Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000293.1

Orthogroup ID

OG0002412

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 12186

Gene Structure 12186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1535 bp

ttgtaggcggttacaagttttctgatcagcattggaggatggaccctcggctctggttttttctatctggaaatgcagcaattattcttgccataaattccaacaccgtcttggcaaaagatgcatcacttgataatgaggcacaggggatggaaggggatgacacaatgcaattacgcagagttgaggatgcttctgtcaaatctaacatacatacctctaagtggagagtttttacagataaagggagggaattcttccttcagggaaaagtggaggaagctgaaaagctctttctcgcagctttacaggaagctgaagaaggttttgggaagagggatccgcatgttgcatctgcaagcaataatttagcagagctctatagagttaataagctatatcataaggcagagccattgtatttggaggccatcagcatactggaggagtcatttggtcctgaagatatacgagttgggtctgcctttcataacctgggtcagttctatattgtacagcggaagctggatgaagcccgtgtttgctatgagattaaacgccgtgttctgggtcttaaccatacaggttatgcagatacaatgtatcatcttggaacggtgctacacctccaaggaaaagaaaaggactctgaggccctcgttcaagattccattcgcatacttgaggatggtggtcaaggagagtcggttatgtgcttaaagagaatgcgatatcttgctcagatatatctgaaatccaatcgatttgaggaggccgagaaggtacaaagaaagatcctgcatatactggaaataacaaagggatggaatgcattggatacagcaataacagctgaagggctcgcactgatcctccaatccactgggagcttaaaggaagctgaagagcttcttgaaagatgtcttgatgcccgaaaagccttacttcctcaagatcatgttcagattggtgtgaacttgcttcatattgctagagtggcaatgctcaattccgaccaactgaagaatattgactatccaaaagcaatttctgagcttgataaggctaaagaagctttacatgagtccatgaggatagcacaatgttccttggataagttgacgaagcaaaataagaagattcgtagtaatggagcaccaggtgaaattggaaagaatggtcaggtgccattagtcatattgttgcaagcttctgatgctcttggccttttggagatcacaaagaaacaattacaagggtcacagcagtctgagcatgcacctaatatcgaagctgagaatgcactatttaaatgtatatctgcttacaaagagttcgtaactgagagatcaatccctgagtctcctgaaacaaaggccgagtatcttaaatgtttgaagcatcttttgagcttgaatagtgatagcactacagaaagaacacagcactctactggagtcaatttgcaagatctgagggacgaaattaagcgtcttgaagttgaactttctcctcataggaaacgcaaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

510

Amino Acids

57.55

Weight (kDa)

