Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006585

Physical Location & Seq

Genomic Coordinates Reverse (-)

46017048 .. 46020576

Gene Structure 3529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGACTGTTCCGTTTCTGAGGGAGGCCTTCAAGCTGCCATCGCCAAGAAACTAAAACAAAATCAGGCCCGTGATCCTGGGAGCTCGTCTAGTTTAGCAGGTTCAGTAGATAGTTTTGAGCCCCTCAAGAGTTCAGGATCAATCAATTTGATTGCTCTCAAAAGTTCCAATGATTCATCATGTATTGATGACGATGAAATGAAGATTGAAGATGATCGTGATGATGATGAAGATGATCGTGATGATGATGAAGATGAATATGATTTTGATGACAATGATGTATATCTGTCTGATGACGATTATTTGACCATGGAATCTCAATTTGATAATGTGGATTTGCCTCCTGGGGTGGAAGCTTCACTTCCCTGGTTGAAGGATCCTTCTCCAAGTGAAAACACATCGTCCACTAAGAAGTTAACTATTTCAGATGCACCACCTGTAACTGGTCTACCATCTGCAGCCGGTTCATCATCTGCTTCATGCAGCTCAGCTGTTCCTTCTGAGTCAAGTTCTAGTAAGAACGTACAAAACAGCGATGACGATAGTCTCATGCAAAAATTTCAACAATTTAAGCAATTTGATGTTGTCGAGGACTTCTCGGATCATCACTATAGCCGAATGGGATTTTCAGATGAGCAGATGGTTTACTACTATTCCGGTGGTCTTCGGCTAAATCCAAATTTGTATGATTGTGGGAAAGTTTGTCTCAGTCTTTTAGGCACGTGGAGCGGTAGACAGAGAGAAAACTGGATACCTGGGGAATCAACAATGCTACAAGTTTTGGTTTCTATACAAGCTCTTATACTGAATGCAGACCCCTTTTTCAATGAGCCTGGGTATGAGACAAGGTATACTGGAGTAGAAGGGCAAAAAAAATCCAGGAAGTACAGTGAAGAGGTCTTTATTATGTCTCTGAAGACGATGATGTATACACTAAGGAAGCCACCTAAGTATTTTGAGGACTTTGTCTTGGGTCATTTTCGCAATCGTGCACATAATATTCTGGCAGCATGTAAGGCATATTCTGAGGGTACATTGGTTGGGTCTTCTATTGGAGATACAGTGCAGAATGGAGTTGAAAGTGGCTCAAGTGAATTTAAGTCATCTGTTGCTAGGATGATGAATATGCTTGTTACATATTTCACCAGAAATGGATCAACAGACTGTGAGCAGTTTCGAGGTGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

396

Amino Acids

43.73

Weight (kDa)

