Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Forward (+)

27821594 .. 27823081

Gene Structure 1488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGGAAACATCTTTGCCACCTGTTTTACCTGTAAACAAAAGAGTGGTTCTTCAGCTGACAGAATCAGTGATCTCCCAGATGATATATTGCATGTCATACTCTCATTCTTACCTTTCAAATCCGTTGGGCAAACAGCTATCTTATCTCGAAGATGGAATGATGTATGGTCTTCCTATCCCATCATCGACTTCTACGAGATTTTTACTGGTAGTGAAGCTGATCATCACCAGACAAAAACAAGGATCATCAACACAATATTAGCTCGCCATGAAGAAAACTATAATATACTGTACCCATGCCGCAAAATTTCCTTGCCAAGAGTGGGGGGGGATCCGAACAAATCTTGTTTGTCAAGGGTTGAGGAACTTGTACTCGACATCAGGTTGAGTTCTGGAAACACATCTGATTTGCATCAATGTCAACTCATGTGCCACTCATTAAGGAGTAGTAGCTGTGGGAATTCAAAGGCATGGCTAGGGTTTCCCTCGTCTTATGTTGTCGGGTCTTATCTCCGTTCACTTCATACTTTGTCTCTAACTCGTGTGGATTTCTTGGATAGTAGTGCTTTGGGTGTGGATTTATTTTCTGGTTCTTCATTCCCTTATCTTGAAAAGTTGAACTTAGAGCGCTGTAGAGGAAGGAGTGATCTCAAAATTTGCTGTCCAAACCTAAAACATATAAGGGTATTTGATATGGAATTAAATAGTCTGGACATCTCCGGAATGAGACTGGAGGAGTTGCGAGTCTGGTTTTGTTTTCAAGAGTGCATCAATGGAAGTTGGATCAACATTTTTGCACCGAATCTACAATCATTTTTTTGGCGTTATTCAGGCATTACTGAGAGGTGTTCGATCCAGAGCTTTCCTATGCTCAAAAGATCTTTCATAAGTTCCCCCCTTACAACGAAGAAGATAAATAATAACAGTGTTGTCGATGTTCTTTCCGCTTCATCCCAAGTTGAAGACTTCGAAATATCCCATGACTACCTCCAGATTCTATCAGAAATATATTTTGAATTCGGCGGTCTACCGTTCTCATTTATGAAACTGAAAACCTTGAGAATTTGGAGTCCAATAAAGCAAAGATATATCCCAGGTATGGCATGCCTGTTCAAGAGCTCTCCCGTGGTCCACACCCTCGAGATTTATTTTTACTCTTACGAAGAAAATGGCAAGTGGAACAACCAATCCTTGGATGATGCCAATTGCACCCAAGAACAATACTGGGAGACTCAGGGTCAATATTTGAGCCCCTCTCTTAGTCACCTAAAGGTGGTCAGAATTAGCCTTGGTGAAATGATCCCCGAGAGTGCAATCAAATTTGCAAAGTTTGTGCTCAAATATGGAAGACACCTGCAAAAAATGAGTGTTAGCTTTCATATGAGCAAAAGTTGTCTACCTCCCAATTCGCTGAGTGATACCATTGCTTTAATAAAGAGTTTCCGCCGGGCATCTGCATATGTCAAATTCTCAACTCTTTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

495

Amino Acids

56.62

Weight (kDa)