6.39

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37590 AT5G37590
fragaria_vesca	FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190
malus_domestica	MD17G1268600.v1.1
prunus_persica	Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1
pyrus_communis	pycom17g26710
rosa_chinensis	RchiOBHm_Chr3g0491391
rosa_laevigata	RLG00000022845
rosa_multiflora	Rmu_sc0000293.1_g000001 Rmu_sc0006034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115220 Rroxscaffold_6G00392930 Rroxscaffold_6G00392950 Rroxscaffold_7G00196910
rosa_rugosa	Rorug03G0248800 Rorug03G0249100
rosa_samantha	Rh3AG298500 Rh3BG334300 Rh3CG331300 Rh3DG332800
rosa_wichuraiana	Rw3G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1185
AciI	CCGC	3 cut(s)	8, 343, 519
AclWI	GGATC	4 cut(s)	334, 347, 789, 864
AcsI	RAATTY	3 cut(s)	96, 253, 1529
AcuI	CTGAAG	6 cut(s)	247, 338, 482, 875, 923, 1042
AdeI	CACNNNGTG	1 cut(s)	1162
AfaI	GTAC	2 cut(s)	515, 785
AfiI	CCNNNNNNNGG	2 cut(s)	224, 567
AgsI	TTSAA	6 cut(s)	664, 916, 1398, 1416, 1498, 1504
AjnI	CCWGG	2 cut(s)	494, 1158
AjuI	GAANNNNNNNTTGG	4 cut(s)	311, 343, 1032, 1064
Alw21I	GWGCWC	2 cut(s)	380, 1158
Alw26I	GTCTC	1 cut(s)	1367
AlwI	GGATC	4 cut(s)	334, 347, 789, 864
AoxI	GGCC	5 cut(s)	428, 653, 773, 1224, 1376
ApeKI	GCWGC	2 cut(s)	76, 301
ApoI	RAATTY	3 cut(s)	96, 253, 1529
Asp700I	GAANNNNTTC	1 cut(s)	908
AspS9I	GGNCC	3 cut(s)	42, 457, 654
AsuHPI	GGTGA	1 cut(s)	1174
AvaII	GGWCC	2 cut(s)	42, 457
BamHI	GGATCC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	1185
BanII	GRGCYC	2 cut(s)	380, 863
Bbv12I	GWGCWC	2 cut(s)	380, 1158
BbvI	GCAGC	2 cut(s)	88, 313
BccI	CCATC	5 cut(s)	33, 144, 439, 682, 818
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	2 cut(s)	496, 1160
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	1367
BfaI	CTAG	1 cut(s)	992
BfmI	CTRYAG	2 cut(s)	381, 1430
BfuI	GTATCC	1 cut(s)	831
BglII	AGATCT	1 cut(s)	1470
BisI	GCNGC	2 cut(s)	77, 302
BlsI	GCNGC	2 cut(s)	78, 303
Bme1390I	CCNGG	2 cut(s)	496, 1160
Bme18I	GGWCC	2 cut(s)	42, 457
BmgT120I	GGNCC	3 cut(s)	42, 457, 654
BmiI	GGNNCC	3 cut(s)	44, 341, 1187
BmrFI	CCNGG	2 cut(s)	496, 1160
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	7 cut(s)	111, 133, 180, 361, 918, 1206, 1410
BmuI	ACTGGG	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	463, 1475
BpuEI	CTTGAG	2 cut(s)	703, 935
Bsa29I	ATCGAT	1 cut(s)	762
BsaJI	CCNNGG	4 cut(s)	46, 495, 630, 1109
BsaXI	ACNNNNNCTCC	4 cut(s)	692, 722, 857, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 567
Bse1I	ACTGG	4 cut(s)	446, 812, 888, 1458
Bse3DI	GCAATG	1 cut(s)	1007
BseBI	CCWGG	2 cut(s)	496, 1160
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	4 cut(s)	46, 495, 630, 1109
BseGI	GGATG	7 cut(s)	44, 155, 165, 195, 534, 693, 829
BseLI	CCNNNNNNNGG	2 cut(s)	224, 567
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	8 cut(s)	641, 754, 1043, 1262, 1286, 1334, 1349, 1465
BseNI	ACTGG	4 cut(s)	446, 812, 888, 1458
BseRI	GAGGAG	3 cut(s)	460, 784, 1502
BseXI	GCAGC	2 cut(s)	88, 313
BshFI	GGCC	5 cut(s)	430, 655, 775, 1226, 1378
BshNI	GGYRCC	1 cut(s)	1185
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	2 cut(s)	380, 1158
BslFI	GGGAC	1 cut(s)	1492
BslI	CCNNNNNNNGG	2 cut(s)	224, 567
BsmAI	GTCTC	1 cut(s)	1367
BsmFI	GGGAC	1 cut(s)	1492
BsmI	GAATGC	3 cut(s)	731, 834, 1305
BsnI	GGCC	5 cut(s)	430, 655, 775, 1226, 1378
Bsp1286I	GDGCHC	3 cut(s)	380, 863, 1158
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
BspACI	CCGC	3 cut(s)	8, 343, 519
BspANI	GGCC	5 cut(s)	430, 655, 775, 1226, 1378
BspCNI	CTCAG	8 cut(s)	642, 753, 1044, 1263, 1287, 1335, 1350, 1466
