Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002412

Physical Location & Seq

Genomic Coordinates Reverse (-)

41433491 .. 41437351

Gene Structure 3861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGACGACCTCAGTTTCCGGATCGGCATCTCATCAACTCCAGATTTTCATCAAAAACCCAAGTCTGAGCATGCACCTAATATCGAAGCTGAGAATGCACTATTTAAATGTATATCTGCTTACAGAGAGGGTCCCAATAAATTTTTGGAAAGTAGTCGATCTTTTTGGGTACTGAACTTGGATCCATCTTCTGCTTTCGTAACTGAGAGATCAATCCCTGAGTCTCCTGAAACAAAGGCCGAGTATCTTAAATGTTTGAAGCATCTTTTGAGCTTGAATAGTGATAGCACTACAGAAAGAACACAGCAATCTACTGGAGTCAATTTGCAAGATCTGAGAGACGAAATTAAGCGTCTTGAAGTTGAACTTTCTCCTCATAGGAAACGCAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

6.43

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37590 AT5G37590
fragaria_vesca	FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190 FvH4_1g30190
malus_domestica	MD17G1268600.v1.1
prunus_persica	Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1 Prupe.3G166300_v2.0.a1
pyrus_communis	pycom17g26710
rosa_chinensis	RchiOBHm_Chr3g0491391
rosa_laevigata	RLG00000022845
rosa_multiflora	Rmu_sc0000293.1_g000001 Rmu_sc0006034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115220 Rroxscaffold_6G00392930 Rroxscaffold_6G00392950 Rroxscaffold_7G00196910
rosa_rugosa	Rorug03G0248800 Rorug03G0249100
rosa_samantha	Rh3AG298500 Rh3BG334300 Rh3CG331300 Rh3DG332800
rosa_wichuraiana	Rw3G026330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	18
AclWI	GGATC	3 cut(s)	29, 176, 189
AcsI	RAATTY	2 cut(s)	140, 390
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	259, 277, 359, 365
AluBI	AGCT	2 cut(s)	89, 273
AluI	AGCT	2 cut(s)	89, 273
Alw26I	GTCTC	2 cut(s)	228, 333
AlwI	GGATC	3 cut(s)	29, 176, 189
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	140, 390
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	181
BccI	CCATC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	228, 333
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	3 cut(s)	132, 133, 183
BmsI	GCATC	2 cut(s)	36, 271
BpmI	CTGGAG	2 cut(s)	24, 336
BsaBI	GATNNNNATC	2 cut(s)	26, 48
BsaWI	WCCGGW	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	2 cut(s)	26, 48
BseAI	TCCGGA	1 cut(s)	18
BseJI	GATNNNNATC	2 cut(s)	26, 48
BseMII	CTCAG	6 cut(s)	25, 57, 81, 195, 210, 326
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	228, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	5 cut(s)	21, 158, 181, 209, 331
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	6 cut(s)	24, 58, 82, 196, 211, 327
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	132, 133, 183
BspPI	GGATC	3 cut(s)	29, 176, 189
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	5 cut(s)	21, 158, 181, 209, 331
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	6 cut(s)	11, 66, 90, 204, 219, 335
BstKTI	GATC	5 cut(s)	24, 161, 184, 212, 334
BstMAI	GTCTC	2 cut(s)	228, 333
BstMBI	GATC	5 cut(s)	21, 158, 181, 209, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	291
BstX2I	RGATCY	2 cut(s)	181, 331
BstYI	RGATCY	2 cut(s)	181, 331
BsuRI	GGCC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	3 cut(s)	89, 239, 273
CviKI_1	RGCY	3 cut(s)	89, 239, 273
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	6 cut(s)	11, 66, 90, 204, 219, 335
DpnI	GATC	5 cut(s)	23, 160, 183, 211, 333
DpnII	GATC	5 cut(s)	21, 158, 181, 209, 331
DraI	TTTAAA	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	74
FaiI	YATR	3 cut(s)	72, 113, 378
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	1 cut(s)	70
GsuI	CTGGAG	2 cut(s)	24, 336
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	221, 318
HpaII	CCGG	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	67, 336
Hpy188III	TCNNGA	4 cut(s)	19, 41, 227, 356
HpyCH4V	TGCA	3 cut(s)	74, 98, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	6 cut(s)	11, 66, 90, 204, 219, 335
Hsp92II	CATG	1 cut(s)	74
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	5 cut(s)	21, 158, 181, 209, 331
LpnPI	CCDG	5 cut(s)	32, 54, 231, 240, 300
LweI	GCATC	2 cut(s)	36, 271
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	23, 160, 183, 211, 333
MboI	GATC	5 cut(s)	21, 158, 181, 209, 331
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	2 cut(s)	181, 331
MluCI	AATT	4 cut(s)	140, 322, 345, 390
MlyI	GAGTC	2 cut(s)	230, 327
MnlI	CCTC	3 cut(s)	20, 121, 384
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	3 cut(s)	105, 249, 348
MspI	CCGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	5 cut(s)	21, 158, 181, 209, 331
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	3 cut(s)	132, 133, 183
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	100
PleI	GAGTC	2 cut(s)	229, 326
PpsI	GAGTC	2 cut(s)	229, 326
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	132, 133, 183
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	181, 331
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	105, 249, 348
Sau3AI	GATC	5 cut(s)	21, 158, 181, 209, 331
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	2 cut(s)	230, 327
SetI	ASST	4 cut(s)	12, 79, 91, 275
SfaNI	GCATC	2 cut(s)	36, 271
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	131
SmiI	ATTTAAAT	1 cut(s)	106
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	140, 322, 345, 390
SwaI	ATTTAAAT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	84, 157
TasI	AATT	4 cut(s)	140, 322, 345, 390
Tru1I	TTAA	3 cut(s)	105, 249, 348
Tru9I	TTAA	3 cut(s)	105, 249, 348
TspDTI	ATGAA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	140, 390
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.