 cut(s)	1147, 1753
BstV1I	GCAGC	3 cut(s)	1343, 1471, 1916
BstX2I	RGATCY	2 cut(s)	1729, 1965
BstYI	RGATCY	2 cut(s)	1729, 1965
Bsu15I	ATCGAT	2 cut(s)	1137, 1662
BsuRI	GGCC	2 cut(s)	1038, 2121
BsuTUI	ATCGAT	2 cut(s)	1137, 1662
BtgI	CCRYGG	1 cut(s)	2010
BtsCI	GGATG	7 cut(s)	697, 724, 777, 1860, 1954, 2059, 2076
BtsI	GCAGTG	2 cut(s)	360, 1704
BtsIMutI	CAGTG	5 cut(s)	360, 798, 817, 1631, 1704
Cac8I	GCNNGC	3 cut(s)	1046, 1354, 1361
Cfr13I	GGNCC	3 cut(s)	130, 470, 2100
ClaI	ATCGAT	2 cut(s)	1137, 1662
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	6 cut(s)	5, 18, 514, 763, 1183, 2020
CviAII	CATG	9 cut(s)	236, 502, 887, 1049, 1687, 1792, 1976, 2011, 2047
CviQI	GTAC	6 cut(s)	5, 18, 514, 763, 1183, 2020
DdeI	CTNAG	3 cut(s)	461, 1070, 1574
DpnI	GATC	6 cut(s)	525, 1136, 1661, 1713, 1731, 1967
DpnII	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
DraI	TTTAAA	2 cut(s)	954, 1780
EaeI	YGGCCR	1 cut(s)	2119
Eam1104I	CTCTTC	3 cut(s)	531, 1298, 1812
EarI	CTCTTC	3 cut(s)	531, 1298, 1812
Eco130I	CCWWGG	1 cut(s)	2010
Eco31I	GGTCTC	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	789
Eco47I	GGWCC	3 cut(s)	130, 470, 2100
Eco57I	CTGAAG	1 cut(s)	1811
Eco91I	GGTNACC	1 cut(s)	1747
EcoO65I	GGTNACC	1 cut(s)	1747
EcoRV	GATATC	1 cut(s)	789
EcoT14I	CCWWGG	1 cut(s)	2010
EcoT22I	ATGCAT	3 cut(s)	724, 964, 1279
ErhI	CCWWGG	1 cut(s)	2010
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	9 cut(s)	239, 505, 890, 1052, 1690, 1795, 1979, 2014, 2050
FalI	AAGNNNNNCTT	4 cut(s)	1809, 1841, 1893, 1925
FaqI	GGGAC	2 cut(s)	1635, 2086
FatI	CATG	9 cut(s)	235, 501, 886, 1048, 1686, 1791, 1975, 2010, 2046
FauNDI	CATATG	2 cut(s)	724, 1960
FbaI	TGATCA	1 cut(s)	1711
Fnu4HI	GCNGC	5 cut(s)	182, 1357, 1485, 1905, 2119
FokI	GGATG	7 cut(s)	704, 731, 784, 1847, 1961, 2066, 2083
Fsp4HI	GCNGC	5 cut(s)	182, 1357, 1485, 1905, 2119
FspBI	CTAG	1 cut(s)	735
GluI	GCNGC	5 cut(s)	182, 1357, 1485, 1905, 2119
HaeIII	GGCC	2 cut(s)	1038, 2121
HapII	CCGG	4 cut(s)	584, 1387, 1946, 2051
HgaI	GACGC	1 cut(s)	1073
Hin1II	CATG	9 cut(s)	239, 505, 890, 1052, 1690, 1795, 1979, 2014, 2050
HindIII	AAGCTT	2 cut(s)	407, 548
HinfI	GANTC	6 cut(s)	226, 241, 1383, 1416, 1972, 2043
HpaII	CCGG	4 cut(s)	584, 1387, 1946, 2051
HphI	GGTGA	5 cut(s)	332, 499, 1234, 1589, 1741
Hpy166II	GTNNAC	7 cut(s)	233, 269, 286, 763, 1183, 1597, 1631
Hpy8I	GTNNAC	7 cut(s)	233, 269, 286, 763, 1183, 1597, 1631
HpyAV	CCTTC	9 cut(s)	565, 762, 776, 837, 1171, 1463, 1572, 1673, 2096
HpyCH4III	ACNGT	8 cut(s)	68, 518, 617, 802, 812, 1234, 1626, 2024
HpyCH4IV	ACGT	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 170, 1910
HpyF3I	CTNAG	3 cut(s)	461, 1070, 1574
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	9 cut(s)	239, 505, 890, 1052, 1690, 1795, 1979, 2014, 2050
Kpn2I	TCCGGA	2 cut(s)	583, 1386
Ksp22I	TGATCA	1 cut(s)	1711
Kzo9I	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	3 cut(s)	1343, 1471, 1916
