Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021234.1

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Reverse (-)

703 .. 3239

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021234.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgaagattgaagatgatcgtgatgatgatgacgacgacgatgattatgattttgatgacaatgatgtatatctgtctgatgacgattatttgaccatggaatctcaatttgataatgtggatttgcctcctggggtggaagcttcacttccctggttgaaggatccttctccaagtgaaaacacatcgtccactaagaagttaactatttcagatgcaccacctgtaactggtctaccatctgcagccggttcgtcatctgcttcatgcagctcagctgttccttctgaatcaagttctagtaagaacgtacaaaacagcgatgacgatagtctcatgcaaaaatttcaacaatttaagcaatttgatgttgttgaggacttctcagatcatcactatagccgaatgggattttcagatgagcagccacccaagaattgggccaagagaattcaggaagagtggaaaattttggagaaggacttacctgacactatatttgtccgggtttatgaagcaagaatggaacttctacgggcagtgattataggacccccaggcactccgtaccatgatggtctttttgtctttgattgtctcttcccaactgactatcctaattcaccaccgatggtttactactattccggtggtcttcggctaaatccaaatttgtatgattgtgggaaagtttgtctcagtcttttaggcacgtggagcggtagacagagagaaaactggatacctggggaatcaacaatgctacaagttttggtctctatacaagctcttatactgaatgcagacccctttttcaatgagcctgggtatgagacaaggtatactggagtagaagggcaaaaaaaatccaggaagtacagtgaagaggtctttattatgtctctgaagacgatgatgtatacactaaggaagccacctaagtattttgaggactttgtcttgggtcattttcgcaatcgtgcacatattattctggcagcatgtaaggcatattctgagggtacattggttgggtcttctattggagatgcagtgcagaatggagttgaaagtggctcaagtgaatttaagtcatctgtggctaggatgatgaatatgcttgttacatatttcaccagaaatggatcaacagactgtgagcagtttcgaggtgcagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

393

Amino Acids

44.22

Weight (kDa)

