Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

52875448 .. 52876122

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG411800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTATGCCAATTCGGTACTCAATTTAACATTTCTGCTGTTTTTACAGAGAATTTTACTAGTTACGGTTCAAATTTGAGTTATGTTGGTGGTTTTCTGATTGAGAATTTTTGCCGAAATGGGGAGTTGGATTCTGCTGTTGAGGCATTGGTTTGTATGTGTGCATTGGGTGCTTCGGTGCCGCCTTTTTCTGTGTGTAGAATTTTGAGTGCTTGTGTTGATACGAATCGTGTACATGTGATTCTTGATATATATGGAAAATTGTGTGGACAAGGCTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTTGGGCAGTGGTGAAGTTGAAATGGGATTGAATTTTCATTCAGCAGTGATGGATAGAAGTTTTGTGCTTGATGTAGTTGCTTGTAACAAGATTTTGAAGCTTCTTTGTAGAGAAAATCAGAAAGGAGCGGAGGATTTCTTTGATGTGTTACTAAGGGTTGGTCCGGAGCCGAATATGGTGACTTTTAGCACCATGAGTAACACGTACTGTAAGGATTGGAGGTTGGAAGAGGCAATTAAGCTTTATGAGGTTATGAAAGAGAAGGGTATCAGTCCGGACTTGGTTGTGTATAGTATTCTTATTGACGGTCTCTTTAAGGCAGGGAAGATTGTTAAGAGGGGCATCGACTTTTTTCTGTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

224

Amino Acids

24.9

Weight (kDa)

5.27

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 174	3.1e-08	PPR repeat family
PPR_1	PF12854	157 - 189	3.8e-08	PPR repeat
PPR	PF01535	163 - 193	6.5e-07	PPR repeat
PPR_2	PF13041	171 - 209	2.2e-12	PPR repeat family
PPR_1	PF12854	191 - 213	3.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	437
AccIII	TCCGGA	2 cut(s)	472, 583
AciI	CCGC	2 cut(s)	182, 437
AcsI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
AfaI	GTAC	3 cut(s)	19, 234, 515
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	2 cut(s)	235, 510
AgsI	TTSAA	4 cut(s)	72, 329, 340, 406
AhlI	ACTAGT	1 cut(s)	59
AluBI	AGCT	2 cut(s)	409, 550
AluI	AGCT	2 cut(s)	409, 550
Alw26I	GTCTC	1 cut(s)	623
Aor13HI	TCCGGA	2 cut(s)	472, 583
ApoI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	332, 499
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	178
BccI	CCATC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	623
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	180, 477
BmsI	GCATC	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	623
BsaWI	WCCGGW	2 cut(s)	472, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	2 cut(s)	472, 583
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	473, 584
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	623
Bso31I	GGTCTC	1 cut(s)	623
Bsp13I	TCCGGA	2 cut(s)	472, 583
Bsp1407I	TGTACA	1 cut(s)	232
BspACI	CCGC	2 cut(s)	182, 437
BspEI	TCCGGA	2 cut(s)	472, 583
BspLI	GGNNCC	2 cut(s)	180, 477
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	68, 518, 617
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	461
BstMAI	GTCTC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 170
BstNSI	RCATGY	1 cut(s)	239
BtsI	GCAGTG	2 cut(s)	322, 360
BtsIMutI	CAGTG	2 cut(s)	322, 360
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	18, 233, 514
CviAII	CATG	2 cut(s)	236, 502
CviJI	RGCY	5 cut(s)	276, 307, 409, 478, 550
CviKI_1	RGCY	5 cut(s)	276, 307, 409, 478, 550
CviQI	GTAC	3 cut(s)	18, 233, 514
DdeI	CTNAG	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	470
FaeI	CATG	2 cut(s)	239, 505
FatI	CATG	2 cut(s)	235, 501
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	182
HapII	CCGG	2 cut(s)	473, 584
Hin1II	CATG	2 cut(s)	239, 505
HindIII	AAGCTT	2 cut(s)	407, 548
HinfI	GANTC	3 cut(s)	131, 226, 241
HpaII	CCGG	2 cut(s)	473, 584
HphI	GGTGA	2 cut(s)	332, 499
Hpy166II	GTNNAC	3 cut(s)	233, 269, 286
Hpy188I	TCNGA	2 cut(s)	99, 429
Hpy188III	TCNNGA	3 cut(s)	245, 473, 584
Hpy8I	GTNNAC	3 cut(s)	233, 269, 286
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	3 cut(s)	68, 518, 617
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	2 cut(s)	164, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 170
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	2 cut(s)	239, 505
Kpn2I	TCCGGA	2 cut(s)	472, 583
LmnI	GCTCC	2 cut(s)	434, 475
LpnPI	CCDG	3 cut(s)	486, 597, 615
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	5 cut(s)	62, 392, 456, 487, 506
MbiI	CCGCTC	1 cut(s)	437
MboII	GAAGA	2 cut(s)	548, 646
MluCI	AATT	9 cut(s)	11, 23, 52, 73, 106, 201, 260, 340, 543
MmeI	TCCRAC	2 cut(s)	108, 513
MnlI	CCTC	6 cut(s)	136, 433, 522, 532, 550, 639
MroI	TCCGGA	2 cut(s)	472, 583
MseI	TTAA	4 cut(s)	27, 546, 624, 642
MspI	CCGG	2 cut(s)	473, 584
MwoI	GCNNNNNNNGC	2 cut(s)	143, 170
NlaIII	CATG	2 cut(s)	239, 505
NlaIV	GGNNCC	2 cut(s)	180, 477
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	131, 226, 241
PkrI	GCNGC	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	513
PscI	ACATGT	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	180, 477
PspPI	GGNCC	1 cut(s)	470
RsaI	GTAC	3 cut(s)	19, 234, 515
RsaNI	GTAC	3 cut(s)	18, 233, 514
SaqAI	TTAA	4 cut(s)	27, 546, 624, 642
SatI	GCNGC	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	470
SetI	ASST	5 cut(s)	411, 515, 533, 552, 561
SfaNI	GCATC	1 cut(s)	660
SinI	GGWCC	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	9 cut(s)	11, 23, 52, 73, 106, 201, 260, 340, 543
SsiI	CCGC	2 cut(s)	182, 437
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	68, 518, 617
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	1 cut(s)	654
TasI	AATT	9 cut(s)	11, 23, 52, 73, 106, 201, 260, 340, 543
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	131, 226, 241
Tru1I	TTAA	4 cut(s)	27, 546, 624, 642
Tru9I	TTAA	4 cut(s)	27, 546, 624, 642
TscAI	CASTG	2 cut(s)	322, 360
TseFI	GTSAC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	335, 578
TspRI	CASTG	2 cut(s)	322, 360
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.