Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

53174101 .. 53176239

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG388700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGTACGCCAATTCGGTACTCAATTTAACATTTCTGCTGCTTTTACAGAGAATTTTAGTAGCTACGGTTCAAATTTGAGTTATGTTGGTGGTTTTCTGATTGAGAATTTTTGCCGAAATGGGGAGTTGGATTCTGCTGTTGAGGCATTGGTTTGTATGTGTGCATTGGGTGCTTCGGTGCCGCCTTTTTCTGTGTGTAGAATTTTGAGTGCTTGTGTTGATACGAATCGTGTACATGTGATTCTTGATATATATGGAAAATTGTGTGGACAAGGCTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTTGGGCAATGGTGAAGTTGAAATGGGATTGAATTTTCATTCAGCAGTGATGGATAGAGGTTTTGTGCTTGATGTAGTTGCTTGTAACAAGATTTTGAAGCTTCTTTGTAGAGAAAATCAGAAAGGAGCGGAGGATTTCTTTGATGTGTTACTAAGGGTTGGTCCGGAGCCAAATGTGGTGACTTTTAGCACCATGATTAACACGTACTGTAAGGATCGGAGGTTGGAAGAGGCAATTAAGCTTTATGAGGTTATGAAAGAGAAGGGTATCAGTCCGGACTTGGTTGTGTATAGCATTCTTATTGACGGTCTCTTTAAGGCAGGGAAGTTGGAGGAGGGGCATCGACTTCTTTCTGTTGCATTGGATAGTGGGATTAAGTTGGATGTAGTCATCTTCAGTTCTGTTATGGATGCATATGTAAGAACTAGAAATTTGGAAAAGCTAGTGGAGGTGTACAGAAGGATGTATAACGAAGGGATCTCGCAGAACACTGTTAGTTACAGTGTTCTTATAAACGGCTTGTGCCAGAATGGAAGGATAATGGAGGCTTGTGGGATATTCGGTCAGATTGTGAAGCATGGTTTTGTGCCGTCCATTCTAACTTATAGTAGTTTGATTGATGGAATATGCAAACTGGGGAATTTAAAAGATGCATTTAACCTGTATGAGAGTATGGTCAAGACTGGTTATGAACCTGATATTATTCTTTATGGTGTGCTATTAAATGGCCTTTGCAAGCATGGACTGATGAGTGACGCTCTTAGGTTCTTCTTTCAGGTTATTAATAGGGGTGTAAAGCCAAATGTTTATACTTTTAATATGTTGATAGATGGCTCCTGTAGATTGAATAGATTAAAAAATGCTGTGAAGGTGTACAACCAAATGCGAATGTATAACATAAGACCAGATGTGGTGACGTATACTGTGCTTATTCGAGGCATTTCTGAATTGGGGAGACTAAATGATGCACTAGTGTTTTTCTTCCAATCATTGAAGAGGGGTTTCTTGCCTGATGTTGTAACATATTGCACCCTCATTGATGCTTGCTGCAAGCAGAAATATGTATATGCTGGATTCCGGATTTTTGAGATGATGCTAACAAATCGAGTCAATCCTGATATTACCATTTATAATGTTCTCATTAATATGCTTTTCAAAGAAGGTTATTTAGAAGCTGCACAGACACTCTTTGAACAACTTACTGAAAGAGGGCTACGACCTGATATGGTTACATACAATACAATGGTTGGAAGAACGGCAGAAGCCATGGCATTGTACGGTCGTATGTTAATAAGTGGAATCATGCCGGATGCTATCATACAAAGGATGATTGCGAAGCACCTTCTTGAAATTCGGTCCCACCAAAATATGAGCGCCCAACCAGATGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

567

Amino Acids

63.82

Weight (kDa)

7.78

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 174	1.6e-09	PPR repeat family
TPR_24	PF23276	146 - 257	1.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	157 - 189	2e-11	PPR repeat
PPR_3	PF13812	158 - 205	3.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	160 - 209	2.3e-18	PPR repeat family
PPR	PF01535	163 - 193	9.7e-09	PPR repeat
PPR_1	PF12854	191 - 220	1.8e-07	PPR repeat