8.56

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 60	1.8e-09	F-box domain
F-box-like	PF12937	22 - 55	7.3e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1362
Acc36I	ACCTGC	1 cut(s)	1362
AccB7I	CCANNNNNTGG	1 cut(s)	1192
AccI	GTMKAC	2 cut(s)	1027, 1396
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	4 cut(s)	301, 945, 1023, 1444
AclWI	GGATC	6 cut(s)	251, 326, 339, 791, 847, 1294
AcsI	RAATTY	7 cut(s)	306, 460, 654, 1016, 1062, 1319, 1466
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	293, 372
AfeI	AGCGCT	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	323, 1099, 1192, 1273
AgsI	TTSAA	8 cut(s)	118, 465, 611, 619, 761, 962, 1016, 1114
AhdI	GACNNNNNGTC	1 cut(s)	1236
AjnI	CCWGG	1 cut(s)	1093
AloI	GAACNNNNNNTCC	2 cut(s)	1172, 1204
AluBI	AGCT	8 cut(s)	56, 137, 218, 263, 453, 861, 1119, 1374
AluI	AGCT	8 cut(s)	56, 137, 218, 263, 453, 861, 1119, 1374
Alw21I	GWGCWC	2 cut(s)	1121, 1338
Alw26I	GTCTC	3 cut(s)	537, 721, 1223
AlwI	GGATC	6 cut(s)	251, 326, 339, 791, 847, 1294
Ama87I	CYCGRG	2 cut(s)	1139, 1304
Aor13HI	TCCGGA	1 cut(s)	719
Aor51HI	AGCGCT	1 cut(s)	629
ApoI	RAATTY	7 cut(s)	306, 460, 654, 1016, 1062, 1319, 1466
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	1129
AsuC2I	CCSGG	1 cut(s)	1448
AsuHPI	GGTGA	3 cut(s)	218, 1256, 1304
AsuII	TTCGAA	1 cut(s)	969
AvaI	CYCGRG	2 cut(s)	1139, 1304
AvaII	GGWCC	1 cut(s)	1129
BamHI	GGATCC	1 cut(s)	331
BanII	GRGCYC	2 cut(s)	1121, 1253
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	3 cut(s)	162, 969, 1354
Bbv12I	GWGCWC	2 cut(s)	1121, 1338
BccI	CCATC	2 cut(s)	147, 188
BciT130I	CCWGG	1 cut(s)	1095
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	1448
BcoDI	GTCTC	3 cut(s)	537, 721, 1223
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	631
BfoI	RGCGCY	1 cut(s)	631
BfuAI	ACCTGC	1 cut(s)	1362
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	1095, 1448
Bme18I	GGWCC	1 cut(s)	1129
BmeRI	GACNNNNNGTC	1 cut(s)	1236
BmeT110I	CYCGRG	2 cut(s)	1139, 1304
BmgT120I	GGNCC	1 cut(s)	1129
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	1095, 1448
BmrI	ACTGGG	1 cut(s)	1234
BmsI	GCATC	4 cut(s)	421, 777, 1189, 1460
BmuI	ACTGGG	1 cut(s)	1234
BpiI	GAAGAC	3 cut(s)	162, 969, 1354
BplI	GAGNNNNNCTC	2 cut(s)	1240, 1272
BpmI	CTGGAG	2 cut(s)	752, 974
Bpu14I	TTCGAA	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	1078
BpuMI	CCSGG	1 cut(s)	1448
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	1093, 1125, 1191, 1288
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 1099, 1192, 1273
Bse1I	ACTGG	3 cut(s)	211, 735, 1229
Bse3DI	GCAATG	1 cut(s)	1422
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	1095
BseDI	CCNNGG	4 cut(s)	1093, 1125, 1191, 1288
BseGI	GGATG	2 cut(s)	950, 1201
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	323, 1099, 1192, 1273
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	3 cut(s)	831, 1247, 1403
BseNI	ACTGG	3 cut(s)	211, 735, 1229
BseRI	GAGGAG	1 cut(s)	749
BsiHKAI	GWGCWC	2 cut(s)	1121, 1338
BsiHKCI	CYCGRG	2 cut(s)	1139, 1304
BsiSI	CCGG	2 cut(s)	720, 1447
BslI	CCNNNNNNNGG	4 cut(s)	323, 1099, 1192, 1273
BsmAI	GTCTC	3 cut(s)	537, 721, 1223
BsoBI	CYCGRG	2 cut(s)	1139, 1304
Bsp119I	TTCGAA	1 cut(s)	969
Bsp1286I	GDGCHC	3 cut(s)	1121, 1253, 1338
Bsp13I	TCCGGA	1 cut(s)	719
