Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

52679128 .. 52680258

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAAAATTGTGTGGACAAAGCTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTCATTCAGCATTGATGGATAGAGGTTTTGTGCTTGATGCAGTTGCTTGTAACAAGATTTTGAAGCTTCTTTGTAGAGAAAATCAGAGAGGAGCGGAGGATTTCTTTGATGTGTTACTAAGGGTTGGTCCAGAGCTGAATGTGGGGACTTTTAGCACCATGATTAGTACGTACTGTAAGGATAAAAAATTGGAAGAGGTAATTAAGCTTTATGAGGTTATGAAGGAGAAGGGAATCAGTCCGGACTTGGTTGTGTATAGTATTCTTATTGACAGTCTCTTTGAGGCAGGGAAGTTGGAGGAGGGGCATCGACTTTTTTCAGTTGCATTAGATAGTGGGATTAAGTTGGATGTAGTCATCTTCAGTTCTGTTACGCATGCATATGTAAGAACTAGAAATTTGGAAAAGCTAGTGGAGGTGTACAGAAGGATGTATAACGAAGGGATCTCGCAGAACACTGTTAGTTACAGTGTTCTTATAAACGGCTTGTGTCAGAATGGAAGGATAATGGAGGCTTGTGGGATATTCGGTCAGATTGTGAAGCATGGTTTTGTGCCTTCCATTCTAACTTATAGTAGTTTGATTGATGGAATATGCGGACTGGGGAATTTAAAAGATGCATTTAACCTGTATGAGAGTATGGTCAAGACTGGTTATGAACCTGATATTAGTCTTTATGGTGTGCTATTAAATGGCCTTTGCAAGCATGGACTGATGGGTGATGCTTTTAGGTTCTTCTTTCAGGTTATTATTAATAGGGGTGTAAAGCCAAATGTTTATACTTATAATATGTTGATAGATGGCTTCTGTGGATTGAATAGATTAAAAAATGCTGTGAAGGTGTACAACCAAATGCAATTGTATAACATAAGACCAGATGTGGTGACATATACTGTGCTTATTCGAGGCATTTCTGAATTGGGGAAATTGAATAATGCATTAGTGTTTTTCTTCCAATCATTGGAGAGGGGTTTCTTGCCCGATGTTGTAACATATTGCACCCTCATTGATGCTTGCTGCAAGCAGAAAAATGTATATGCTGGATTCCGGATTTTTGTGTTGATGCTAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

376

Amino Acids

42.33

Weight (kDa)

7.87

Isoelectric Point (pI)

