Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

56932305 .. 56933333

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAACGCCAATTCGGTACTCAATTTAACATTTCTGCTGTTTTTACAGAGAATTTTAGTAGCTACGGTTCAAATTTGAATTATGTTGGTGGTTTTCTGATTGAGAATTTTTGCCGAAATGGGGAGTTGGATTCTGCTGTTGAGGCATTGGTTTGTATGTGTGCATTGGGTGCTTCGGTGCCGCCTTTTGCTGTGTGTATAATTTTGAGTGCCTGTGTTGATACGAATCGTGTACATGTGATTCTTGATATATATGGAAAATTGTGTGGACAAGGTTTTGGTGTTTACGAGTTTGTTATGTCAAGGCTTTTGGGCAAAGGAGTGAAGGATTTCTTTGATGTGTTACTAAGGGTTGGTCCGGAGCCGAATGTGGTGACTTTTAGCACCATGATTAACACGTACGGTAAAGATCGGAGGTTGGAAGAGGCAATTAAGCTTTATGAGGTTATGAAAGAGAAGGGTATCAGTCCGGACTTGGTTGTGTATAGCATTCTTATTGACAGTCTCTTTAAGGCAGGGAAGTTGGAGGAGGGGCATCGACTTTTTTCTGTTGCATTAGATAGTGGGATTAAGTTGGATGTAGTCATCTTCAGTTCTGTTATGGATGCATATGTAAGAACTAGAAATTTGGAAAAGCTAGTGGAGATGTACAGAAGGATGTATAACGAAGGGATCTCACAGAACACTGTTAGTTACAGTGTTCTTATAAACGGCTTGTGTTATAAGTTCTGTTTCTTTGTAGTCTCTGAGAGAGAGAGAGAGAGAGAGAAGAGGAAAAAAAAATTAATTAATAAACAAATGGACAAAAATGCCCTTCTTAACGGAGGTAACGGCCATATGTACCAATCTTCGGTCGGGCAAAGAACCTCAGGTACCGTATTGATGTTTTTTTTTGTCAGGTACCAAAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

304

Amino Acids

34.4

Weight (kDa)