Bsp143I	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
BspACI	CCGC	4 cut(s)	301, 945, 1023, 1444
BspCNI	CTCAG	3 cut(s)	832, 1246, 1404
BspEI	TCCGGA	1 cut(s)	719
BspLI	GGNNCC	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	1362
BspPI	GGATC	6 cut(s)	251, 326, 339, 791, 847, 1294
BspT104I	TTCGAA	1 cut(s)	969
BsrDI	GCAATG	1 cut(s)	1422
BsrI	ACTGG	3 cut(s)	211, 735, 1229
BssECI	CCNNGG	4 cut(s)	1093, 1125, 1191, 1288
BssMI	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	1191, 1288
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	1095
Bst4CI	ACNGT	3 cut(s)	291, 926, 1032
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	2 cut(s)	265, 1105
BstDEI	CTNAG	5 cut(s)	622, 840, 1233, 1259, 1412
BstDSI	CCRYGG	1 cut(s)	1125
BstF5I	GGATG	2 cut(s)	950, 1201
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	9 cut(s)	73, 223, 246, 334, 649, 786, 855, 881, 1302
BstMAI	GTCTC	3 cut(s)	537, 721, 1223
BstMBI	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
BstNI	CCWGG	1 cut(s)	1095
BstNSI	RCATGY	2 cut(s)	95, 1107
BstSCI	CCNGG	2 cut(s)	1093, 1446
BstSFI	CTRYAG	1 cut(s)	631
BstV2I	GAAGAC	3 cut(s)	162, 969, 1354
BstX2I	RGATCY	2 cut(s)	331, 878
BstYI	RGATCY	2 cut(s)	331, 878
BtgI	CCRYGG	1 cut(s)	1125
BtsCI	GGATG	2 cut(s)	950, 1201
BtsIMutI	CAGTG	2 cut(s)	73, 931
BveI	ACCTGC	1 cut(s)	1362
Cac8I	GCNNGC	2 cut(s)	265, 1105
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	1129
Csp6I	GTAC	2 cut(s)	292, 371
CviAII	CATG	7 cut(s)	92, 269, 297, 427, 471, 980, 1104
CviQI	GTAC	2 cut(s)	292, 371
DdeI	CTNAG	5 cut(s)	622, 840, 1233, 1259, 1412
DpnI	GATC	9 cut(s)	72, 222, 245, 333, 648, 785, 854, 880, 1301
DpnII	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
DriI	GACNNNNNGTC	1 cut(s)	1236
Eam1105I	GACNNNNNGTC	1 cut(s)	1236
EciI	GGCGGA	1 cut(s)	1433
Ecl136II	GAGCTC	1 cut(s)	1119
Eco130I	CCWWGG	2 cut(s)	1191, 1288
Eco24I	GRGCYC	2 cut(s)	1121, 1253
Eco47I	GGWCC	1 cut(s)	1129
Eco47III	AGCGCT	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	1119
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	2 cut(s)	1139, 1304
EcoICRI	GAGCTC	1 cut(s)	1119
EcoRI	GAATTC	2 cut(s)	460, 1016
EcoRII	CCWGG	1 cut(s)	1093
EcoT14I	CCWWGG	2 cut(s)	1191, 1288
EcoT38I	GRGCYC	2 cut(s)	1121, 1253
ErhI	CCWWGG	2 cut(s)	1191, 1288
FaeI	CATG	7 cut(s)	95, 272, 300, 430, 474, 983, 1107
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	7 cut(s)	91, 268, 296, 426, 470, 979, 1103
FauNDI	CATATG	2 cut(s)	1380, 1459
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	1027, 1396
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	937, 1208
FriOI	GRGCYC	2 cut(s)	1121, 1253
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	752, 974
HaeII	RGCGCY	1 cut(s)	631
HapII	CCGG	2 cut(s)	720, 1447
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	7 cut(s)	95, 272, 300, 430, 474, 983, 1107
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HinfI	GANTC	6 cut(s)	63, 744, 802, 994, 1069, 1231
HpaII	CCGG	2 cut(s)	720, 1447
HphI	GGTGA	3 cut(s)	218, 1256, 1304
Hpy166II	GTNNAC	6 cut(s)	35, 422, 518, 1028, 1132, 1397
Hpy188I	TCNGA	4 cut(s)	336, 406, 1003, 1280
Hpy8I	GTNNAC	6 cut(s)	35, 422, 518, 1028, 1132, 1397
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	3 cut(s)	291, 926, 1032