15.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	31 - 78	5.1e-06	PPR repeat family
TPR_24	PF23276	50 - 161	1.7e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	61 - 109	5.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	65 - 111	2.5e-14	PPR repeat family
PPR	PF01535	68 - 97	2.1e-07	PPR repeat
PPR_1	PF12854	95 - 125	2.5e-06	PPR repeat
PPR_3	PF13812	129 - 179	2.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	135 - 183	4.4e-09	PPR repeat family
PPR_1	PF12854	166 - 196	4.8e-08	PPR repeat
PPR_2	PF13041	170 - 217	5.8e-13	PPR repeat family
PPR	PF01535	172 - 202	1.1e-06	PPR repeat
PPR_1	PF12854	201 - 233	1.6e-07	PPR repeat
PPR_2	PF13041	204 - 253	1.9e-12	PPR repeat family
PPR_1	PF12854	236 - 264	1.2e-06	PPR repeat
PPR_2	PF13041	239 - 288	2.8e-13	PPR repeat family
PPR_3	PF13812	270 - 320	5.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	271 - 304	4.2e-12	PPR repeat
PPR_2	PF13041	275 - 322	5.1e-17	PPR repeat family
PPR_2	PF13041	318 - 359	5.5e-07	PPR repeat family
PPR_1	PF12854	341 - 371	1.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	533, 840
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	149
AccIII	TCCGGA	2 cut(s)	295, 1101
AciI	CCGC	2 cut(s)	149, 651
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	2 cut(s)	451, 661
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	4 cut(s)	223, 227, 476, 899
AfiI	CCNNNNNNNGG	1 cut(s)	1015
AgsI	TTSAA	3 cut(s)	118, 871, 985
AluBI	AGCT	5 cut(s)	23, 121, 190, 262, 463
AluI	AGCT	5 cut(s)	23, 121, 190, 262, 463
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	506
Aor13HI	TCCGGA	2 cut(s)	295, 1101
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	1 cut(s)	1071
ApoI	RAATTY	2 cut(s)	451, 661
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AseI	ATTAAT	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	785, 949
AvaII	GGWCC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	1058
BccI	CCATC	4 cut(s)	64, 635, 763, 848
BceAI	ACGGC	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	447, 464
BisI	GCNGC	1 cut(s)	1072
BlsI	GCNGC	1 cut(s)	1073
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	6 cut(s)	82, 370, 661, 766, 1054, 1107
BmuI	ACTGGG	1 cut(s)	665
BsaAI	YACGTR	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	295, 1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	1015
Bse1I	ACTGG	2 cut(s)	660, 709
BseAI	TCCGGA	2 cut(s)	295, 1101
BseGI	GGATG	2 cut(s)	409, 489
BseLI	CCNNNNNNNGG	1 cut(s)	1015
BseNI	ACTGG	2 cut(s)	660, 709
BseRI	GAGGAG	2 cut(s)	159, 368
BseXI	GCAGC	1 cut(s)	1058
BshFI	GGCC	1 cut(s)	750
BsiSI	CCGG	2 cut(s)	296, 1102
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	1015
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	750
Bsp13I	TCCGGA	2 cut(s)	295, 1101
Bsp1407I	TGTACA	2 cut(s)	474, 897
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	149, 651
BspANI	GGCC	1 cut(s)	750
BspEI	TCCGGA	2 cut(s)	295, 1101
BspPI	GGATC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	149
BsrGI	TGTACA	2 cut(s)	474, 897
BsrI	ACTGG	2 cut(s)	660, 709
BssMI	GATC	1 cut(s)	498
Bst4CI	ACNGT	5 cut(s)	230, 329, 514, 524, 949
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	2 cut(s)	474, 897
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	4 cut(s)	432, 758, 1069, 1076
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	409, 489
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	434
BstSNI	TACGTA	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	1058
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	409, 489
BtsIMutI	CAGTG	2 cut(s)	510, 529
Cac8I	GCNNGC	4 cut(s)	432, 758, 1069, 1076
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	222, 226, 475, 898
CviAII	CATG	4 cut(s)	214, 431, 599, 761
CviQI	GTAC	4 cut(s)	222, 226, 475, 898
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
DraI	TTTAAA	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	400
EcoT22I	ATGCAT	3 cut(s)	436, 676, 994
FaeI	CATG	4 cut(s)	217, 434, 602, 764
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	213, 430, 598, 760
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	1072
FokI	GGATG	2 cut(s)	416, 496
Fsp4HI	GCNGC	1 cut(s)	1072
FspBI	CTAG	2 cut(s)	447, 464
GluI	GCNGC	1 cut(s)	1072
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	2 cut(s)	296, 1102
Hin1II	CATG	4 cut(s)	217, 434, 602, 764
HindIII	AAGCTT	3 cut(s)	21, 119, 260
HinfI	GANTC	2 cut(s)	288, 1098
HpaII	CCGG	2 cut(s)	296, 1102
HphI	GGTGA	2 cut(s)	785, 949
Hpy166II	GTNNAC	4 cut(s)	16, 33, 475, 898
Hpy188I	TCNGA	4 cut(s)	141, 549, 588, 970
Hpy188III	TCNNGA	4 cut(s)	185, 296, 700, 1102
Hpy8I	GTNNAC	4 cut(s)	16, 33, 475, 898
HpyAV	CCTTC	7 cut(s)	271, 277, 474, 488, 549, 621, 886
HpyCH4III	ACNGT	5 cut(s)	230, 329, 514, 524, 949
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	9 cut(s)	95, 380, 434, 674, 756, 910, 992, 1053, 1074
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	4 cut(s)	217, 434, 602, 764
Kpn2I	TCCGGA	2 cut(s)	295, 1101
Kzo9I	GATC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	1058
LweI	GCATC	6 cut(s)	82, 370, 661, 766, 1054, 1107
MaeI	CTAG	2 cut(s)	447, 464
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	6 cut(s)	104, 168, 424, 518, 937, 1042
MalI	GATC	1 cut(s)	500
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	498
MboII	GAAGA	4 cut(s)	260, 406, 781, 997
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	9 cut(s)	7, 242, 255, 451, 661, 911, 971, 980, 1126
MmeI	TCCRAC	2 cut(s)	330, 381
Mph1103I	ATGCAT	3 cut(s)	436, 676, 994
MroI	TCCGGA	2 cut(s)	295, 1101
MseI	TTAA	7 cut(s)	258, 396, 665, 678, 743, 807, 878
MslI	CAYNNNNRTG	1 cut(s)	435
MspI	CCGG	2 cut(s)	296, 1102
MunI	CAATTG	1 cut(s)	911
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	4 cut(s)	217, 434, 602, 764
NmuCI	GTSAC	1 cut(s)	937
NsiI	ATGCAT	3 cut(s)	436, 676, 994
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	288, 1098
PflMI	CCANNNNNTGG	1 cut(s)	1015
PkrI	GCNGC	1 cut(s)	1073
Ppu21I	YACGTR	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	807
PsiI	TTATAA	2 cut(s)	533, 840
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	4 cut(s)	223, 227, 476, 899
RsaNI	GTAC	4 cut(s)	222, 226, 475, 898
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	7 cut(s)	258, 396, 665, 678, 743, 807, 878
SatI	GCNGC	1 cut(s)	1072
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	182
SfaNI	GCATC	6 cut(s)	82, 370, 661, 766, 1054, 1107
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	435
SnaBI	TACGTA	1 cut(s)	225
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	9 cut(s)	7, 242, 255, 451, 661, 911, 971, 980, 1126
SsiI	CCGC	2 cut(s)	149, 651
SspMI	CTAG	2 cut(s)	447, 464
TaaI	ACNGT	5 cut(s)	230, 329, 514, 524, 949
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	364, 958
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	9 cut(s)	7, 242, 255, 451, 661, 911, 971, 980, 1126
TatI	WGTACW	2 cut(s)	474, 897
TfiI	GAWTC	2 cut(s)	288, 1098
Tru1I	TTAA	7 cut(s)	258, 396, 665, 678, 743, 807, 878
Tru9I	TTAA	7 cut(s)	258, 396, 665, 678, 743, 807, 878
TscAI	CASTG	2 cut(s)	517, 529
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	1 cut(s)	1071
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	3 cut(s)	47, 290, 726
TspRI	CASTG	2 cut(s)	517, 529
Van91I	CCANNNNNTGG	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	2 cut(s)	451, 661
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	2 cut(s)	447, 464
Zsp2I	ATGCAT	3 cut(s)	436, 676, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.