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	512
MalI	GATC	6 cut(s)	525, 1136, 1661, 1713, 1731, 1967
MbiI	CCGCTC	2 cut(s)	437, 2118
MboI	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
MboII	GAAGA	7 cut(s)	548, 1069, 1282, 1315, 1829, 1909, 2007
MflI	RGATCY	2 cut(s)	1729, 1965
MlyI	GAGTC	1 cut(s)	1425
MmeI	TCCRAC	5 cut(s)	108, 513, 618, 669, 1972
Mph1103I	ATGCAT	3 cut(s)	724, 964, 1279
MroI	TCCGGA	2 cut(s)	583, 1386
MroXI	GAANNNNTTC	1 cut(s)	1593
MslI	CAYNNNNRTG	1 cut(s)	1454
MspI	CCGG	4 cut(s)	584, 1387, 1946, 2051
MwoI	GCNNNNNNNGC	3 cut(s)	143, 170, 1910
NcoI	CCATGG	1 cut(s)	2010
NdeI	CATATG	2 cut(s)	724, 1960
NdeII	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
NlaIII	CATG	9 cut(s)	239, 505, 890, 1052, 1690, 1795, 1979, 2014, 2050
NlaIV	GGNNCC	6 cut(s)	132, 180, 1731, 1944, 1967, 2102
NmuCI	GTSAC	4 cut(s)	487, 1061, 1222, 1747
NsiI	ATGCAT	3 cut(s)	724, 964, 1279
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	1593
PfeI	GAWTC	5 cut(s)	226, 241, 1383, 1972, 2043
PkrI	GCNGC	5 cut(s)	183, 1358, 1486, 1906, 2120
PleI	GAGTC	1 cut(s)	1424
PpsI	GAGTC	1 cut(s)	1424
Ppu21I	YACGTR	1 cut(s)	513
PscI	ACATGT	1 cut(s)	235
PshBI	ATTAAT	2 cut(s)	1092, 1452
PsiI	TTATAA	2 cut(s)	821, 1440
PspEI	GGTNACC	1 cut(s)	1747
PspN4I	GGNNCC	6 cut(s)	132, 180, 1731, 1944, 1967, 2102
PspPI	GGNCC	3 cut(s)	130, 470, 2100
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	2 cut(s)	1729, 1965
RsaI	GTAC	6 cut(s)	6, 19, 515, 764, 1184, 2021
RsaNI	GTAC	6 cut(s)	5, 18, 514, 763, 1183, 2020
RseI	CAYNNNNRTG	1 cut(s)	1454
SatI	GCNGC	5 cut(s)	182, 1357, 1485, 1905, 2119
Sau3AI	GATC	6 cut(s)	523, 1134, 1659, 1711, 1729, 1965
Sau96I	GGNCC	3 cut(s)	130, 470, 2100
SchI	GAGTC	1 cut(s)	1425
SfcI	CTRYAG	2 cut(s)	1147, 1753
SinI	GGWCC	3 cut(s)	130, 470, 2100
SmiMI	CAYNNNNRTG	1 cut(s)	1454
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SsiI	CCGC	3 cut(s)	182, 437, 2118
SspMI	CTAG	1 cut(s)	735
StyI	CCWWGG	1 cut(s)	2010
TaaI	ACNGT	8 cut(s)	68, 518, 617, 802, 812, 1234, 1626, 2024
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	4 cut(s)	652, 1137, 1414, 1662
TaqII	GACCGA	1 cut(s)	2088
TatI	WGTACW	2 cut(s)	762, 1182
TauI	GCSGC	2 cut(s)	184, 2121
TfiI	GAWTC	5 cut(s)	226, 241, 1383, 1972, 2043
TscAI	CASTG	5 cut(s)	360, 805, 817, 1631, 1704
TseFI	GTSAC	4 cut(s)	487, 1061, 1222, 1747
TseI	GCWGC	3 cut(s)	1356, 1484, 1904
Tsp45I	GTSAC	4 cut(s)	487, 1061, 1222, 1747
TspDTI	ATGAA	8 cut(s)	335, 578, 1014, 1602, 1830, 1907, 1910, 1964
TspRI	CASTG	5 cut(s)	360, 805, 817, 1631, 1704
VpaK11BI	GGWCC	3 cut(s)	130, 470, 2100
VspI	ATTAAT	2 cut(s)	1092, 1452
XapI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 2094
XceI	RCATGY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	1593
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	3 cut(s)	724, 964, 1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.