Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Reverse (-)

27824898 .. 27827182

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0263900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGACGTTAGTGAGAAACAAACAGGTGATATTGAGGAACTATGTCACCACTTTTCCGAAAGATTCGGACTTGTATGTGACCAGCACTACTGCTAGTGTCAAGTTCAAGCTTCCTGCTCACACTATCATTACCACTTCAAAGGAACCAGCCGTCATAGTGAAGAACCTCTACTTGTCTTGCGATCCCTACCAGCGGCTCTTTATGGAAAAAATCCCAGGAGTCGACGAATCTACGTATAGTCAGCGAGTCTACTATACACCCGGCTCGCCAATATATGGGTATGGAGTGGCTGAAGTGTTGGACTCACACCACCCAAATTTTAAGGCAGGTGACTTAGTTTGGGGGACTACTAATTGGGAGCAATACAGCCTTATCACTACACCCAAAAGCCTCATCAAAATCCAGCACACTGATACTGATGTACCCCTTTCCTACTATGCTGGAATTCTTGGTACAACTGGTTTGACCGCTTACGTTGGTTTCTATGAATTCTGTTCTCCGAAGAAAGGAGAAAATGTGTTTGTTTCAGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGCCAAATTGCTAAACTAATGGGTTGTTATGTTGTTGGAAGTGCTGGTACTAAGCAAAAGATTGATCTATTGAAGAGCAAGTTCGGATTTGATGACGCTTTTAACTATAAGGAAGAGAGTGACTTGGATGTGGCTTTGAAAAGGTATTTTCCTGAAGGCATTGATATATACTTTGACAATGTTGGCGGCAAAATGCTGGATGCGGTCTTCCTCAACATGAGTGTCCATGGCCGAATTGCTGGTTGTGGAATGATTTCACAGTACAATCTTGATCAGCCAGAAGGGGTGACCAATTTGATGCACCTTGTGTACAAGCGTATACGCTTCCATGGATTTACCGTTCGTGATCACTATCATCTGCATCCCAAATTCTTAGACTTCATTCTGCCTTACATTCAACAAGGGAAGATCGCTTATATAGAAGACATCGTTGAAGGCCTTGAGAATGCTCCAGCAGCACTGTTTGGACTTTTTAAGGGTCACAACATTGGAAAACAAGTAGTTGCAGTTGATCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

359

Amino Acids

40.08

Weight (kDa)

