Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002412

Physical Location & Seq

Genomic Coordinates Forward (+)

18513131 .. 18524456

Gene Structure 11326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G166300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCAGGGAAAATTGGAGGAAGCTGAAAAGCTTTTCCTCTTAGCTTTACAAGAAGCTAAAGAAGGCTTTGGAGAGAGGGATCCGCATGTTGCATCTGCATGCAACAACCTAGCAGAGCTCTATAGAGTGAATAAGGCATATAATAAAGCAGAGCCATTGTACTTGGACGCCATCAGCATACTGGAGGAATCATTTGGTCCTGAAGATATACGAGTTGGGTCTGCCTTTCACAACCTGGGGCAGTTCTATATTGTGCAACGGAAGCTGGAAGAAGCTCGCGTTTGCTATGAGATCAAGGCCCGTGTTCTGGGTCTTAATCATACAGATTATGCAGATACTATGTATCATCTTGGAACGGTGCTACAACTCCAAGGAAAAGGAAAGGATTCGGAGGCCCTTATTCAGGATTCTATTAGAATACTCGAGGATGGTGGCCAAGGGGAGTCAATAATGTGTGTCAAGAGAATGCGATATCTTGCTCAGATATATATGAAATCCAACCGTCTTGAGGAGGCTGAGAAGGTACAAAGAAAGATTCTGCATATAATGGAATTGACAAAGGGATGGAATTCATTGGACACAGTAATAACAGCTGAAGGGCTCGCGTTGATCCTACAATCAGCTGGGAGCTTAAAAGAAGCTGAAGAGCTTCTTGAAAGGTGTCTTGATGCTCGGAAAACCTTACTTCCTGAAGATCATATTCAGATTGGTGCGAACATGCTTCACATGGCTAGAGTGGCAATACTCAATTCCAACCAACTAAAGAAGGTGGACACTTCTAAAGCAATTTGTGAGCTTGAGAAGGCCAGAGATATTTTAAACGAGTCCATAAGGATAGCACGGTCTTCTTTAGATAAATCAATGAGGCAAAATAGAAAGATACATAGTTATGGAGCATCAGGTGACATTGGAAAGAATTTTCGTGTGGCATTGGTCATACTGTTGCAAGCGTTTGATGCTCTTGGCCTTTTAGCGATCACTAAGCAAGAGTTACAGGAGTCAAAGCAGGATGAGTGTTTACCTAACTCCGAAGCTGAGAGTGCACTATTAAGATGCATTTCTACTTACAAAGAGTTTGTAACTGAGATGTCAATTGCGGAGTTTCCTGAAGTAAAGGCAGAGTATCTTAAATGTTTGAAGCATCTTTTGAGCTTAAATGGTAATAGCACTACCCAAACATCACAGCGATCTACCAGAGTCAATTTGCAAGATTTGAGAGATGAAATCAAGCGTCTGGAACTTCAACTCTCTCCTTCTAGGAATCGTAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

425

Amino Acids

47.91

Weight (kDa)