PPR_3	PF13812	224 - 275	3.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	231 - 279	8.2e-11	PPR repeat family
PPR_1	PF12854	262 - 292	8e-08	PPR repeat
PPR_2	PF13041	266 - 314	3e-13	PPR repeat family
PPR	PF01535	268 - 298	1.9e-06	PPR repeat
PPR_3	PF13812	289 - 345	2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 329	3.6e-09	PPR repeat
PPR	PF01535	304 - 332	1e-05	PPR repeat
PPR_2	PF13041	307 - 349	1.1e-10	PPR repeat family
PPR_1	PF12854	332 - 360	1e-06	PPR repeat
PPR_2	PF13041	335 - 384	1.4e-13	PPR repeat family
PPR_3	PF13812	364 - 415	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	366 - 399	6e-12	PPR repeat
PPR_2	PF13041	375 - 417	1e-12	PPR repeat family
PPR_2	PF13041	413 - 454	1.5e-07	PPR repeat family
PPR_1	PF12854	436 - 468	1.5e-06	PPR repeat
PPR_3	PF13812	436 - 487	2.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	440 - 477	6.6e-07	PPR repeat family
PPR_2	PF13041	475 - 519	4.3e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	821, 1440
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	1229
AccIII	TCCGGA	3 cut(s)	472, 583, 1386
AciI	CCGC	2 cut(s)	182, 437
AclWI	GGATC	2 cut(s)	531, 794
AcsI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 1659
AcuI	CTGAAG	1 cut(s)	688
AfaI	GTAC	7 cut(s)	6, 19, 234, 515, 764, 1184, 1586
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	2 cut(s)	235, 510
AgsI	TTSAA	9 cut(s)	72, 329, 340, 406, 1156, 1303, 1465, 1502, 1658
AhlI	ACTAGT	1 cut(s)	1279
AjuI	GAANNNNNNNTTGG	1 cut(s)	1680
AluBI	AGCT	5 cut(s)	63, 409, 550, 751, 1484
AluI	AGCT	5 cut(s)	63, 409, 550, 751, 1484
Alw26I	GTCTC	2 cut(s)	623, 1258
AlwI	GGATC	2 cut(s)	531, 794
Aor13HI	TCCGGA	3 cut(s)	472, 583, 1386
AoxI	GGCC	1 cut(s)	1036
ApeKI	GCWGC	3 cut(s)	38, 1356, 1484
ApoI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 1659
AseI	ATTAAT	2 cut(s)	1092, 1452
AspLEI	GCGC	1 cut(s)	1685
AspS9I	GGNCC	2 cut(s)	470, 1665
AsuHPI	GGTGA	3 cut(s)	332, 499, 1234
AvaII	GGWCC	2 cut(s)	470, 1665
BanI	GGYRCC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	25, 1343, 1471
BccI	CCATC	3 cut(s)	352, 923, 1133
BceAI	ACGGC	3 cut(s)	841, 883, 1581
BcoDI	GTCTC	2 cut(s)	623, 1258
BcuI	ACTAGT	1 cut(s)	1279
BfaI	CTAG	3 cut(s)	735, 752, 1280
BfmI	CTRYAG	1 cut(s)	1147
BfoI	RGCGCY	1 cut(s)	1686
BisI	GCNGC	4 cut(s)	39, 182, 1357, 1485
BlsI	GCNGC	4 cut(s)	40, 183, 1358, 1486
Bme18I	GGWCC	2 cut(s)	470, 1665
BmgT120I	GGNCC	2 cut(s)	470, 1665
BmiI	GGNNCC	4 cut(s)	180, 477, 1144, 1667
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	7 cut(s)	658, 709, 949, 1264, 1339, 1392, 1609