4.54

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	720
AccI	GTMKAC	4 cut(s)	235, 724, 842, 920
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	3 cut(s)	158, 171, 1153
AcsI	RAATTY	5 cut(s)	344, 450, 468, 670, 1085
AcuI	CTGAAG	1 cut(s)	926
AcvI	CACGTG	1 cut(s)	714
AfaI	GTAC	4 cut(s)	312, 569, 878, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	230, 438
AgsI	TTSAA	5 cut(s)	11, 160, 350, 817, 1070
AjnI	CCWGG	6 cut(s)	130, 152, 556, 745, 823, 869
AluBI	AGCT	4 cut(s)	143, 273, 278, 788
AluI	AGCT	4 cut(s)	143, 273, 278, 788
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	6 cut(s)	338, 602, 701, 781, 827, 906
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	3 cut(s)	158, 171, 1153
AoxI	GGCC	1 cut(s)	441
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	5 cut(s)	245, 270, 424, 998, 1175
ApoI	RAATTY	5 cut(s)	344, 450, 468, 670, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	2 cut(s)	441, 551
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	615, 1126
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	985
BaeI	ACNNNNGTAYC	2 cut(s)	1014, 1047
BamHI	GGATCC	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	714
BbsI	GAAGAC	3 cut(s)	647, 914, 1029
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	4 cut(s)	257, 282, 436, 1010
BccI	CCATC	3 cut(s)	247, 569, 625
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	6 cut(s)	132, 154, 558, 747, 825, 871
BciVI	GTATCC	1 cut(s)	735
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	6 cut(s)	338, 602, 701, 781, 827, 906
BfaI	CTAG	2 cut(s)	300, 1104
BfmI	CTRYAG	2 cut(s)	243, 397
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	5 cut(s)	246, 271, 425, 999, 1176
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	5 cut(s)	247, 272, 426, 1000, 1177
Bme1390I	CCNGG	7 cut(s)	132, 154, 506, 558, 747, 825, 871
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	441, 551
BmiI	GGNNCC	2 cut(s)	165, 553
BmrFI	CCNGG	7 cut(s)	132, 154, 506, 558, 747, 825, 871
BmsI	GCATC	2 cut(s)	205, 1039
BoxI	GACNNNNGTC	1 cut(s)	330
BpiI	GAAGAC	3 cut(s)	647, 914, 1029
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	867
Bpu1102I	GCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	1063
BpuMI	CCSGG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	714
BsaBI	GATNNNNATC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	781
BsaJI	CCNNGG	6 cut(s)	96, 131, 152, 556, 746, 824
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	1038, 1068
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 438
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	235, 743, 850
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	6 cut(s)	132, 154, 558, 747, 825, 871
BseDI	CCNNGG	6 cut(s)	96, 131, 152, 556, 746, 824
BseGI	GGATG	1 cut(s)	1113
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	230, 438
BseMII	CTCAG	4 cut(s)	288, 399, 712, 1008
BseNI	ACTGG	3 cut(s)	235, 743, 850
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	4 cut(s)	257, 282, 436, 1010
BsgI	GTGCAG	1 cut(s)	1076
BshFI	GGCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	3 cut(s)	249, 505, 648
BslI	CCNNNNNNNGG	2 cut(s)	230, 438
BsmAI	GTCTC	6 cut(s)	338, 602, 701, 781, 827, 906
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	4 cut(s)	16, 163, 388, 1145
Bsp1720I	GCTNAGC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	4 cut(s)	287, 398, 711, 1009
BspLI	GGNNCC	2 cut(s)	165, 553
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	158, 171, 1153
BspTNI	GGTCTC	1 cut(s)	781
BsrBI	CCGCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	235, 743, 850
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	6 cut(s)	96, 131, 152, 556, 746, 824
BssMI	GATC	4 cut(s)	16, 163, 388, 1145
BssNAI	GTATAC	2 cut(s)	843, 921
BssT1I	CCWWGG	1 cut(s)	96
Bst1107I	GTATAC	2 cut(s)	843, 921
Bst2UI	CCWGG	6 cut(s)	132, 154, 558, 747, 825, 871
Bst4CI	ACNGT	2 cut(s)	881, 1157
Bst6I	CTCTTC	3 cut(s)	453, 605, 879
BstBAI	YACGTR	1 cut(s)	714
BstDEI	CTNAG	7 cut(s)	195, 274, 385, 698, 926, 939, 1017
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	1113
BstKTI	GATC	4 cut(s)	19, 166, 391, 1148
BstMAI	GTCTC	6 cut(s)	338, 602, 701, 781, 827, 906
BstMBI	GATC	4 cut(s)	16, 163, 388, 1145
BstMWI	GCNNNNNNNGC	2 cut(s)	717, 1007
BstNI	CCWGG	6 cut(s)	132, 154, 558, 747, 825, 871
BstNSI	RCATGY	1 cut(s)	1005
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	7 cut(s)	130, 152, 504, 556, 745, 823, 869
BstSFI	CTRYAG	2 cut(s)	243, 397
BstSLI	GKGCMC	1 cut(s)	985
BstV1I	GCAGC	4 cut(s)	257, 282, 436, 1010
BstV2I	GAAGAC	3 cut(s)	647, 914, 1029
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZ17I	GTATAC	2 cut(s)	843, 921
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	1113
BtsI	GCAGTG	2 cut(s)	546, 1059
BtsIMutI	CAGTG	3 cut(s)	546, 886, 1059
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	441, 551
Csp6I	GTAC	4 cut(s)	311, 568, 877, 1023
CviAII	CATG	5 cut(s)	97, 267, 337, 572, 1002