6.37

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37590 AT5G37590
fragaria_vesca	FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190
malus_domestica	MD17G1268600.v1.1
prunus_persica	Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1
pyrus_communis	pycom17g26710
rosa_chinensis	RchiOBHm_Chr3g0491391
rosa_laevigata	RLG00000022845
rosa_multiflora	Rmu_sc0000293.1_g000001 Rmu_sc0006034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115220 Rroxscaffold_6G00392930 Rroxscaffold_6G00392950 Rroxscaffold_7G00196910
rosa_rugosa	Rorug03G0248800 Rorug03G0249100
rosa_samantha	Rh3AG298500 Rh3BG334300 Rh3CG331300 Rh3DG332800
rosa_wichuraiana	Rw3G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	279, 605
AciI	CCGC	2 cut(s)	83, 1097
AclWI	GGATC	3 cut(s)	74, 87, 604
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	568, 916
AcuI	CTGAAG	5 cut(s)	222, 615, 663, 711, 1128
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	161, 525
AfiI	CCNNNNNNNGG	3 cut(s)	307, 403, 508
AgsI	TTSAA	3 cut(s)	656, 1138, 1244
AjnI	CCWGG	1 cut(s)	234
Alw21I	GWGCWC	2 cut(s)	120, 1045
Alw44I	GTGCAC	1 cut(s)	1041
AlwI	GGATC	3 cut(s)	74, 87, 604
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	5 cut(s)	297, 393, 433, 804, 964
ApaLI	GTGCAC	1 cut(s)	1041
ApoI	RAATTY	2 cut(s)	568, 916
Asp700I	GAANNNNTTC	2 cut(s)	385, 648
AspS9I	GGNCC	3 cut(s)	197, 298, 394
AsuHPI	GGTGA	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	1045
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	120, 603
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	120, 1045
BccI	CCATC	3 cut(s)	179, 422, 558
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	3 cut(s)	110, 732, 1257
BfmI	CTRYAG	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	197, 298, 394
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	6 cut(s)	101, 658, 905, 946, 1043, 1150
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	527, 818
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	235, 370, 436
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 403, 508
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	235, 370, 436
BseGI	GGATG	3 cut(s)	433, 569, 1015
BseLI	CCNNNNNNNGG	3 cut(s)	307, 403, 508
BseMII	CTCAG	4 cut(s)	494, 507, 1026, 1074
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	1045
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	279, 605
BshFI	GGCC	5 cut(s)	299, 395, 435, 806, 966
BsiHKAI	GWGCWC	2 cut(s)	120, 1045
BsiHKCI	CYCGRG	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	307, 403, 508
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	5 cut(s)	299, 395, 435, 806, 966
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	3 cut(s)	120, 603, 1045
Bsp143I	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
BspACI	CCGC	2 cut(s)	83, 1097
BspANI	GGCC	5 cut(s)	299, 395, 435, 806, 966
BspCNI	CTCAG	4 cut(s)	493, 508, 1027, 1075
BspFNI	CGCG	2 cut(s)	279, 605
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	74, 87, 604
BspQI	GCTCTTC	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	235, 370, 436
BssMI	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	370, 436
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	5 cut(s)	358, 503, 583, 843, 942
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	100, 277, 603, 948
BstDEI	CTNAG	6 cut(s)	40, 480, 516, 981, 1035, 1083
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	433, 569, 1015
BstFNI	CGCG	2 cut(s)	279, 605
BstKTI	GATC	6 cut(s)	82, 294, 612, 697, 978, 1190
BstMBI	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 737, 956, 1040
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	3 cut(s)	89, 102, 721
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	1045
BstUI	CGCG	2 cut(s)	279, 605
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	299, 395, 435, 806, 966
BtsCI	GGATG	3 cut(s)	433, 569, 1015
Cac8I	GCNNGC	4 cut(s)	100, 277, 603, 948
Cfr13I	GGNCC	3 cut(s)	197, 298, 394
CseI	GACGC	2 cut(s)	176, 1220
Csp6I	GTAC	2 cut(s)	160, 524
CviAII	CATG	4 cut(s)	86, 99, 718, 727
CviQI	GTAC	2 cut(s)	160, 524
DdeI	CTNAG	6 cut(s)	40, 480, 516, 981, 1035, 1083
DpnI	GATC	6 cut(s)	81, 293, 611, 696, 977, 1189
DpnII	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
DraI	TTTAAA	1 cut(s)	819
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	370, 436
Eco24I	GRGCYC	2 cut(s)	120, 603
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	5 cut(s)	222, 615, 663, 711, 1128
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	2 cut(s)	370, 436
EcoT22I	ATGCAT	1 cut(s)	1058