BmuI	ACTGGG	1 cut(s)	953
BplI	GAGNNNNNCTC	2 cut(s)	1051, 1083
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	1575
BsaWI	WCCGGW	3 cut(s)	472, 583, 1386
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	948, 997
Bse3DI	GCAATG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	3 cut(s)	472, 583, 1386
BseDI	CCNNGG	1 cut(s)	1575
BseGI	GGATG	5 cut(s)	697, 724, 777, 1624, 1641
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	948, 997
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	25, 1343, 1471
BsgI	GTGCAG	1 cut(s)	1470
Bsh1285I	CGRYCG	1 cut(s)	1591
BshFI	GGCC	1 cut(s)	1038
BshNI	GGYRCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	1591
BsiSI	CCGG	4 cut(s)	473, 584, 1387, 1616
BslFI	GGGAC	1 cut(s)	1651
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	623, 1258
BsmFI	GGGAC	1 cut(s)	1651
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	1038
Bso31I	GGTCTC	1 cut(s)	623
Bsp13I	TCCGGA	3 cut(s)	472, 583, 1386
Bsp1407I	TGTACA	3 cut(s)	232, 762, 1182
Bsp143I	GATC	2 cut(s)	523, 786
Bsp19I	CCATGG	1 cut(s)	1575
BspACI	CCGC	2 cut(s)	182, 437
BspANI	GGCC	1 cut(s)	1038
BspEI	TCCGGA	3 cut(s)	472, 583, 1386
BspLI	GGNNCC	4 cut(s)	180, 477, 1144, 1667
BspPI	GGATC	2 cut(s)	531, 794
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	322
BsrGI	TGTACA	3 cut(s)	232, 762, 1182
BsrI	ACTGG	2 cut(s)	948, 997
BssECI	CCNNGG	1 cut(s)	1575
BssMI	GATC	2 cut(s)	523, 786
BssNAI	GTATAC	1 cut(s)	1230
BssT1I	CCWWGG	1 cut(s)	1575
Bst1107I	GTATAC	1 cut(s)	1230
Bst4CI	ACNGT	7 cut(s)	68, 518, 617, 802, 812, 1234, 1589
Bst6I	CTCTTC	2 cut(s)	531, 1298
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	3 cut(s)	232, 762, 1182
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	1046, 1354, 1361
BstDEI	CTNAG	2 cut(s)	461, 1070
BstDSI	CCRYGG	1 cut(s)	1575
BstF5I	GGATG	5 cut(s)	697, 724, 777, 1624, 1641
BstH2I	RGCGCY	1 cut(s)	1686
BstHHI	GCGC	1 cut(s)	1685
BstKTI	GATC	2 cut(s)	526, 789
BstMAI	GTCTC	2 cut(s)	623, 1258
BstMBI	GATC	2 cut(s)	523, 786
BstMCI	CGRYCG	1 cut(s)	1591
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 170
BstNSI	RCATGY	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	1147
BstV1I	GCAGC	3 cut(s)	25, 1343, 1471
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
BstZ17I	GTATAC	1 cut(s)	1230
BsuRI	GGCC	1 cut(s)	1038
BtgI	CCRYGG	1 cut(s)	1575
BtsCI	GGATG	5 cut(s)	697, 724, 777, 1624, 1641
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	360, 798, 817