8.67

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	112 - 219	7.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	119 - 151	3.4e-09	PPR repeat
PPR_3	PF13812	119 - 167	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	122 - 171	2.2e-16	PPR repeat family
PPR	PF01535	125 - 155	3.7e-08	PPR repeat
PPR_1	PF12854	153 - 183	2.2e-07	PPR repeat
PPR_3	PF13812	187 - 237	1.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	193 - 240	7.4e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	707, 723, 913
Acc65I	GGTACC	2 cut(s)	872, 900
AccB1I	GGYRCC	3 cut(s)	178, 872, 900
AccIII	TCCGGA	2 cut(s)	358, 469
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	832
AcsI	RAATTY	4 cut(s)	52, 73, 106, 625
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	7 cut(s)	19, 234, 401, 650, 842, 874, 902
AfiI	CCNNNNNNNGG	2 cut(s)	121, 850
AflIII	ACRYGT	2 cut(s)	235, 396
AgsI	TTSAA	2 cut(s)	72, 79
AluBI	AGCT	3 cut(s)	63, 436, 637
AluI	AGCT	3 cut(s)	63, 436, 637
Alw26I	GTCTC	2 cut(s)	509, 748
AlwI	GGATC	1 cut(s)	680
Aor13HI	TCCGGA	2 cut(s)	358, 469
AoxI	GGCC	1 cut(s)	832
ApoI	RAATTY	4 cut(s)	52, 73, 106, 625
AseI	ATTAAT	2 cut(s)	785, 789
Asp700I	GAANNNNTTC	1 cut(s)	329
Asp718I	GGTACC	2 cut(s)	872, 900
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	868
BanI	GGYRCC	3 cut(s)	178, 872, 900
BceAI	ACGGC	2 cut(s)	727, 847
BcoDI	GTCTC	2 cut(s)	509, 748
BfaI	CTAG	2 cut(s)	621, 638
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	4 cut(s)	180, 363, 874, 902
BmsI	GCATC	2 cut(s)	544, 595
BsaAI	YACGTR	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	358, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 850
Bse21I	CCTNAGG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	2 cut(s)	358, 469
BseGI	GGATG	3 cut(s)	583, 610, 663
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	121, 850
BseMII	CTCAG	2 cut(s)	738, 882
BseRI	GAGGAG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	1 cut(s)	834
BshNI	GGYRCC	3 cut(s)	178, 872, 900
BsiEI	CGRYCG	1 cut(s)	855
BsiSI	CCGG	2 cut(s)	359, 470
BsiWI	CGTACG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	121, 850
BsmAI	GTCTC	2 cut(s)	509, 748
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	834
Bsp13I	TCCGGA	2 cut(s)	358, 469
Bsp1407I	TGTACA	2 cut(s)	232, 648
Bsp143I	GATC	2 cut(s)	409, 672
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	2 cut(s)	739, 881
BspEI	TCCGGA	2 cut(s)	358, 469
BspLI	GGNNCC	4 cut(s)	180, 363, 874, 902
BspPI	GGATC	1 cut(s)	680
BspT107I	GGYRCC	3 cut(s)	178, 872, 900
BsrGI	TGTACA	2 cut(s)	232, 648
BssMI	GATC	2 cut(s)	409, 672
Bst4CI	ACNGT	6 cut(s)	68, 404, 503, 688, 698, 877
Bst6I	CTCTTC	2 cut(s)	417, 764
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	2 cut(s)	232, 648
BstBAI	YACGTR	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	347, 747, 868
BstF5I	GGATG	3 cut(s)	583, 610, 663
BstKTI	GATC	2 cut(s)	412, 675
BstMAI	GTCTC	2 cut(s)	509, 748
BstMBI	GATC	2 cut(s)	409, 672
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 170
BstNSI	RCATGY	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
Bsu36I	CCTNAGG	1 cut(s)	868
BsuRI	GGCC	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	583, 610, 663
BtsIMutI	CAGTG	2 cut(s)	684, 703
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	7 cut(s)	18, 233, 400, 649, 841, 873, 901
CviAII	CATG	2 cut(s)	236, 388
CviJI	RGCY	7 cut(s)	63, 307, 364, 436, 637, 714, 834
CviKI_1	RGCY	7 cut(s)	63, 307, 364, 436, 637, 714, 834
CviQI	GTAC	7 cut(s)	18, 233, 400, 649, 841, 873, 901
DdeI	CTNAG	3 cut(s)	347, 747, 868
DpnI	GATC	2 cut(s)	411, 674
DpnII	GATC	2 cut(s)	409, 672
EaeI	YGGCCR	1 cut(s)	832
Eam1104I	CTCTTC	2 cut(s)	417, 764
EarI	CTCTTC	2 cut(s)	417, 764
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	868
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	2 cut(s)	239, 391
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	235, 387
FauNDI	CATATG	2 cut(s)	610, 837
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	3 cut(s)	590, 617, 670
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	2 cut(s)	621, 638
GluI	GCNGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	834
HapII	CCGG	2 cut(s)	359, 470
Hin1II	CATG	2 cut(s)	239, 391
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	131, 226, 241
HpaII	CCGG	2 cut(s)	359, 470
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	3 cut(s)	233, 269, 286
Hpy188I	TCNGA	3 cut(s)	99, 414, 748
Hpy188III	TCNNGA	3 cut(s)	245, 359, 470
Hpy8I	GTNNAC	3 cut(s)	233, 269, 286
HpyAV	CCTTC	5 cut(s)	319, 451, 648, 662, 824
HpyCH4III	ACNGT	6 cut(s)	68, 404, 503, 688, 698, 877
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	164, 554, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 170
HpyF3I	CTNAG	3 cut(s)	347, 747, 868
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	239, 391
Kpn2I	TCCGGA	2 cut(s)	358, 469
KpnI	GGTACC	2 cut(s)	876, 904
Kzo9I	GATC	2 cut(s)	409, 672
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	6 cut(s)	226, 372, 483, 501, 855, 883
LweI	GCATC	2 cut(s)	544, 595
MaeI	CTAG	2 cut(s)	621, 638
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	4 cut(s)	342, 373, 692, 827
MalI	GATC	2 cut(s)	411, 674
MboI	GATC	2 cut(s)	409, 672
MboII	GAAGA	4 cut(s)	434, 580, 781, 840
MflI	RGATCY	1 cut(s)	672
MmeI	TCCRAC	4 cut(s)	108, 399, 504, 555
MnlI	CCTC	9 cut(s)	136, 408, 418, 436, 520, 523, 765, 818, 877
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	2 cut(s)	358, 469
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	8 cut(s)	27, 393, 432, 510, 570, 785, 789, 819
MspI	CCGG	2 cut(s)	359, 470
Mva1269I	GAATGC	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	143, 170
NdeI	CATATG	2 cut(s)	610, 837
NdeII	GATC	2 cut(s)	409, 672
NlaIII	CATG	2 cut(s)	239, 391
NlaIV	GGNNCC	4 cut(s)	180, 363, 874, 902
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	239
PacI	TTAATTAA	1 cut(s)	789
PciI	ACATGT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	131, 226, 241
Pfl23II	CGTACG	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	399
PscI	ACATGT	1 cut(s)	235
PshBI	ATTAAT	2 cut(s)	785, 789
PsiI	TTATAA	3 cut(s)	707, 723, 913
PspLI	CGTACG	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	180, 363, 874, 902
PspPI	GGNCC	1 cut(s)	356
PsrI	GAACNNNNNNTAC	4 cut(s)	52, 84, 856, 888
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	7 cut(s)	19, 234, 401, 650, 842, 874, 902
RsaNI	GTAC	7 cut(s)	18, 233, 400, 649, 841, 873, 901
SaqAI	TTAA	8 cut(s)	27, 393, 432, 510, 570, 785, 789, 819
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	409, 672
Sau96I	GGNCC	1 cut(s)	356
SfaNI	GCATC	2 cut(s)	544, 595
SinI	GGWCC	1 cut(s)	356
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	621, 638
TaaI	ACNGT	6 cut(s)	68, 404, 503, 688, 698, 877
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	538
TaqII	GACCGA	1 cut(s)	841
TatI	WGTACW	2 cut(s)	232, 648
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	131, 226, 241
Tru1I	TTAA	8 cut(s)	27, 393, 432, 510, 570, 785, 789, 819
Tru9I	TTAA	8 cut(s)	27, 393, 432, 510, 570, 785, 789, 819
TscAI	CASTG	2 cut(s)	691, 703
TseFI	GTSAC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	837
TspRI	CASTG	2 cut(s)	691, 703
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	2 cut(s)	785, 789
XapI	RAATTY	4 cut(s)	52, 73, 106, 625
XceI	RCATGY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	621, 638
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.