Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

58852698 .. 58853090

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAACGCCAATTCGGTACTCAATTTAACATTTCTGCTGTTTTTACAGAGAATTTTAGTAGCTACTGTTCAAATTTGAATTATGTTGGTGGTTTTCTGATTGAGAATTTTTGCCGAAATGGGGAGTTGGATTCTGCTGTTGAGGCATTGGTTTGTATGTGTGCATTGGGTGCTTCGGTGCCGCCTTTTGCTGTGTGTAGAATTTTGAGTGCTTGTGTTGATACGAATCGTGTACATGTGATTCTTGATATATATGGAAAATTGTGTGGACAAGGTTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTTGGGCAAAGGTGAAGTTGAAATGGGATTGAATTTTCATTCAGCAGTGATGGATAGAGGTTTTGTGCTTGATGTAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

130

Amino Acids

14.21

Weight (kDa)

4.83

Isoelectric Point (pI)

23.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
AfaI	GTAC	2 cut(s)	19, 234
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	72, 79, 329, 340
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
ApoI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
AsuHPI	GGTGA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	178
BccI	CCATC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	232
BspACI	CCGC	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 170
BstNSI	RCATGY	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	18, 233
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	63, 307
CviKI_1	RGCY	2 cut(s)	63, 307
CviQI	GTAC	2 cut(s)	18, 233
FaeI	CATG	1 cut(s)	239
FaiI	YATR	7 cut(s)	84, 158, 237, 251, 253, 255, 299
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	3 cut(s)	131, 226, 241
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	233, 269, 286
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	3 cut(s)	233, 269, 286
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 170
Hsp92II	CATG	1 cut(s)	239
MluCI	AATT	9 cut(s)	11, 23, 52, 73, 79, 106, 201, 260, 340
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	2 cut(s)	136, 359
MseI	TTAA	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	143, 170
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	131, 226, 241
PkrI	GCNGC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	180
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
RsaI	GTAC	2 cut(s)	19, 234
RsaNI	GTAC	2 cut(s)	18, 233
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	182
SetI	ASST	4 cut(s)	65, 277, 322, 370
SgeI	CNNG	8 cut(s)	225, 242, 248, 257, 284, 301, 315, 389
Sse9I	AATT	9 cut(s)	11, 23, 52, 73, 79, 106, 201, 260, 340
SsiI	CCGC	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	9 cut(s)	11, 23, 52, 73, 79, 106, 201, 260, 340
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	131, 226, 241
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	360
XapI	RAATTY	5 cut(s)	52, 73, 106, 201, 340
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.