CviQI	GTAC	4 cut(s)	311, 568, 877, 1023
DdeI	CTNAG	7 cut(s)	195, 274, 385, 698, 926, 939, 1017
DpnI	GATC	4 cut(s)	18, 165, 390, 1147
DpnII	GATC	4 cut(s)	16, 163, 388, 1145
Eam1104I	CTCTTC	3 cut(s)	453, 605, 879
EarI	CTCTTC	3 cut(s)	453, 605, 879
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	926
Eco72I	CACGTG	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	450
EcoRII	CCWGG	6 cut(s)	130, 152, 556, 745, 823, 869
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	100, 270, 340, 575, 1005
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	5 cut(s)	96, 266, 336, 571, 1001
FblI	GTMKAC	4 cut(s)	235, 724, 842, 920
Fnu4HI	GCNGC	5 cut(s)	246, 271, 425, 999, 1176
FokI	GGATG	1 cut(s)	1120
Fsp4HI	GCNGC	5 cut(s)	246, 271, 425, 999, 1176
FspBI	CTAG	2 cut(s)	300, 1104
GluI	GCNGC	5 cut(s)	246, 271, 425, 999, 1176
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	3 cut(s)	249, 505, 648
Hin1II	CATG	5 cut(s)	100, 270, 340, 575, 1005
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	3 cut(s)	101, 290, 752
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	3 cut(s)	249, 505, 648
HphI	GGTGA	2 cut(s)	615, 1126
Hpy166II	GTNNAC	8 cut(s)	192, 204, 236, 637, 725, 843, 921, 983
Hpy188I	TCNGA	7 cut(s)	79, 214, 289, 388, 418, 906, 1018
Hpy188III	TCNNGA	2 cut(s)	20, 455
Hpy8I	GTNNAC	8 cut(s)	192, 204, 236, 637, 725, 843, 921, 983
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	5 cut(s)	154, 177, 294, 472, 848
HpyCH4III	ACNGT	2 cut(s)	881, 1157
HpyCH4IV	ACGT	2 cut(s)	309, 713
HpyCH4V	TGCA	9 cut(s)	218, 245, 270, 340, 803, 983, 1052, 1057, 1175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	717, 1007
HpyF3I	CTNAG	7 cut(s)	195, 274, 385, 698, 926, 939, 1017
HpySE526I	ACGT	2 cut(s)	309, 713
Hsp92II	CATG	5 cut(s)	100, 270, 340, 575, 1005
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	16, 163, 388, 1145
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	4 cut(s)	257, 282, 436, 1010
LweI	GCATC	2 cut(s)	205, 1039
MaeI	CTAG	2 cut(s)	300, 1104
MaeII	ACGT	2 cut(s)	309, 713
MaeIII	GTNAC	2 cut(s)	226, 1123
MalI	GATC	4 cut(s)	18, 165, 390, 1147
MbiI	CCGCTC	1 cut(s)	720
MboI	GATC	4 cut(s)	16, 163, 388, 1145
MboII	GAAGA	8 cut(s)	16, 23, 470, 592, 647, 896, 919, 1029
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	985
MnlI	CCTC	6 cut(s)	138, 370, 880, 943, 1012, 1163
MseI	TTAA	3 cut(s)	203, 357, 1089
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	249, 505, 648
MspR9I	CCNGG	7 cut(s)	132, 154, 506, 558, 747, 825, 871
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	6 cut(s)	132, 154, 558, 747, 825, 871
MwoI	GCNNNNNNNGC	2 cut(s)	717, 1007
NciI	CCSGG	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	4 cut(s)	16, 163, 388, 1145
NlaIII	CATG	5 cut(s)	100, 270, 340, 575, 1005
NlaIV	GGNNCC	2 cut(s)	165, 553
NspI	RCATGY	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	3 cut(s)	101, 290, 752
PflFI	GACNNNGTC	1 cut(s)	956
PflMI	CCANNNNNTGG	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	869
PkrI	GCNGC	5 cut(s)	247, 272, 426, 1000, 1177
PmaCI	CACGTG	1 cut(s)	714
PmlI	CACGTG	1 cut(s)	714
Ppu21I	YACGTR	1 cut(s)	714
PpuMI	RGGWCCY	1 cut(s)	551
PshAI	GACNNNNGTC	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	6 cut(s)	130, 152, 556, 745, 823, 869
PspCI	CACGTG	1 cut(s)	714
PspGI	CCWGG	6 cut(s)	130, 152, 556, 745, 823, 869
PspN4I	GGNNCC	2 cut(s)	165, 553
PspPI	GGNCC	2 cut(s)	441, 551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	956
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	4 cut(s)	312, 569, 878, 1024
RsaNI	GTAC	4 cut(s)	311, 568, 877, 1023
SaqAI	TTAA	3 cut(s)	203, 357, 1089
SatI	GCNGC	5 cut(s)	246, 271, 425, 999, 1176
Sau3AI	GATC	4 cut(s)	16, 163, 388, 1145
Sau96I	GGNCC	2 cut(s)	441, 551
ScrFI	CCNGG	7 cut(s)	132, 154, 506, 558, 747, 825, 871
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	2 cut(s)	205, 1039
SfcI	CTRYAG	2 cut(s)	243, 397
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	1078
SmoI	CTYRAG	1 cut(s)	1078
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	2 cut(s)	300, 1104
StyD4I	CCNGG	7 cut(s)	130, 152, 504, 556, 745, 823, 869
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	881, 1157
TaiI	ACGT	2 cut(s)	312, 716
TaqI	TCGA	1 cut(s)	1168
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	3 cut(s)	101, 290, 752
Tru1I	TTAA	3 cut(s)	203, 357, 1089
Tru9I	TTAA	3 cut(s)	203, 357, 1089
TscAI	CASTG	3 cut(s)	546, 886, 1059
TseI	GCWGC	5 cut(s)	245, 270, 424, 998, 1175
TspDTI	ATGAA	4 cut(s)	17, 255, 528, 1127
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	3 cut(s)	546, 886, 1059
Tth111I	GACNNNGTC	1 cut(s)	956
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	5 cut(s)	344, 450, 468, 670, 1085
XceI	RCATGY	1 cut(s)	1005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XmiI	GTMKAC	4 cut(s)	235, 724, 842, 920
XspI	CTAG	2 cut(s)	300, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.