4.4

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53023 AT1G53025 AT1G53025
fragaria_vesca	FvH4_6g26220 FvH4_6g26220 FvH4_6g26220 FvH4_6g26220
malus_domestica	MD09G1247000.v1.1 MD17G1240000.v1.1
prunus_persica	Prupe.3G132700_v2.0.a1
pyrus_communis	pycom09g16440 pycom17g24330
rosa_chinensis	RchiOBHm_Chr2g0126571
rosa_laevigata	RLG00000018913
rosa_multiflora	Rmu_sc0002369.1_g000030 Rmu_sc0007463.1_g000009 Rmu_sc0021234.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117080
rosa_rugosa	Rorug02G0263700 Rorug02G0263800 Rorug02G0263900
rosa_samantha	Rh2AG320900 Rh2BG329200 Rh2CG309000 Rh2DG348500
rosa_wichuraiana	Rw2G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	729
AccI	GTMKAC	4 cut(s)	448, 733, 851, 929
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	6 cut(s)	68, 145, 371, 384, 609, 1162
AcsI	RAATTY	3 cut(s)	557, 679, 1094
AcuI	CTGAAG	1 cut(s)	935
AcvI	CACGTG	1 cut(s)	723
AfaI	GTAC	3 cut(s)	525, 887, 1033
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	6 cut(s)	32, 209, 373, 563, 826, 1079
AjnI	CCWGG	6 cut(s)	76, 343, 365, 754, 832, 878
AluBI	AGCT	6 cut(s)	35, 84, 356, 486, 491, 797
AluI	AGCT	6 cut(s)	35, 84, 356, 486, 491, 797
Alw21I	GWGCWC	2 cut(s)	86, 994
Alw26I	GTCTC	4 cut(s)	551, 710, 836, 915
Alw44I	GTGCAC	1 cut(s)	990
AlwI	GGATC	6 cut(s)	68, 145, 371, 384, 609, 1162
AoxI	GGCC	2 cut(s)	25, 66
ApaLI	GTGCAC	1 cut(s)	990
ApeKI	GCWGC	5 cut(s)	35, 458, 483, 1007, 1184
ApoI	RAATTY	3 cut(s)	557, 679, 1094
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	1135
BaeGI	GKGCMC	1 cut(s)	994
BaeI	ACNNNNGTAYC	2 cut(s)	1023, 1056
BamHI	GGATCC	1 cut(s)	376
BanII	GRGCYC	2 cut(s)	86, 123
BbrPI	CACGTG	1 cut(s)	723
BbsI	GAAGAC	3 cut(s)	656, 923, 1038
Bbv12I	GWGCWC	2 cut(s)	86, 994
BbvI	GCAGC	4 cut(s)	22, 470, 495, 1019
BccI	CCATC	3 cut(s)	47, 460, 634
BciT130I	CCWGG	6 cut(s)	78, 345, 367, 756, 834, 880
BciVI	GTATCC	1 cut(s)	744
BcoDI	GTCTC	4 cut(s)	551, 710, 836, 915
BfaI	CTAG	3 cut(s)	90, 513, 1113
BfmI	CTRYAG	2 cut(s)	456, 610
BfuAI	ACCTGC	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	744
BisI	GCNGC	5 cut(s)	36, 459, 484, 1008, 1185
BlpI	GCTNAGC	1 cut(s)	487
BlsI	GCNGC	5 cut(s)	37, 460, 485, 1009, 1186
Bme1390I	CCNGG	6 cut(s)	78, 345, 367, 756, 834, 880
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	6 cut(s)	78, 345, 367, 756, 834, 880
BmsI	GCATC	1 cut(s)	418
BoxI	GACNNNNGTC	1 cut(s)	543
BpiI	GAAGAC	3 cut(s)	656, 923, 1038
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	487
BpuEI	CTTGAG	2 cut(s)	110, 1072
BsaAI	YACGTR	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	6 cut(s)	77, 309, 344, 365, 755, 833
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	1047, 1077
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	3 cut(s)	448, 752, 859
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	6 cut(s)	78, 345, 367, 756, 834, 880
BseDI	CCNNGG	6 cut(s)	77, 309, 344, 365, 755, 833
BseGI	GGATG	1 cut(s)	1122
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	5 cut(s)	9, 492, 501, 721, 1017
BseNI	ACTGG	3 cut(s)	448, 752, 859
BseSI	GKGCMC	1 cut(s)	994
BseXI	GCAGC	4 cut(s)	22, 470, 495, 1019
BsgI	GTGCAG	1 cut(s)	1085
BshFI	GGCC	2 cut(s)	27, 68
BsiHKAI	GWGCWC	2 cut(s)	86, 994
BsiSI	CCGG	2 cut(s)	462, 657
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	4 cut(s)	551, 710, 836, 915
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	2 cut(s)	27, 68
Bsp1286I	GDGCHC	3 cut(s)	86, 123, 994