Cac8I	GCNNGC	3 cut(s)	1046, 1354, 1361
CfoI	GCGC	1 cut(s)	1685
Cfr13I	GGNCC	2 cut(s)	470, 1665
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	7 cut(s)	5, 18, 233, 514, 763, 1183, 1585
CviAII	CATG	6 cut(s)	236, 502, 887, 1049, 1576, 1612
CviQI	GTAC	7 cut(s)	5, 18, 233, 514, 763, 1183, 1585
DdeI	CTNAG	2 cut(s)	461, 1070
DpnI	GATC	2 cut(s)	525, 788
DpnII	GATC	2 cut(s)	523, 786
DraI	TTTAAA	1 cut(s)	954
Eam1104I	CTCTTC	2 cut(s)	531, 1298
EarI	CTCTTC	2 cut(s)	531, 1298
Eco130I	CCWWGG	1 cut(s)	1575
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	470, 1665
Eco57I	CTGAAG	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	1575
EcoT22I	ATGCAT	2 cut(s)	724, 964
ErhI	CCWWGG	1 cut(s)	1575
FaeI	CATG	6 cut(s)	239, 505, 890, 1052, 1579, 1615
FaqI	GGGAC	1 cut(s)	1651
FatI	CATG	6 cut(s)	235, 501, 886, 1048, 1575, 1611
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	1229
Fnu4HI	GCNGC	4 cut(s)	39, 182, 1357, 1485
FokI	GGATG	5 cut(s)	704, 731, 784, 1631, 1648
Fsp4HI	GCNGC	4 cut(s)	39, 182, 1357, 1485
FspBI	CTAG	3 cut(s)	735, 752, 1280
GlaI	GCGC	1 cut(s)	1684
GluI	GCNGC	4 cut(s)	39, 182, 1357, 1485
HaeII	RGCGCY	1 cut(s)	1686
HaeIII	GGCC	1 cut(s)	1038
HapII	CCGG	4 cut(s)	473, 584, 1387, 1616
HgaI	GACGC	1 cut(s)	1073
HhaI	GCGC	1 cut(s)	1685
Hin1II	CATG	6 cut(s)	239, 505, 890, 1052, 1579, 1615
Hin6I	GCGC	1 cut(s)	1683
HinP1I	GCGC	1 cut(s)	1683
HindIII	AAGCTT	2 cut(s)	407, 548
HinfI	GANTC	6 cut(s)	131, 226, 241, 1383, 1416, 1608
HpaII	CCGG	4 cut(s)	473, 584, 1387, 1616
HphI	GGTGA	3 cut(s)	332, 499, 1234
Hpy166II	GTNNAC	6 cut(s)	233, 269, 286, 763, 1183, 1230
Hpy188I	TCNGA	5 cut(s)	99, 429, 528, 876, 1255
Hpy188III	TCNNGA	7 cut(s)	245, 473, 584, 988, 1387, 1424, 1655
Hpy8I	GTNNAC	6 cut(s)	233, 269, 286, 763, 1183, 1230
HpyAV	CCTTC	7 cut(s)	565, 762, 776, 837, 1171, 1463, 1661
HpyCH4III	ACNGT	7 cut(s)	68, 518, 617, 802, 812, 1234, 1589
HpyCH4IV	ACGT	2 cut(s)	512, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 170
HpyF3I	CTNAG	2 cut(s)	461, 1070
HpySE526I	ACGT	2 cut(s)	512, 1226
Hsp92II	CATG	6 cut(s)	239, 505, 890, 1052, 1579, 1615
HspAI	GCGC	1 cut(s)	1683
Kpn2I	TCCGGA	3 cut(s)	472, 583, 1386
Kzo9I	GATC	2 cut(s)	523, 786
LmnI	GCTCC	3 cut(s)	434, 475, 1148
Lsp1109I	GCAGC	3 cut(s)	25, 1343, 1471
LweI	GCATC	7 cut(s)	658, 709, 949, 1264, 1339, 1392, 1609
MaeI	CTAG	3 cut(s)	735, 752, 1280
MaeII	ACGT	2 cut(s)	512, 1226
MaeIII	GTNAC	8 cut(s)	392, 456, 487, 806, 1061, 1222, 1327, 1537
MalI	GATC	2 cut(s)	525, 788
