Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Forward (+)

13752957 .. 13759373

Gene Structure 6417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G132700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCCTCTTCCGCTTCTGAAGAAGCCCTTCAGGCCTCTTTGCCCAAGAAACTCAAGGAGAATGAGGGTGCTTTGGTCAGTGATCCTGGGAACTCAGGTAGTGCAGCAGGATCAGCAGATAGCATTGATCTCCTCAAGATTTCAACATCAGGATCATCCAATTCAAATGTTGTCAAAACTTCCAATGGTGTTTCATCTAATGACGATGATGATATGAGCATTGAAGATGATGATGGTGATGATGATAATGAATATGACTATGATGACAATGATGACAATGATGGTTTTTTGTATGATGATGATGATTATATGACTCTGCAATCTCATTTTGATAATGTGAACTTGCCTCCTGGGGTAGAAGCTCCACTGCCCTGGTTGAATGATCCTTCACCAAGTGAGAACTTAGCATCCACTAAGACGTTAACTATTTCAGATCTACCACCATGTAGTTCAACTGTTCCTTCTGAGTCAAGTTCTAGTACGAAACCGGCAGACAGCATTGATGACTGTATCATTCAAAATTCCCAACAGTTTAAGCAATTTGATATTGTGGAAGATTTCTCGGATCATCACTATAGCCGCATGGGATTTTCAGATGAGCAGCCACCCAAGTCTTGGGCAAAGAGAATTCAGGAAGAGTGGAAAATTTTGGAGAAGGACTTACCAGACACTATATTTGTAAGGGTTTATGAAGCAAGAATGGAACTTTTGAGGGCAGTTATTATAGGACCTCCGGGCACTCCCTACCATGACGGTCTTTTTGTCTTTGATTGTCTCTTCCCCACTAACTATCCTAAGTCACCACCGATGGTGTACTACTATTCAGGAGGTCTTCGATTAAATCCAAATTTGTATGAATGTGGGAAAGTTTGTCTCAGTCTCCTAGGCACTTGGAGTGGAAAACAAAATGAAAATTGGGTCCCAGGGCAATCAACAATGCTACAAGTTTTAGTCTCTATACAAGCTCTTATTCTGAATGCAGACCCCTTCTTCAATGAGCCGGGGTATGATACAACGTATGTTGGAGCAGAAGGGCAAAAGAGGTCCAGGAGCTACAATGAGGAAGTATTTATTTTATCCCTAAAGACGATGATGTATACACTAAGGAGGCCACCTAAGTATTTTGAGGACTTTGTCTTGGGTCATTTTCGCAACCGTGCACATAATATTCTGGCAGCATGTAAAGCATATACTGAGGGCACTTTAGTAGGGTCTGTTAGCGAAGATGCAGCCCAGAATGTTGAAAATAGTGGCTCAAAACAGTTCAAGTCAAGTGTAGCTAGGATGATGAATATGCTTATTACAAATTTCACCAAAAATGGATCAACAGATTGTGAGCAGTTTCGAGTTGGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

453

Amino Acids

50.03

Weight (kDa)