Bsp143I	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
Bsp1720I	GCTNAGC	1 cut(s)	487
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	27, 68
BspCNI	CTCAG	5 cut(s)	10, 493, 500, 720, 1018
BspLI	GGNNCC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	6 cut(s)	68, 145, 371, 384, 609, 1162
BsrBI	CCGCTC	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	448, 752, 859
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	6 cut(s)	77, 309, 344, 365, 755, 833
BssMI	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
BssNAI	GTATAC	2 cut(s)	852, 930
BssT1I	CCWWGG	1 cut(s)	309
Bst1107I	GTATAC	2 cut(s)	852, 930
Bst2UI	CCWGG	6 cut(s)	78, 345, 367, 756, 834, 880
Bst4CI	ACNGT	4 cut(s)	8, 890, 1063, 1166
Bst6I	CTCTTC	1 cut(s)	888
BstBAI	YACGTR	1 cut(s)	723
BstDEI	CTNAG	8 cut(s)	18, 408, 487, 501, 707, 935, 948, 1026
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	1122
BstKTI	GATC	7 cut(s)	76, 140, 217, 238, 379, 604, 1157
BstMAI	GTCTC	4 cut(s)	551, 710, 836, 915
BstMBI	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 726, 1016
BstNI	CCWGG	6 cut(s)	78, 345, 367, 756, 834, 880
BstNSI	RCATGY	1 cut(s)	1014
BstPAI	GACNNNNGTC	1 cut(s)	543
BstSCI	CCNGG	6 cut(s)	76, 343, 365, 754, 832, 878
BstSFI	CTRYAG	2 cut(s)	456, 610
BstSLI	GKGCMC	1 cut(s)	994
BstV1I	GCAGC	4 cut(s)	22, 470, 495, 1019
BstV2I	GAAGAC	3 cut(s)	656, 923, 1038
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZ17I	GTATAC	2 cut(s)	852, 930
BsuI	GTATCC	1 cut(s)	744
BsuRI	GGCC	2 cut(s)	27, 68
BtgI	CCRYGG	1 cut(s)	309
BtgZI	GCGATG	2 cut(s)	25, 549
BtsCI	GGATG	1 cut(s)	1122
BtsIMutI	CAGTG	2 cut(s)	895, 1068
BveI	ACCTGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	524, 886, 1032
CviAII	CATG	5 cut(s)	180, 310, 480, 550, 1011
CviQI	GTAC	3 cut(s)	524, 886, 1032
DdeI	CTNAG	8 cut(s)	18, 408, 487, 501, 707, 935, 948, 1026
DpnI	GATC	7 cut(s)	75, 139, 216, 237, 378, 603, 1156
DpnII	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	86, 123
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	935
Eco72I	CACGTG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	6 cut(s)	76, 343, 365, 754, 832, 878
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	86, 123
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	5 cut(s)	183, 313, 483, 553, 1014
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	5 cut(s)	179, 309, 479, 549, 1010
FblI	GTMKAC	4 cut(s)	448, 733, 851, 929
Fnu4HI	GCNGC	5 cut(s)	36, 459, 484, 1008, 1185
FokI	GGATG	1 cut(s)	1129
FriOI	GRGCYC	2 cut(s)	86, 123
Fsp4HI	GCNGC	5 cut(s)	36, 459, 484, 1008, 1185
FspBI	CTAG	3 cut(s)	90, 513, 1113
GluI	GCNGC	5 cut(s)	36, 459, 484, 1008, 1185
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	27, 68
HapII	CCGG	2 cut(s)	462, 657
Hin1II	CATG	5 cut(s)	183, 313, 483, 553, 1014
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	4 cut(s)	173, 314, 503, 761
HpaI	GTTAAC	1 cut(s)	417
HpaII	CCGG	2 cut(s)	462, 657
HphI	GGTGA	1 cut(s)	1135
Hpy166II	GTNNAC	8 cut(s)	405, 417, 449, 646, 734, 852, 930, 992
Hpy188I	TCNGA	8 cut(s)	19, 292, 427, 502, 601, 631, 915, 1027
Hpy188III	TCNNGA	4 cut(s)	127, 135, 218, 239
Hpy8I	GTNNAC	8 cut(s)	405, 417, 449, 646, 734, 852, 930, 992
HpyAV	CCTTC	5 cut(s)	38, 367, 390, 507, 857
HpyCH4III	ACNGT	4 cut(s)	8, 890, 1063, 1166
HpyCH4IV	ACGT	2 cut(s)	522, 722
HpyCH4V	TGCA	8 cut(s)	431, 458, 483, 553, 812, 992, 1066, 1184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 726, 1016