MbiI	CCGCTC	1 cut(s)	437
MboI	GATC	2 cut(s)	523, 786
MboII	GAAGA	6 cut(s)	548, 694, 1069, 1282, 1315, 1572
MflI	RGATCY	1 cut(s)	786
MlyI	GAGTC	1 cut(s)	1425
MmeI	TCCRAC	5 cut(s)	108, 513, 618, 669, 1537
Mph1103I	ATGCAT	2 cut(s)	724, 964
MroI	TCCGGA	3 cut(s)	472, 583, 1386
MslI	CAYNNNNRTG	1 cut(s)	1454
MspI	CCGG	4 cut(s)	473, 584, 1387, 1616
Mva1269I	GAATGC	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	143, 170
NcoI	CCATGG	1 cut(s)	1575
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	2 cut(s)	523, 786
NlaIII	CATG	6 cut(s)	239, 505, 890, 1052, 1579, 1615
NlaIV	GGNNCC	4 cut(s)	180, 477, 1144, 1667
NmuCI	GTSAC	3 cut(s)	487, 1061, 1222
NsiI	ATGCAT	2 cut(s)	724, 964
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	5 cut(s)	131, 226, 241, 1383, 1608
PkrI	GCNGC	4 cut(s)	40, 183, 1358, 1486
PleI	GAGTC	1 cut(s)	1424
PpsI	GAGTC	1 cut(s)	1424
Ppu21I	YACGTR	1 cut(s)	513
PscI	ACATGT	1 cut(s)	235
PshBI	ATTAAT	2 cut(s)	1092, 1452
PsiI	TTATAA	2 cut(s)	821, 1440
PspN4I	GGNNCC	4 cut(s)	180, 477, 1144, 1667
PspPI	GGNCC	2 cut(s)	470, 1665
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	1 cut(s)	786
RsaI	GTAC	7 cut(s)	6, 19, 234, 515, 764, 1184, 1586
RsaNI	GTAC	7 cut(s)	5, 18, 233, 514, 763, 1183, 1585
RseI	CAYNNNNRTG	1 cut(s)	1454
SatI	GCNGC	4 cut(s)	39, 182, 1357, 1485
Sau3AI	GATC	2 cut(s)	523, 786
Sau96I	GGNCC	2 cut(s)	470, 1665
SchI	GAGTC	1 cut(s)	1425
SfaNI	GCATC	7 cut(s)	658, 709, 949, 1264, 1339, 1392, 1609
SfcI	CTRYAG	1 cut(s)	1147
SinI	GGWCC	2 cut(s)	470, 1665
SmiMI	CAYNNNNRTG	1 cut(s)	1454
SpeI	ACTAGT	1 cut(s)	1279
SsiI	CCGC	2 cut(s)	182, 437
SspMI	CTAG	3 cut(s)	735, 752, 1280
StyI	CCWWGG	1 cut(s)	1575
TaaI	ACNGT	7 cut(s)	68, 518, 617, 802, 812, 1234, 1589
TaiI	ACGT	2 cut(s)	515, 1229
TaqI	TCGA	3 cut(s)	652, 1243, 1414
TaqII	GACCGA	2 cut(s)	860, 1653
TatI	WGTACW	3 cut(s)	232, 762, 1182
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	5 cut(s)	131, 226, 241, 1383, 1608
TscAI	CASTG	3 cut(s)	360, 805, 817
TseFI	GTSAC	3 cut(s)	487, 1061, 1222
TseI	GCWGC	3 cut(s)	38, 1356, 1484
Tsp45I	GTSAC	3 cut(s)	487, 1061, 1222
TspDTI	ATGAA	3 cut(s)	335, 578, 1014
TspRI	CASTG	3 cut(s)	360, 805, 817
VpaK11BI	GGWCC	2 cut(s)	470, 1665
VspI	ATTAAT	2 cut(s)	1092, 1452
XapI	RAATTY	8 cut(s)	52, 73, 106, 201, 340, 739, 949, 1659
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	1229
XspI	CTAG	3 cut(s)	735, 752, 1280
Zsp2I	ATGCAT	2 cut(s)	724, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.