HpyCH4V	TGCA	9 cut(s)	91, 412, 768, 797, 1209, 1313, 1325, 1357, 1457
HpyF3I	CTNAG	5 cut(s)	622, 840, 1233, 1259, 1412
Hsp92II	CATG	7 cut(s)	95, 272, 300, 430, 474, 983, 1107
HspAI	GCGC	1 cut(s)	628
Kpn2I	TCCGGA	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
LweI	GCATC	4 cut(s)	421, 777, 1189, 1460
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	1262
MalI	GATC	9 cut(s)	72, 222, 245, 333, 648, 785, 854, 880, 1301
MboI	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
MfeI	CAATTG	1 cut(s)	1204
MflI	RGATCY	2 cut(s)	331, 878
MhlI	GDGCHC	3 cut(s)	1121, 1253, 1338
MlyI	GAGTC	3 cut(s)	753, 1078, 1225
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	9 cut(s)	355, 496, 629, 727, 837, 998, 1148, 1264, 1410
MroI	TCCGGA	1 cut(s)	719
MseI	TTAA	3 cut(s)	440, 701, 1430
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	720, 1447
MspR9I	CCNGG	2 cut(s)	1095, 1448
MunI	CAATTG	1 cut(s)	1204
MvaI	CCWGG	1 cut(s)	1095
NciI	CCSGG	1 cut(s)	1448
NdeI	CATATG	2 cut(s)	1380, 1459
NdeII	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
NlaIII	CATG	7 cut(s)	95, 272, 300, 430, 474, 983, 1107
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	1262
NspI	RCATGY	2 cut(s)	95, 1107
NspV	TTCGAA	1 cut(s)	969
PaeI	GCATGC	1 cut(s)	1107
PaeR7I	CTCGAG	1 cut(s)	1139
PaqCI	CACCTGC	1 cut(s)	1362
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	63, 802, 994
PflMI	CCANNNNNTGG	1 cut(s)	1192
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	3 cut(s)	752, 1077, 1225
PpsI	GAGTC	3 cut(s)	752, 1077, 1225
Psp124BI	GAGCTC	1 cut(s)	1121
Psp6I	CCWGG	1 cut(s)	1093
PspGI	CCWGG	1 cut(s)	1093
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	1129
PsuI	RGATCY	2 cut(s)	331, 878
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	293, 372
RsaNI	GTAC	2 cut(s)	292, 371
SacI	GAGCTC	1 cut(s)	1121
SaqAI	TTAA	3 cut(s)	440, 701, 1430
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	9 cut(s)	70, 220, 243, 331, 646, 783, 852, 878, 1299
Sau96I	GGNCC	1 cut(s)	1129
SchI	GAGTC	3 cut(s)	753, 1078, 1225
ScrFI	CCNGG	2 cut(s)	1095, 1448
SduI	GDGCHC	3 cut(s)	1121, 1253, 1338
SfaNI	GCATC	4 cut(s)	421, 777, 1189, 1460
SfcI	CTRYAG	1 cut(s)	631
Sfr274I	CTCGAG	1 cut(s)	1139
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	1 cut(s)	1129
SlaI	CTCGAG	1 cut(s)	1139
SmlI	CTYRAG	2 cut(s)	1057, 1139
SmoI	CTYRAG	2 cut(s)	1057, 1139
SphI	GCATGC	1 cut(s)	1107
SsiI	CCGC	4 cut(s)	301, 945, 1023, 1444
SspI	AATATT	2 cut(s)	258, 1244
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	1121
StyD4I	CCNGG	2 cut(s)	1093, 1446
StyI	CCWWGG	2 cut(s)	1191, 1288
TaaI	ACNGT	3 cut(s)	291, 926, 1032
TaqI	TCGA	7 cut(s)	148, 186, 375, 851, 933, 969, 1140
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	63, 802, 994
Tru1I	TTAA	3 cut(s)	440, 701, 1430
Tru9I	TTAA	3 cut(s)	440, 701, 1430
TscAI	CASTG	2 cut(s)	73, 931
TseFI	GTSAC	1 cut(s)	1262
Tsp45I	GTSAC	1 cut(s)	1262
TspDTI	ATGAA	7 cut(s)	285, 512, 585, 874, 939, 1058, 1367
TspGWI	ACGGA	2 cut(s)	112, 503
TspRI	CASTG	2 cut(s)	73, 931
Van91I	CCANNNNNTGG	1 cut(s)	1192
VpaK11BI	GGWCC	1 cut(s)	1129
XapI	RAATTY	7 cut(s)	306, 460, 654, 1016, 1062, 1319, 1466
XceI	RCATGY	2 cut(s)	95, 1107
XhoI	CTCGAG	1 cut(s)	1139
XmiI	GTMKAC	2 cut(s)	1027, 1396
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.