BspDI	ATCGAT	1 cut(s)	762
BspLI	GGNNCC	3 cut(s)	44, 341, 1187
BspPI	GGATC	4 cut(s)	334, 347, 789, 864
BspQI	GCTCTTC	1 cut(s)	899
BspT107I	GGYRCC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	1007
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	4 cut(s)	446, 812, 888, 1458
BssECI	CCNNGG	4 cut(s)	46, 495, 630, 1109
BssMI	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
BssT1I	CCWWGG	2 cut(s)	630, 1109
Bst2UI	CCWGG	2 cut(s)	496, 1160
Bst4CI	ACNGT	2 cut(s)	108, 618
Bst6I	CTCTTC	2 cut(s)	328, 899
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	360, 863, 1208, 1277
BstDEI	CTNAG	9 cut(s)	221, 650, 740, 1052, 1271, 1295, 1343, 1358, 1474
BstF5I	GGATG	7 cut(s)	44, 155, 165, 195, 534, 693, 829
BstKTI	GATC	8 cut(s)	27, 342, 797, 872, 957, 1238, 1351, 1473
BstMAI	GTCTC	1 cut(s)	1367
BstMBI	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
BstMWI	GCNNNNNNNGC	8 cut(s)	121, 850, 937, 997, 1072, 1216, 1272, 1300
BstNI	CCWGG	2 cut(s)	496, 1160
BstNSI	RCATGY	2 cut(s)	349, 1279
BstSCI	CCNGG	2 cut(s)	494, 1158
BstSFI	CTRYAG	2 cut(s)	381, 1430
BstV1I	GCAGC	2 cut(s)	88, 313
BstX2I	RGATCY	3 cut(s)	339, 794, 1470
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstYI	RGATCY	3 cut(s)	339, 794, 1470
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	5 cut(s)	430, 655, 775, 1226, 1378
BsuTUI	ATCGAT	1 cut(s)	762
BtsCI	GGATG	7 cut(s)	44, 155, 165, 195, 534, 693, 829
BtsIMutI	CAGTG	2 cut(s)	865, 881
Cac8I	GCNNGC	4 cut(s)	360, 863, 1208, 1277
Cfr13I	GGNCC	3 cut(s)	42, 457, 654
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	1 cut(s)	1480
CsiI	ACCWGGT	1 cut(s)	1158
Csp6I	GTAC	2 cut(s)	514, 784
CviAII	CATG	5 cut(s)	346, 958, 1081, 1089, 1276
CviQI	GTAC	2 cut(s)	514, 784
DdeI	CTNAG	9 cut(s)	221, 650, 740, 1052, 1271, 1295, 1343, 1358, 1474
DpnI	GATC	8 cut(s)	26, 341, 796, 871, 956, 1237, 1350, 1472
DpnII	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
DraI	TTTAAA	1 cut(s)	1311
DraIII	CACNNNGTG	1 cut(s)	1162
Eam1104I	CTCTTC	2 cut(s)	328, 899
EarI	CTCTTC	2 cut(s)	328, 899
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	630, 1109
Eco24I	GRGCYC	2 cut(s)	380, 863
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	42, 457
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	6 cut(s)	247, 338, 482, 875, 923, 1042
EcoICRI	GAGCTC	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	494, 1158
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	630, 1109
EcoT22I	ATGCAT	2 cut(s)	126, 834
EcoT38I	GRGCYC	2 cut(s)	380, 863
ErhI	CCWWGG	2 cut(s)	630, 1109
FaeI	CATG	5 cut(s)	349, 961, 1084, 1092, 1279
FalI	AAGNNNNNCTT	6 cut(s)	896, 928, 929, 961, 1490, 1522
FaqI	GGGAC	1 cut(s)	1492
FatI	CATG	5 cut(s)	345, 957, 1080, 1088, 1275
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	77, 302
FokI	GGATG	7 cut(s)	51, 162, 172, 202, 541, 700, 836
FriOI	GRGCYC	2 cut(s)	380, 863
Fsp4HI	GCNGC	2 cut(s)	77, 302
FspBI	CTAG	1 cut(s)	992
GluI	GCNGC	2 cut(s)	77, 302
GsuI	CTGGAG	2 cut(s)	463, 1475
HaeIII	GGCC	5 cut(s)	430, 655, 775, 1226, 1378
HgaI	GACGC	1 cut(s)	1480
Hin1II	CATG	5 cut(s)	349, 961, 1084, 1092, 1279
HincII	GTYRAC	1 cut(s)	1121
HindII	GTYRAC	1 cut(s)	1121
HindIII	AAGCTT	2 cut(s)	1073, 1208
HinfI	GANTC	8 cut(s)	448, 646, 667, 703, 1084, 1140, 1360, 1457
HphI	GGTGA	1 cut(s)	1174
Hpy166II	GTNNAC	2 cut(s)	975, 1121
Hpy188III	TCNNGA	8 cut(s)	68, 460, 664, 913, 925, 952, 1366, 1495
Hpy8I	GTNNAC	2 cut(s)	975, 1121
HpyAV	CCTTC	5 cut(s)	148, 271, 316, 774, 850
HpyCH4III	ACNGT	2 cut(s)	108, 618
HpyF10VI	GCNNNNNNNGC	8 cut(s)	121, 850, 937, 997, 1072, 1216, 1272, 1300
