Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Reverse (-)

27788535 .. 27789197

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTATAATTTCAGACTTCCAAGAAGAACAAAACCAAACCGAAACCAAAGTCACCACACCACCCTCTGAGTCATCATCATCGCTCAAGGCAGAAGAGAAAAAGGTCAAGGTGGAGGAGGACAAAGGGAAAGGCTCGAAATTAGTTCCGAACAAAGGGAATGGGCTTGATCTGGAAAAGTACTCATGGACACAGAGCCTGCAAGAGGTTAATATAGTGATCCCAGTGCCTGCCGGAACTAAATCAAGGGATATTGTGTACGAGGCAAAGGCGAAGCATCTCAAGTTTGGACTCAAGGGTCAGCCAGCTCCTATTATCGACGGTGATCTGTTTCAGTCTATCAAGCCCGATGAGTGTTTGTGGAGCATAGAGGATCAGAGTGCTGTCTCTATTCTCTTGACCAAGCAAAACCAAACGGACTGGTGGAAGTCTTTGTTGAAAGGCGATCCGGAGATTGACACTCAAAAGGTTGAACCTGAGCCCAGCAAACTGTCCGACCTGGATTCCGAGACGCGCCGGACGGTTGAGAAGATGATGTTTGATCAGAGGCAGAAGCAGATGGGGCGTCCGACTAGTGATGAGATGCAGCAGCAGGAGTTGTTGAAGAAGTTCATGGAACAGAATCCGAACATGGACTTTTCAAAGGTTAAGATGATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

220

Amino Acids

25.06

Weight (kDa)

5.21

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	59 - 135	7.4e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	3 cut(s)	214, 381, 440
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	2 cut(s)	182, 260
AfiI	CCNNNNNNNGG	2 cut(s)	155, 205
AgsI	TTSAA	4 cut(s)	439, 473, 604, 642
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	391, 503
AlwI	GGATC	3 cut(s)	214, 381, 440
AlwNI	CAGNNNCTG	2 cut(s)	199, 230
Aor13HI	TCCGGA	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	586, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	46, 335
BanII	GRGCYC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	598, 601
BccI	CCATC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	391, 503
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BisI	GCNGC	2 cut(s)	587, 590
BlsI	GCNGC	2 cut(s)	588, 591
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	500
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	286, 573, 645
BmuI	ACTGGG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	3 cut(s)	71, 266, 278
BsaHI	GRCGYC	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 205
Bse1I	ACTGG	2 cut(s)	224, 425
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	155, 205
BseMII	CTCAG	2 cut(s)	60, 468
BseNI	ACTGG	2 cut(s)	224, 425
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	598, 601
BseYI	CCCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	514
BsiSI	CCGG	3 cut(s)	234, 449, 517
BslI	CCNNNNNNNGG	2 cut(s)	155, 205
BsmAI	GTCTC	2 cut(s)	391, 503
BsmBI	CGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BspCNI	CTCAG	2 cut(s)	61, 469
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	514
BspPI	GGATC	3 cut(s)	214, 381, 440
BsrI	ACTGG	2 cut(s)	224, 425
BssMI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BssNI	GRCGYC	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	323, 492, 523
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	200, 231, 306
BstDEI	CTNAG	2 cut(s)	69, 477
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
BstMAI	GTCTC	2 cut(s)	391, 503
BstMBI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	598, 601
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	200, 231, 306
CaiI	CAGNNNCTG	2 cut(s)	199, 230
CfoI	GCGC	1 cut(s)	516
CseI	GACGC	2 cut(s)	520, 554
Csp6I	GTAC	2 cut(s)	181, 259
CviAII	CATG	3 cut(s)	186, 613, 631
CviJI	RGCY	8 cut(s)	5, 135, 166, 198, 304, 308, 346, 481
CviKI_1	RGCY	8 cut(s)	5, 135, 166, 198, 304, 308, 346, 481
CviQI	GTAC	2 cut(s)	181, 259
DdeI	CTNAG	2 cut(s)	69, 477
DpnI	GATC	6 cut(s)	171, 221, 327, 375, 447, 543
DpnII	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	3 cut(s)	189, 616, 634
FaiI	YATR	6 cut(s)	8, 187, 215, 368, 614, 632
FatI	CATG	3 cut(s)	185, 612, 630
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	587, 590
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	587, 590
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	587, 590
GsaI	CCCAGC	1 cut(s)	486
HapII	CCGG	3 cut(s)	234, 449, 517
HgaI	GACGC	2 cut(s)	520, 554
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	189, 616, 634
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	4 cut(s)	71, 291, 503, 622
HpaII	CCGG	3 cut(s)	234, 449, 517
HphI	GGTGA	2 cut(s)	46, 335
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	9 cut(s)	16, 70, 150, 378, 496, 508, 546, 570, 627
Hpy188III	TCNNGA	3 cut(s)	173, 397, 449
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	323, 492, 523
HpyCH4V	TGCA	3 cut(s)	202, 586, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	69, 477
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	3 cut(s)	189, 616, 634
HspAI	GCGC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
LmnI	GCTCC	2 cut(s)	313, 363
Lsp1109I	GCAGC	2 cut(s)	598, 601
LweI	GCATC	3 cut(s)	286, 573, 645
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	171, 221, 327, 375, 447, 543
MboI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
MboII	GAAGA	4 cut(s)	38, 107, 541, 616
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	2 cut(s)	9, 140
MlyI	GAGTC	2 cut(s)	80, 285
MmeI	TCCRAC	2 cut(s)	519, 593
MnlI	CCTC	7 cut(s)	76, 109, 112, 199, 256, 364, 540
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	2 cut(s)	210, 648
MspI	CCGG	3 cut(s)	234, 449, 517
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
NlaIII	CATG	3 cut(s)	189, 616, 634
NmuCI	GTSAC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	503, 622
PkrI	GCNGC	2 cut(s)	588, 591
PleI	GAGTC	2 cut(s)	79, 285
PpsI	GAGTC	2 cut(s)	79, 285
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	498
PstNI	CAGNNNCTG	2 cut(s)	199, 230
RsaI	GTAC	2 cut(s)	182, 260
RsaNI	GTAC	2 cut(s)	181, 259
SaqAI	TTAA	2 cut(s)	210, 648
SatI	GCNGC	2 cut(s)	587, 590
Sau3AI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	80, 285
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	8 cut(s)	108, 114, 210, 310, 471, 478, 501, 648
SfaNI	GCATC	3 cut(s)	286, 573, 645
SmlI	CTYRAG	3 cut(s)	86, 281, 293
SmoI	CTYRAG	3 cut(s)	86, 281, 293
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	2 cut(s)	9, 140
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	323, 492, 523
TaqI	TCGA	2 cut(s)	137, 318
TasI	AATT	2 cut(s)	9, 140
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	503, 622
Tru1I	TTAA	2 cut(s)	210, 648
Tru9I	TTAA	2 cut(s)	210, 648
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	586, 589
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	601
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.