Rroxscaffold_6G00392950

kinesin light chain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
12741845 .. 12744727
2883 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00392950.1

Sequence Viewer

Length: 384 bp
ATGCATATGGACATTCTCATTTTGAATTTGATGGATGTATTGTACTTACAGTTGCAAGCTTCTGATGCTCTCGGCCTTTTGGAGATCACAAAGAAACAATTACAAGGGTCAAAGCAGTCTGAGCATGCACCTAATATCGAAGCTGAGAATGCACTATTTAAATGTATATCTGCTTACAAAGAGTTCGTAACTGAGAGATCAATCCCTGAGTCTCCTGAAACAAAGGTCGAGTATCTTAAATGTTTGAAGCATCTTTTGAGCTTGAATAGTGATAGAACTACAGAAAGAACACAGCACTCTACTGGAGTCAATTTGCAAGATCTGAGAGATGAAATTAAGCGTCTTGAAGTTGAACTTTCTCCTCATAGGAAACGCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.66

Weight (kDa)

6.52

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 25, 378
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 5 cut(s) 25, 247, 265, 347, 353
AluBI AGCT 3 cut(s) 59, 143, 261
AluI AGCT 3 cut(s) 59, 143, 261
Alw26I GTCTC 1 cut(s) 216
AoxI GGCC 1 cut(s) 73
ApoI RAATTY 2 cut(s) 25, 378
BccI CCATC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 319
BmsI GCATC 2 cut(s) 55, 259
BpmI CTGGAG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 307
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 5 cut(s) 111, 135, 183, 198, 314
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 84, 197, 319
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 5 cut(s) 112, 136, 184, 199, 315
BsrI ACTGG 1 cut(s) 307
BssMI GATC 3 cut(s) 84, 197, 319
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 57, 126
BstDEI CTNAG 5 cut(s) 120, 144, 192, 207, 323
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 87, 200, 322
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 3 cut(s) 84, 197, 319
BstMWI GCNNNNNNNGC 3 cut(s) 65, 121, 149
BstNSI RCATGY 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 57, 126
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 125
CviJI RGCY 4 cut(s) 59, 75, 143, 261
CviKI_1 RGCY 4 cut(s) 59, 75, 143, 261
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 5 cut(s) 120, 144, 192, 207, 323
DpnI GATC 3 cut(s) 86, 199, 321
DpnII GATC 3 cut(s) 84, 197, 319
DraI TTTAAA 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 128
FaiI YATR 5 cut(s) 6, 8, 126, 167, 366
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 1 cut(s) 124
FauNDI CATATG 1 cut(s) 6
FokI GGATG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 2 cut(s) 209, 306
Hpy188I TCNGA 3 cut(s) 64, 121, 324
Hpy188III TCNNGA 2 cut(s) 215, 344
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 4, 55, 128, 152, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 121, 149
HpyF3I CTNAG 5 cut(s) 120, 144, 192, 207, 323
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 3 cut(s) 84, 197, 319
LpnPI CCDG 3 cut(s) 219, 228, 288
LweI GCATC 2 cut(s) 55, 259
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 86, 199, 321
MboI GATC 3 cut(s) 84, 197, 319
MflI RGATCY 1 cut(s) 319
MluCI AATT 5 cut(s) 25, 98, 310, 333, 378
MlyI GAGTC 2 cut(s) 218, 315
MnlI CCTC 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 159, 237, 336
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 65, 121, 149
NdeI CATATG 1 cut(s) 6
NdeII GATC 3 cut(s) 84, 197, 319
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PctI GAATGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 217, 314
PpsI GAGTC 2 cut(s) 217, 314
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 159, 237, 336
Sau3AI GATC 3 cut(s) 84, 197, 319
SchI GAGTC 2 cut(s) 218, 315
SetI ASST 5 cut(s) 61, 133, 145, 228, 263
SfaNI GCATC 2 cut(s) 55, 259
SfcI CTRYAG 1 cut(s) 279
SmiI ATTTAAAT 1 cut(s) 160
SphI GCATGC 1 cut(s) 128
Sse9I AATT 5 cut(s) 25, 98, 310, 333, 378
SwaI ATTTAAAT 1 cut(s) 160
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 138, 228
TasI AATT 5 cut(s) 25, 98, 310, 333, 378
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 3 cut(s) 159, 237, 336
Tru9I TTAA 3 cut(s) 159, 237, 336
TspDTI ATGAA 1 cut(s) 345
XapI RAATTY 2 cut(s) 25, 378
XceI RCATGY 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.