4.41

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccI	GTMKAC	1 cut(s)	1097
AciI	CCGC	2 cut(s)	12, 580
AclWI	GGATC	6 cut(s)	77, 118, 160, 377, 573, 1330
AcsI	RAATTY	5 cut(s)	520, 627, 645, 847, 1306
AcuI	CTGAAG	2 cut(s)	14, 39
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	481, 815
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgsI	TTSAA	9 cut(s)	144, 165, 224, 379, 453, 518, 994, 1244, 1267
AjnI	CCWGG	5 cut(s)	85, 349, 371, 922, 1046
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	362, 965, 1053, 1280
AluI	AGCT	4 cut(s)	362, 965, 1053, 1280
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	4 cut(s)	779, 878, 884, 958
Alw44I	GTGCAC	1 cut(s)	1158
AlwI	GGATC	6 cut(s)	77, 118, 160, 377, 573, 1330
AoxI	GGCC	3 cut(s)	3, 33, 1109
ApaLI	GTGCAC	1 cut(s)	1158
ApeKI	GCWGC	4 cut(s)	104, 601, 1175, 1229
ApoI	RAATTY	5 cut(s)	520, 627, 645, 847, 1306
ArsI	GACNNNNNNTTYG	4 cut(s)	659, 691, 743, 775
Asp700I	GAANNNNTTC	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	883
AspS9I	GGNCC	3 cut(s)	728, 919, 1044
AsuC2I	CCSGG	2 cut(s)	735, 1002
AsuHPI	GGTGA	4 cut(s)	248, 381, 792, 1303
AvaII	GGWCC	3 cut(s)	728, 919, 1044
AvrII	CCTAGG	1 cut(s)	883
BaeGI	GKGCMC	3 cut(s)	740, 1162, 1202
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	4 cut(s)	116, 613, 1187, 1241
BccI	CCATC	3 cut(s)	227, 275, 802
BciT130I	CCWGG	5 cut(s)	87, 351, 373, 924, 1048
BcnI	CCSGG	2 cut(s)	735, 1002
BcoDI	GTCTC	4 cut(s)	779, 878, 884, 958
BfaI	CTAG	3 cut(s)	477, 884, 1281
BfmI	CTRYAG	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	5 cut(s)	105, 580, 602, 1176, 1230
BlnI	CCTAGG	1 cut(s)	883
BlsI	GCNGC	5 cut(s)	106, 581, 603, 1177, 1231
Bme1390I	CCNGG	7 cut(s)	87, 351, 373, 735, 924, 1002, 1048
Bme18I	GGWCC	3 cut(s)	728, 919, 1044
BmgT120I	GGNCC	3 cut(s)	728, 919, 1044
BmiI	GGNNCC	3 cut(s)	920, 921, 1354
BmrFI	CCNGG	7 cut(s)	87, 351, 373, 735, 924, 1002, 1048
BmsI	GCATC	2 cut(s)	416, 1216
BpiI	GAAGAC	1 cut(s)	824
BpuEI	CTTGAG	2 cut(s)	38, 119
BpuMI	CCSGG	2 cut(s)	735, 1002
BsaJI	CCNNGG	7 cut(s)	86, 350, 371, 883, 922, 923, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse118I	RCCGGY	1 cut(s)	487
BseBI	CCWGG	5 cut(s)	87, 351, 373, 924, 1048
BseDI	CCNNGG	7 cut(s)	86, 350, 371, 883, 922, 923, 1001
BseGI	GGATG	3 cut(s)	155, 407, 1290
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMII	CTCAG	4 cut(s)	108, 456, 889, 1185
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	3 cut(s)	740, 1162, 1202
BseXI	GCAGC	4 cut(s)	116, 613, 1187, 1241
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	5, 35, 1111
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiSI	CCGG	3 cut(s)	488, 734, 1001
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	4 cut(s)	779, 878, 884, 958
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	3 cut(s)	5, 35, 1111
Bsp1286I	GDGCHC	3 cut(s)	740, 1162, 1202
Bsp143I	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
BspACI	CCGC	2 cut(s)	12, 580
BspANI	GGCC	3 cut(s)	5, 35, 1111
BspCNI	CTCAG	4 cut(s)	107, 457, 888, 1186
BspLI	GGNNCC	3 cut(s)	920, 921, 1354
BspPI	GGATC	6 cut(s)	77, 118, 160, 377, 573, 1330
BsrFI	RCCGGY	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	7 cut(s)	86, 350, 371, 883, 922, 923, 1001
BssMI	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