HpyF3I	CTNAG	9 cut(s)	221, 650, 740, 1052, 1271, 1295, 1343, 1358, 1474
Hsp92II	CATG	5 cut(s)	349, 961, 1084, 1092, 1279
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
LguI	GCTCTTC	1 cut(s)	899
LmnI	GCTCC	2 cut(s)	887, 1153
Lsp1109I	GCAGC	2 cut(s)	88, 313
LweI	GCATC	7 cut(s)	111, 133, 180, 361, 918, 1206, 1410
MabI	ACCWGGT	1 cut(s)	1158
MaeI	CTAG	1 cut(s)	992
MaeIII	GTNAC	3 cut(s)	10, 1259, 1338
MalI	GATC	8 cut(s)	26, 341, 796, 871, 956, 1237, 1350, 1472
MboI	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
MboII	GAAGA	7 cut(s)	249, 331, 345, 475, 916, 1035, 1149
MflI	RGATCY	3 cut(s)	339, 794, 1470
MhlI	GDGCHC	3 cut(s)	380, 863, 1158
MlyI	GAGTC	6 cut(s)	457, 640, 712, 1093, 1369, 1466
MmeI	TCCRAC	2 cut(s)	125, 1037
Mph1103I	ATGCAT	2 cut(s)	126, 834
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	8 cut(s)	389, 554, 575, 718, 892, 1310, 1388, 1487
MspA1I	CMGCKG	2 cut(s)	519, 853
MspR9I	CCNGG	2 cut(s)	496, 1160
Mva1269I	GAATGC	3 cut(s)	731, 834, 1305
MvaI	CCWGG	2 cut(s)	496, 1160
MwoI	GCNNNNNNNGC	8 cut(s)	121, 850, 937, 997, 1072, 1216, 1272, 1300
NdeII	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
NlaIII	CATG	5 cut(s)	349, 961, 1084, 1092, 1279
NlaIV	GGNNCC	3 cut(s)	44, 341, 1187
NmeAIII	GCCGAG	3 cut(s)	27, 801, 1404
NmuCI	GTSAC	1 cut(s)	1259
NsiI	ATGCAT	2 cut(s)	126, 834
NspI	RCATGY	2 cut(s)	349, 1279
PaeI	GCATGC	1 cut(s)	1279
PciSI	GCTCTTC	1 cut(s)	899
PctI	GAATGC	3 cut(s)	731, 834, 1305
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	2 cut(s)	667, 1140
PkrI	GCNGC	2 cut(s)	78, 303
PleI	GAGTC	6 cut(s)	456, 640, 711, 1092, 1368, 1465
PpsI	GAGTC	6 cut(s)	456, 640, 711, 1092, 1368, 1465
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	494, 1158
PspGI	CCWGG	2 cut(s)	494, 1158
PspN4I	GGNNCC	3 cut(s)	44, 341, 1187
PspPI	GGNCC	3 cut(s)	42, 457, 654
PsuI	RGATCY	3 cut(s)	339, 794, 1470
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	2 cut(s)	515, 785
RsaNI	GTAC	2 cut(s)	514, 784
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	899
SaqAI	TTAA	8 cut(s)	389, 554, 575, 718, 892, 1310, 1388, 1487
SatI	GCNGC	2 cut(s)	77, 302
Sau3AI	GATC	8 cut(s)	24, 339, 794, 869, 954, 1235, 1348, 1470
Sau96I	GGNCC	3 cut(s)	42, 457, 654
SchI	GAGTC	6 cut(s)	457, 640, 712, 1093, 1369, 1466
ScrFI	CCNGG	2 cut(s)	496, 1160
SduI	GDGCHC	3 cut(s)	380, 863, 1158
SexAI	ACCWGGT	1 cut(s)	1158
SfaNI	GCATC	7 cut(s)	111, 133, 180, 361, 918, 1206, 1410
SfcI	CTRYAG	2 cut(s)	381, 1430
SinI	GGWCC	2 cut(s)	42, 457
SmiI	ATTTAAAT	1 cut(s)	1311
SmlI	CTYRAG	2 cut(s)	682, 950
SmoI	CTYRAG	2 cut(s)	682, 950
SphI	GCATGC	1 cut(s)	1279
SsiI	CCGC	3 cut(s)	8, 343, 519
SspI	AATATT	1 cut(s)	1029
SspMI	CTAG	1 cut(s)	992
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	494, 1158
StyI	CCWWGG	2 cut(s)	630, 1109
SwaI	ATTTAAAT	1 cut(s)	1311
TaaI	ACNGT	2 cut(s)	108, 618
TaqI	TCGA	2 cut(s)	762, 1289
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	667, 1140
Tru1I	TTAA	8 cut(s)	389, 554, 575, 718, 892, 1310, 1388, 1487
Tru9I	TTAA	8 cut(s)	389, 554, 575, 718, 892, 1310, 1388, 1487
TscAI	CASTG	2 cut(s)	872, 888
TseFI	GTSAC	1 cut(s)	1259
TseI	GCWGC	2 cut(s)	76, 301
Tsp45I	GTSAC	1 cut(s)	1259
TspDTI	ATGAA	3 cut(s)	478, 545, 973
TspRI	CASTG	2 cut(s)	872, 888
VpaK11BI	GGWCC	2 cut(s)	42, 457
XapI	RAATTY	3 cut(s)	96, 253, 1529
XceI	RCATGY	2 cut(s)	349, 1279
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 438
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	1 cut(s)	992
Zsp2I	ATGCAT	2 cut(s)	126, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.