EcoT38I	GRGCYC	2 cut(s)	120, 603
ErhI	CCWWGG	2 cut(s)	370, 436
FaeI	CATG	4 cut(s)	89, 102, 721, 730
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FatI	CATG	4 cut(s)	85, 98, 717, 726
FokI	GGATG	3 cut(s)	440, 576, 1022
FriOI	GRGCYC	2 cut(s)	120, 603
FspBI	CTAG	3 cut(s)	110, 732, 1257
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	5 cut(s)	299, 395, 435, 806, 966
HgaI	GACGC	2 cut(s)	176, 1220
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	89, 102, 721, 730
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	9 cut(s)	188, 386, 407, 443, 535, 824, 998, 1197, 1261
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	3 cut(s)	772, 1019, 1043
Hpy188I	TCNGA	5 cut(s)	391, 483, 675, 705, 1030
Hpy188III	TCNNGA	9 cut(s)	200, 404, 460, 506, 653, 665, 689, 1106, 1235
Hpy8I	GTNNAC	3 cut(s)	772, 1019, 1043
HpyAV	CCTTC	6 cut(s)	56, 514, 590, 760, 796, 1263
HpyCH4III	ACNGT	5 cut(s)	358, 503, 583, 843, 942
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 737, 956, 1040
HpyF3I	CTNAG	6 cut(s)	40, 480, 516, 981, 1035, 1083
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	89, 102, 721, 730
Kzo9I	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	627, 893
LweI	GCATC	6 cut(s)	101, 658, 905, 946, 1043, 1150
MaeI	CTAG	3 cut(s)	110, 732, 1257
MaeIII	GTNAC	3 cut(s)	902, 990, 1078
MalI	GATC	6 cut(s)	81, 293, 611, 696, 977, 1189
MboI	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
MboII	GAAGA	5 cut(s)	215, 281, 656, 704, 837
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	120, 603, 1045
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	8 cut(s)	11, 551, 568, 748, 786, 916, 1092, 1201
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	4 cut(s)	452, 833, 1007, 1206
MmeI	TCCRAC	2 cut(s)	522, 777
MnlI	CCTC	9 cut(s)	10, 47, 69, 178, 385, 418, 502, 505, 858
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	1058
MroXI	GAANNNNTTC	2 cut(s)	385, 648
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	6 cut(s)	315, 632, 818, 1049, 1128, 1154
MslI	CAYNNNNRTG	2 cut(s)	97, 888
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	2 cut(s)	593, 623
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	1092
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	279, 605
MwoI	GCNNNNNNNGC	4 cut(s)	262, 737, 956, 1040
NdeII	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
NlaIII	CATG	4 cut(s)	89, 102, 721, 730
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	1058
NspI	RCATGY	3 cut(s)	89, 102, 721
PaeI	GCATGC	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	639
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	385, 648
PfeI	GAWTC	5 cut(s)	188, 386, 407, 535, 1261
PleI	GAGTC	4 cut(s)	451, 832, 1006, 1205
PpsI	GAGTC	4 cut(s)	451, 832, 1006, 1205
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	197, 298, 394
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	2 cut(s)	593, 623
RsaI	GTAC	2 cut(s)	161, 525
RsaNI	GTAC	2 cut(s)	160, 524
RseI	CAYNNNNRTG	2 cut(s)	97, 888
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	6 cut(s)	315, 632, 818, 1049, 1128, 1154
Sau3AI	GATC	6 cut(s)	79, 291, 609, 694, 975, 1187
Sau96I	GGNCC	3 cut(s)	197, 298, 394
SchI	GAGTC	4 cut(s)	452, 833, 1007, 1206
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	3 cut(s)	120, 603, 1045
SfaNI	GCATC	6 cut(s)	101, 658, 905, 946, 1043, 1150
SfcI	CTRYAG	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	97, 888
SmlI	CTYRAG	3 cut(s)	422, 506, 797
SmoI	CTYRAG	3 cut(s)	422, 506, 797
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	8 cut(s)	11, 551, 568, 748, 786, 916, 1092, 1201
SsiI	CCGC	2 cut(s)	83, 1097
SspMI	CTAG	3 cut(s)	110, 732, 1257
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	370, 436
TaaI	ACNGT	5 cut(s)	358, 503, 583, 843, 942
TaqI	TCGA	1 cut(s)	423
TasI	AATT	8 cut(s)	11, 551, 568, 748, 786, 916, 1092, 1201
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	5 cut(s)	188, 386, 407, 535, 1261
Tru1I	TTAA	6 cut(s)	315, 632, 818, 1049, 1128, 1154
Tru9I	TTAA	6 cut(s)	315, 632, 818, 1049, 1128, 1154
TseFI	GTSAC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	3 cut(s)	506, 561, 1236
TspGWI	ACGGA	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	1041
VpaK11BI	GGWCC	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	2 cut(s)	568, 916
XceI	RCATGY	3 cut(s)	89, 102, 721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	422
XmnI	GAANNNNTTC	2 cut(s)	385, 648
XspI	CTAG	3 cut(s)	110, 732, 1257
Zsp2I	ATGCAT	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.