BssNAI	GTATAC	1 cut(s)	1098
BssT1I	CCWWGG	1 cut(s)	883
Bst1107I	GTATAC	1 cut(s)	1098
Bst2UI	CCWGG	5 cut(s)	87, 351, 373, 924, 1048
Bst4CI	ACNGT	6 cut(s)	457, 509, 531, 755, 1157, 1263
Bst6I	CTCTTC	3 cut(s)	13, 630, 782
BstDEI	CTNAG	9 cut(s)	94, 403, 414, 465, 795, 875, 1103, 1116, 1194
BstF5I	GGATG	3 cut(s)	155, 407, 1290
BstKTI	GATC	8 cut(s)	85, 113, 130, 155, 385, 436, 568, 1325
BstMAI	GTCTC	4 cut(s)	779, 878, 884, 958
BstMBI	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 32, 113, 1184
BstNI	CCWGG	5 cut(s)	87, 351, 373, 924, 1048
BstNSI	RCATGY	1 cut(s)	1182
BstSCI	CCNGG	7 cut(s)	85, 349, 371, 733, 922, 1000, 1046
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	3 cut(s)	740, 1162, 1202
BstV1I	GCAGC	4 cut(s)	116, 613, 1187, 1241
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	1098
BsuRI	GGCC	3 cut(s)	5, 35, 1111
BtsCI	GGATG	3 cut(s)	155, 407, 1290
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	2 cut(s)	85, 365
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	728, 919, 1044
Csp6I	GTAC	2 cut(s)	480, 814
CviAII	CATG	4 cut(s)	444, 583, 749, 1179
CviQI	GTAC	2 cut(s)	480, 814
DdeI	CTNAG	9 cut(s)	94, 403, 414, 465, 795, 875, 1103, 1116, 1194
DpnI	GATC	8 cut(s)	84, 112, 129, 154, 384, 435, 567, 1324
DpnII	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	3 cut(s)	13, 630, 782
EarI	CTCTTC	3 cut(s)	13, 630, 782
Eco130I	CCWWGG	1 cut(s)	883
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	3 cut(s)	728, 919, 1044
Eco57I	CTGAAG	2 cut(s)	14, 39
EcoO109I	RGGNCCY	2 cut(s)	728, 919
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	5 cut(s)	85, 349, 371, 922, 1046
EcoT14I	CCWWGG	1 cut(s)	883
ErhI	CCWWGG	1 cut(s)	883
FaeI	CATG	4 cut(s)	447, 586, 752, 1182
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	4 cut(s)	443, 582, 748, 1178
FblI	GTMKAC	1 cut(s)	1097
Fnu4HI	GCNGC	5 cut(s)	105, 580, 602, 1176, 1230
FokI	GGATG	3 cut(s)	142, 394, 1297
Fsp4HI	GCNGC	5 cut(s)	105, 580, 602, 1176, 1230
FspBI	CTAG	3 cut(s)	477, 884, 1281
GluI	GCNGC	5 cut(s)	105, 580, 602, 1176, 1230
HaeIII	GGCC	3 cut(s)	5, 35, 1111
HapII	CCGG	3 cut(s)	488, 734, 1001
Hin1II	CATG	4 cut(s)	447, 586, 752, 1182
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	313, 467
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	3 cut(s)	488, 734, 1001
HphI	GGTGA	4 cut(s)	248, 381, 792, 1303
Hpy166II	GTNNAC	5 cut(s)	340, 423, 814, 1098, 1160
Hpy188I	TCNGA	6 cut(s)	19, 433, 466, 565, 595, 975
Hpy188III	TCNNGA	4 cut(s)	136, 150, 632, 825
Hpy8I	GTNNAC	5 cut(s)	340, 423, 814, 1098, 1160
HpyAV	CCTTC	6 cut(s)	38, 396, 471, 649, 997, 1025
HpyCH4III	ACNGT	6 cut(s)	457, 509, 531, 755, 1157, 1263
HpyCH4IV	ACGT	2 cut(s)	419, 1016
HpyCH4V	TGCA	5 cut(s)	104, 319, 980, 1160, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 32, 113, 1184
HpyF3I	CTNAG	9 cut(s)	94, 403, 414, 465, 795, 875, 1103, 1116, 1194
HpySE526I	ACGT	2 cut(s)	419, 1016
Hsp92II	CATG	4 cut(s)	447, 586, 752, 1182
KflI	GGGWCCC	1 cut(s)	919
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
LmnI	GCTCC	4 cut(s)	367, 1025, 1050, 1352
Lsp1109I	GCAGC	4 cut(s)	116, 613, 1187, 1241
LweI	GCATC	2 cut(s)	416, 1216
MaeI	CTAG	3 cut(s)	477, 884, 1281
MaeII	ACGT	2 cut(s)	419, 1016
MaeIII	GTNAC	1 cut(s)	798