6.63

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	32 - 132	8.2e-17	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	181 - 313	5e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	215 - 354	2.4e-08	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccI	GTMKAC	3 cut(s)	222, 249, 877
AciI	CCGC	4 cut(s)	193, 468, 744, 761
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	2 cut(s)	559, 787
AcsI	RAATTY	4 cut(s)	316, 444, 488, 926
AcuI	CTGAAG	2 cut(s)	312, 732
AdeI	CACNNNGTG	1 cut(s)	865
AfaI	GTAC	5 cut(s)	423, 454, 607, 821, 869
AfiI	CCNNNNNNNGG	3 cut(s)	192, 275, 506
AgsI	TTSAA	6 cut(s)	106, 138, 631, 697, 956, 992
AjnI	CCWGG	1 cut(s)	214
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	3 cut(s)	109, 536, 553
AluI	AGCT	3 cut(s)	109, 536, 553
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	559, 787, 994
ApeKI	GCWGC	3 cut(s)	530, 533, 1013
ApoI	RAATTY	4 cut(s)	316, 444, 488, 926
Asp700I	GAANNNNTTC	1 cut(s)	811
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	4 cut(s)	37, 37, 341, 856
BaeI	ACNNNNGTAYC	4 cut(s)	405, 405, 438, 438
BalI	TGGCCA	1 cut(s)	561
BarI	GAAGNNNNNNTAC	4 cut(s)	152, 184, 589, 621
BbsI	GAAGAC	2 cut(s)	757, 987
BbvI	GCAGC	3 cut(s)	542, 545, 1025
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	3 cut(s)	829, 904, 1069
BcnI	CCSGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	5 cut(s)	194, 531, 534, 745, 1014
BlsI	GCNGC	5 cut(s)	195, 532, 535, 746, 1015
Bme1390I	CCNGG	2 cut(s)	216, 261
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	216, 261
BmsI	GCATC	3 cut(s)	748, 846, 928
BpiI	GAAGAC	2 cut(s)	757, 987
BpmI	CTGGAG	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	1019
BpuMI	CCSGG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	214, 784, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 275, 506
Bse1I	ACTGG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	214, 784, 886
BseGI	GGATG	3 cut(s)	691, 763, 919
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	3 cut(s)	192, 275, 506
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	542, 545, 1025
BshFI	GGCC	3 cut(s)	561, 789, 996
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	192, 275, 506
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	3 cut(s)	561, 789, 996
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
Bsp19I	CCATGG	2 cut(s)	784, 886
BspACI	CCGC	4 cut(s)	193, 468, 744, 761
BspANI	GGCC	3 cut(s)	561, 789, 996
BspHI	TCATGA	1 cut(s)	1072
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	626
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	214, 784, 886
BssMI	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
BssNAI	GTATAC	1 cut(s)	878
BssT1I	CCWWGG	2 cut(s)	784, 886
Bst1107I	GTATAC	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	3 cut(s)	819, 898, 1020
Bst6I	CTCTTC	2 cut(s)	626, 666
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	867
BstBAI	YACGTR	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	334, 609, 931
BstDSI	CCRYGG	2 cut(s)	784, 886
BstEII	GGTNACC	1 cut(s)	844
BstF5I	GGATG	3 cut(s)	691, 763, 919
BstKTI	GATC	6 cut(s)	184, 625, 832, 907, 969, 1072
BstMBI	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 1013
BstNI	CCWGG	1 cut(s)	216
BstPI	GGTNACC	1 cut(s)	844
BstSCI	CCNGG	2 cut(s)	214, 259
BstSNI	TACGTA	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	542, 545, 1025
BstV2I	GAAGAC	2 cut(s)	757, 987
BstZ17I	GTATAC	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	561, 789, 996
BtgI	CCRYGG	2 cut(s)	784, 886
BtsCI	GGATG	3 cut(s)	691, 763, 919
BtsIMutI	CAGTG	2 cut(s)	408, 1016
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	1 cut(s)	1072
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	5 cut(s)	422, 453, 606, 820, 868
CviAII	CATG	4 cut(s)	775, 785, 887, 1073
CviQI	GTAC	5 cut(s)	422, 453, 606, 820, 868
DdeI	CTNAG	3 cut(s)	334, 609, 931
DpnI	GATC	6 cut(s)	183, 624, 831, 906, 968, 1071
DpnII	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
DraIII	CACNNNGTG	1 cut(s)	865
EaeI	YGGCCR	2 cut(s)	559, 787
Eam1104I	CTCTTC	2 cut(s)	626, 666
EarI	CTCTTC	2 cut(s)	626, 666
Eco105I	TACGTA	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	784, 886
Eco147I	AGGCCT	1 cut(s)	996
Eco57I	CTGAAG	2 cut(s)	312, 732
Eco91I	GGTNACC	1 cut(s)	844
EcoO65I	GGTNACC	1 cut(s)	844
EcoRI	GAATTC	2 cut(s)	444, 488
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	784, 886