HpyF3I	CTNAG	8 cut(s)	18, 408, 487, 501, 707, 935, 948, 1026
HpySE526I	ACGT	2 cut(s)	522, 722
Hsp92II	CATG	5 cut(s)	183, 313, 483, 553, 1014
KspAI	GTTAAC	1 cut(s)	417
Kzo9I	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
LmnI	GCTCC	2 cut(s)	81, 726
Lsp1109I	GCAGC	4 cut(s)	22, 470, 495, 1019
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	90, 513, 1113
MaeII	ACGT	2 cut(s)	522, 722
MaeIII	GTNAC	2 cut(s)	439, 1132
MalI	GATC	7 cut(s)	75, 139, 216, 237, 378, 603, 1156
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
MboII	GAAGA	8 cut(s)	214, 221, 242, 263, 656, 905, 928, 1038
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	3 cut(s)	86, 123, 994
MluCI	AATT	7 cut(s)	145, 320, 557, 566, 575, 679, 1094
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	13, 17, 134, 351, 583, 889, 952, 1021, 1172
MseI	TTAA	3 cut(s)	416, 570, 1098
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	462, 657
MspR9I	CCNGG	6 cut(s)	78, 345, 367, 756, 834, 880
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	6 cut(s)	78, 345, 367, 756, 834, 880
MwoI	GCNNNNNNNGC	3 cut(s)	41, 726, 1016
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
NlaIII	CATG	5 cut(s)	183, 313, 483, 553, 1014
NlaIV	GGNNCC	1 cut(s)	378
NspI	RCATGY	1 cut(s)	1014
PceI	AGGCCT	1 cut(s)	27
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	3 cut(s)	173, 314, 761
PflFI	GACNNNGTC	1 cut(s)	965
PfoI	TCCNGGA	1 cut(s)	878
PkrI	GCNGC	5 cut(s)	37, 460, 485, 1009, 1186
PleI	GAGTC	1 cut(s)	511
PmaCI	CACGTG	1 cut(s)	723
PmlI	CACGTG	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	723
PshAI	GACNNNNGTC	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	6 cut(s)	76, 343, 365, 754, 832, 878
PspCI	CACGTG	1 cut(s)	723
PspGI	CCWGG	6 cut(s)	76, 343, 365, 754, 832, 878
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	1 cut(s)	965
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	525, 887, 1033
RsaNI	GTAC	3 cut(s)	524, 886, 1032
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	416, 570, 1098
SatI	GCNGC	5 cut(s)	36, 459, 484, 1008, 1185
Sau3AI	GATC	7 cut(s)	73, 137, 214, 235, 376, 601, 1154
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	6 cut(s)	78, 345, 367, 756, 834, 880
SduI	GDGCHC	3 cut(s)	86, 123, 994
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	456, 610
SmlI	CTYRAG	2 cut(s)	125, 1087
SmoI	CTYRAG	2 cut(s)	125, 1087
Sse9I	AATT	7 cut(s)	145, 320, 557, 566, 575, 679, 1094
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	729
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	3 cut(s)	90, 513, 1113
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	6 cut(s)	76, 343, 365, 754, 832, 878
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	4 cut(s)	8, 890, 1063, 1166
TaiI	ACGT	2 cut(s)	525, 725
TaqI	TCGA	2 cut(s)	588, 1177
TasI	AATT	7 cut(s)	145, 320, 557, 566, 575, 679, 1094
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	3 cut(s)	173, 314, 761
Tru1I	TTAA	3 cut(s)	416, 570, 1098
Tru9I	TTAA	3 cut(s)	416, 570, 1098
TscAI	CASTG	2 cut(s)	895, 1068
TseI	GCWGC	5 cut(s)	35, 458, 483, 1007, 1184
TspDTI	ATGAA	9 cut(s)	165, 210, 215, 243, 264, 270, 456, 468, 1136
TspRI	CASTG	2 cut(s)	895, 1068
Tth111I	GACNNNGTC	1 cut(s)	965
VneI	GTGCAC	1 cut(s)	990
XapI	RAATTY	3 cut(s)	557, 679, 1094
XceI	RCATGY	1 cut(s)	1014
XmiI	GTMKAC	4 cut(s)	448, 733, 851, 929
XspI	CTAG	3 cut(s)	90, 513, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.