MalI	GATC	8 cut(s)	84, 112, 129, 154, 384, 435, 567, 1324
MboI	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
MboII	GAAGA	8 cut(s)	32, 236, 566, 647, 769, 824, 982, 1235
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	3 cut(s)	740, 1162, 1202
MluCI	AATT	8 cut(s)	160, 520, 539, 627, 645, 847, 913, 1306
MlyI	GAGTC	2 cut(s)	307, 476
MmeI	TCCRAC	2 cut(s)	1003, 1330
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	3 cut(s)	422, 534, 839
MspI	CCGG	3 cut(s)	488, 734, 1001
MspR9I	CCNGG	7 cut(s)	87, 351, 373, 735, 924, 1002, 1048
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	5 cut(s)	87, 351, 373, 924, 1048
MwoI	GCNNNNNNNGC	4 cut(s)	11, 32, 113, 1184
NciI	CCSGG	2 cut(s)	735, 1002
NdeII	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
NlaIII	CATG	4 cut(s)	447, 586, 752, 1182
NlaIV	GGNNCC	3 cut(s)	920, 921, 1354
NmuCI	GTSAC	1 cut(s)	798
NspI	RCATGY	1 cut(s)	1182
PasI	CCCWGGG	1 cut(s)	923
PceI	AGGCCT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	1133
PflMI	CCANNNNNTGG	1 cut(s)	615
PfoI	TCCNGGA	1 cut(s)	1046
PkrI	GCNGC	5 cut(s)	106, 581, 603, 1177, 1231
PleI	GAGTC	2 cut(s)	307, 475
PpsI	GAGTC	2 cut(s)	307, 475
PpuMI	RGGWCCY	2 cut(s)	728, 919
Psp5II	RGGWCCY	2 cut(s)	728, 919
Psp6I	CCWGG	5 cut(s)	85, 349, 371, 922, 1046
PspGI	CCWGG	5 cut(s)	85, 349, 371, 922, 1046
PspN4I	GGNNCC	3 cut(s)	920, 921, 1354
PspPI	GGNCC	3 cut(s)	728, 919, 1044
PspPPI	RGGWCCY	2 cut(s)	728, 919
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	1133
RsaI	GTAC	2 cut(s)	481, 815
RsaNI	GTAC	2 cut(s)	480, 814
SaqAI	TTAA	3 cut(s)	422, 534, 839
SatI	GCNGC	5 cut(s)	105, 580, 602, 1176, 1230
Sau3AI	GATC	8 cut(s)	82, 110, 127, 152, 382, 433, 565, 1322
Sau96I	GGNCC	3 cut(s)	728, 919, 1044
SchI	GAGTC	2 cut(s)	307, 476
ScrFI	CCNGG	7 cut(s)	87, 351, 373, 735, 924, 1002, 1048
SduI	GDGCHC	3 cut(s)	740, 1162, 1202
SfaNI	GCATC	2 cut(s)	416, 1216
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	3 cut(s)	728, 919, 1044
SmlI	CTYRAG	2 cut(s)	53, 134
SmoI	CTYRAG	2 cut(s)	53, 134
Sse9I	AATT	8 cut(s)	160, 520, 539, 627, 645, 847, 913, 1306
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	12, 580
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	3 cut(s)	477, 884, 1281
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	7 cut(s)	85, 349, 371, 733, 922, 1000, 1046
StyI	CCWWGG	1 cut(s)	883
TaaI	ACNGT	6 cut(s)	457, 509, 531, 755, 1157, 1263
TaiI	ACGT	2 cut(s)	422, 1019
TaqI	TCGA	2 cut(s)	835, 1345
TasI	AATT	8 cut(s)	160, 520, 539, 627, 645, 847, 913, 1306
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	422, 534, 839
Tru9I	TTAA	3 cut(s)	422, 534, 839
TscAI	CASTG	2 cut(s)	85, 372
TseFI	GTSAC	1 cut(s)	798
TseI	GCWGC	4 cut(s)	104, 601, 1175, 1229
Tsp45I	GTSAC	1 cut(s)	798
TspDTI	ATGAA	6 cut(s)	183, 264, 705, 870, 924, 1304
TspRI	CASTG	2 cut(s)	85, 372
Tth111I	GACNNNGTC	1 cut(s)	1133
Van91I	CCANNNNNTGG	1 cut(s)	615
VneI	GTGCAC	1 cut(s)	1158
VpaK11BI	GGWCC	3 cut(s)	728, 919, 1044
XapI	RAATTY	5 cut(s)	520, 627, 645, 847, 1306
XceI	RCATGY	1 cut(s)	1182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmaJI	CCTAGG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	1097
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	477, 884, 1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.