ErhI	CCWWGG	2 cut(s)	784, 886
FaeI	CATG	4 cut(s)	778, 788, 890, 1076
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	774, 784, 886, 1072
FbaI	TGATCA	3 cut(s)	829, 904, 1069
FblI	GTMKAC	3 cut(s)	222, 249, 877
Fnu4HI	GCNGC	5 cut(s)	194, 531, 534, 745, 1014
FokI	GGATG	3 cut(s)	698, 770, 906
Fsp4HI	GCNGC	5 cut(s)	194, 531, 534, 745, 1014
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	5 cut(s)	194, 531, 534, 745, 1014
GsuI	CTGGAG	1 cut(s)	993
HaeIII	GGCC	3 cut(s)	561, 789, 996
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	4 cut(s)	778, 788, 890, 1076
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	5 cut(s)	62, 219, 227, 246, 302
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	4 cut(s)	37, 37, 341, 856
Hpy166II	GTNNAC	4 cut(s)	223, 250, 868, 878
Hpy188I	TCNGA	4 cut(s)	57, 67, 501, 644
Hpy188III	TCNNGA	4 cut(s)	710, 827, 902, 1073
Hpy8I	GTNNAC	4 cut(s)	223, 250, 868, 878
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	707, 833, 986
HpyCH4III	ACNGT	3 cut(s)	819, 898, 1020
HpyCH4IV	ACGT	3 cut(s)	5, 233, 474
HpyCH4V	TGCA	3 cut(s)	859, 919, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 1013
HpyF3I	CTNAG	3 cut(s)	334, 609, 931
HpySE526I	ACGT	3 cut(s)	5, 233, 474
Hsp92II	CATG	4 cut(s)	778, 788, 890, 1076
Ksp22I	TGATCA	3 cut(s)	829, 904, 1069
Kzo9I	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	2 cut(s)	358, 1012
Lsp1109I	GCAGC	3 cut(s)	542, 545, 1025
LweI	GCATC	3 cut(s)	748, 846, 928
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	3 cut(s)	5, 233, 474
MaeIII	GTNAC	6 cut(s)	43, 76, 329, 677, 844, 1037
MalI	GATC	6 cut(s)	183, 624, 831, 906, 968, 1071
MboI	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
MboII	GAAGA	7 cut(s)	172, 514, 643, 683, 757, 976, 992
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	8 cut(s)	316, 352, 444, 488, 564, 792, 850, 926
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	3 cut(s)	228, 255, 296
MmeI	TCCRAC	2 cut(s)	279, 574
MnlI	CCTC	4 cut(s)	27, 176, 401, 779
Mox20I	TGGCCA	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	3 cut(s)	321, 660, 1032
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	2 cut(s)	193, 536
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	216, 261
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	539, 1013
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	2 cut(s)	784, 886
NdeII	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
NlaIII	CATG	4 cut(s)	778, 788, 890, 1076
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	6 cut(s)	43, 76, 329, 677, 844, 1037
PagI	TCATGA	1 cut(s)	1072
PaqCI	CACCTGC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	996
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	62, 227
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	195, 532, 535, 746, 1015
PleI	GAGTC	3 cut(s)	227, 254, 296
PpsI	GAGTC	3 cut(s)	227, 254, 296
Ppu21I	YACGTR	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	5 cut(s)	423, 454, 607, 821, 869
RsaNI	GTAC	5 cut(s)	422, 453, 606, 820, 868
SalI	GTCGAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	3 cut(s)	321, 660, 1032
SatI	GCNGC	5 cut(s)	194, 531, 534, 745, 1014
Sau3AI	GATC	6 cut(s)	181, 622, 829, 904, 966, 1069
SchI	GAGTC	3 cut(s)	228, 255, 296
ScrFI	CCNGG	2 cut(s)	216, 261
SfaNI	GCATC	3 cut(s)	748, 846, 928
SmlI	CTYRAG	1 cut(s)	998
SmoI	CTYRAG	1 cut(s)	998
SnaBI	TACGTA	1 cut(s)	234
Sse9I	AATT	8 cut(s)	316, 352, 444, 488, 564, 792, 850, 926
SseBI	AGGCCT	1 cut(s)	996
SsiI	CCGC	4 cut(s)	193, 468, 744, 761
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	996
StyD4I	CCNGG	2 cut(s)	214, 259
StyI	CCWWGG	2 cut(s)	784, 886
TaaI	ACNGT	3 cut(s)	819, 898, 1020
TaiI	ACGT	3 cut(s)	8, 236, 477
TaqI	TCGA	1 cut(s)	222
TasI	AATT	8 cut(s)	316, 352, 444, 488, 564, 792, 850, 926
TatI	WGTACW	2 cut(s)	819, 867
TauI	GCSGC	2 cut(s)	196, 747
TfiI	GAWTC	2 cut(s)	62, 227
Tru1I	TTAA	3 cut(s)	321, 660, 1032
Tru9I	TTAA	3 cut(s)	321, 660, 1032
TscAI	CASTG	2 cut(s)	415, 1023
TseFI	GTSAC	6 cut(s)	43, 76, 329, 677, 844, 1037
TseI	GCWGC	3 cut(s)	530, 533, 1013
Tsp45I	GTSAC	6 cut(s)	43, 76, 329, 677, 844, 1037
TspDTI	ATGAA	2 cut(s)	501, 928
TspRI	CASTG	2 cut(s)	415, 1023
Van91I	CCANNNNNTGG	1 cut(s)	275
XapI	RAATTY	4 cut(s)	316, 444, 488, 926
XmiI	GTMKAC	3 cut(s)	222, 249, 877
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.