Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g39740 FvH4_6g39740 |
| malus_domestica | MD02G1074700.v1.1 MD09G1137200.v1.1 MD17G1127500.v1.1 |
| prunus_persica | Prupe.3G187700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0153851 RchiOBHm_Chr4g0395161 |
| rosa_laevigata | RLG00000009644 RLG00000009647 |
| rosa_roxburghii | Rroxscaffold_2G00094710 Rroxscaffold_5G00340030 Rroxscaffold_5G00340100 |
| rosa_rugosa | Rorug02G0442500 Rorug03G0359500.1 |
| rosa_samantha | Rh2AG506400 Rh2BG516200 Rh2BG516300 Rh2CG492000 Rh2CG492100 Rh2DG528500 Rh4AG056900 Rh4BG055900 Rh4CG061900 |
| rosa_wichuraiana | Rw2G041560 Rw4G004590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1463 |
| Acc36I | ACCTGC | 1 cut(s) | 264 |
| Acc65I | GGTACC | 1 cut(s) | 252 |
| AccB1I | GGYRCC | 1 cut(s) | 252 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1869 |
| AccI | GTMKAC | 1 cut(s) | 536 |
| AciI | CCGC | 4 cut(s) | 82, 248, 495, 1088 |
| AclWI | GGATC | 3 cut(s) | 92, 762, 2117 |
| AcoI | YGGCCR | 1 cut(s) | 1764 |
| AcsI | RAATTY | 7 cut(s) | 102, 502, 517, 610, 1261, 1722, 1913 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AfaI | GTAC | 3 cut(s) | 254, 1005, 2103 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 69, 453, 546, 1671, 1869 |
| AflII | CTTAAG | 1 cut(s) | 1217 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 880 |
| AjnI | CCWGG | 2 cut(s) | 1892, 2068 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 368, 400, 602, 634 |
| Alw21I | GWGCWC | 2 cut(s) | 1620, 1980 |
| Alw26I | GTCTC | 2 cut(s) | 306, 816 |
| AlwI | GGATC | 3 cut(s) | 92, 762, 2117 |
| AoxI | GGCC | 2 cut(s) | 1346, 1764 |
| ApeKI | GCWGC | 5 cut(s) | 809, 974, 1397, 2073, 2131 |
| ApoI | RAATTY | 7 cut(s) | 102, 502, 517, 610, 1261, 1722, 1913 |
| Asp718I | GGTACC | 1 cut(s) | 252 |
| AsuC2I | CCSGG | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 8 cut(s) | 32, 371, 653, 1415, 1559, 1654, 1657, 1846 |
| BanI | GGYRCC | 1 cut(s) | 252 |
| BanII | GRGCYC | 1 cut(s) | 1620 |
| Bbv12I | GWGCWC | 2 cut(s) | 1620, 1980 |
| BbvCI | CCTCAGC | 1 cut(s) | 1998 |
| BbvI | GCAGC | 5 cut(s) | 821, 986, 1409, 2060, 2143 |
| BccI | CCATC | 8 cut(s) | 201, 617, 865, 1012, 1061, 1198, 1321, 2004 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1757, 1791 |
| BciT130I | CCWGG | 2 cut(s) | 1894, 2070 |
| BciVI | GTATCC | 1 cut(s) | 1890 |
| BclI | TGATCA | 2 cut(s) | 202, 897 |
| BcnI | CCSGG | 1 cut(s) | 64 |
| BcoDI | GTCTC | 2 cut(s) | 306, 816 |
| BfaI | CTAG | 3 cut(s) | 527, 1814, 2136 |
| BfmI | CTRYAG | 1 cut(s) | 2074 |
| BfrI | CTTAAG | 1 cut(s) | 1217 |
| BfuAI | ACCTGC | 1 cut(s) | 264 |
| BfuI | GTATCC | 1 cut(s) | 1890 |
| BglII | AGATCT | 1 cut(s) | 1221 |
| BisI | GCNGC | 5 cut(s) | 810, 975, 1398, 2074, 2132 |
| BlpI | GCTNAGC | 1 cut(s) | 1518 |
| BlsI | GCNGC | 5 cut(s) | 811, 976, 1399, 2075, 2133 |
| Bme1390I | CCNGG | 3 cut(s) | 64, 1894, 2070 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 880 |
| BmiI | GGNNCC | 2 cut(s) | 32, 254 |
| BmrFI | CCNGG | 3 cut(s) | 64, 1894, 2070 |
| BmsI | GCATC | 7 cut(s) | 400, 457, 573, 759, 945, 1294, 1620 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 860, 892 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1998 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1518 |
| BpuEI | CTTGAG | 2 cut(s) | 386, 1176 |
| BpuMI | CCSGG | 1 cut(s) | 64 |
| Bsa29I | ATCGAT | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1052, 1539 |
| BsaI | GGTCTC | 2 cut(s) | 306, 816 |
| BsaWI | WCCGGW | 2 cut(s) | 951, 1902 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 69, 453, 546, 1671, 1869 |
| Bse1I | ACTGG | 3 cut(s) | 1186, 1279, 2126 |
| Bse3DI | GCAATG | 5 cut(s) | 190, 807, 969, 993, 1477 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1052, 1539 |
| BseBI | CCWGG | 2 cut(s) | 1894, 2070 |
| BseCI | ATCGAT | 1 cut(s) | 87 |
| BseGI | GGATG | 5 cut(s) | 628, 960, 1023, 1027, 1309 |
| BseJI | GATNNNNATC | 2 cut(s) | 1052, 1539 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 69, 453, 546, 1671, 1869 |
| BseMI | GCAATG | 5 cut(s) | 190, 807, 969, 993, 1477 |
| BseMII | CTCAG | 7 cut(s) | 22, 134, 579, 858, 1112, 1509, 1989 |
| BseNI | ACTGG | 3 cut(s) | 1186, 1279, 2126 |
| BseRI | GAGGAG | 1 cut(s) | 1258 |
| BseXI | GCAGC | 5 cut(s) | 821, 986, 1409, 2060, 2143 |
| BsgI | GTGCAG | 3 cut(s) | 242, 1824, 2150 |
| BshFI | GGCC | 2 cut(s) | 1348, 1766 |
| BshNI | GGYRCC | 1 cut(s) | 252 |
| BshVI | ATCGAT | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1620, 1980 |
| BsiSI | CCGG | 3 cut(s) | 64, 952, 1903 |
| BslFI | GGGAC | 1 cut(s) | 1344 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 69, 453, 546, 1671, 1869 |
| BsmAI | GTCTC | 2 cut(s) | 306, 816 |
| BsmFI | GGGAC | 1 cut(s) | 1344 |
| BsmI | GAATGC | 2 cut(s) | 430, 802 |
| BsnI | GGCC | 2 cut(s) | 1348, 1766 |
| Bso31I | GGTCTC | 2 cut(s) | 306, 816 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1620, 1980 |
| Bsp1407I | TGTACA | 1 cut(s) | 1003 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1518 |
| BspACI | CCGC | 4 cut(s) | 82, 248, 495, 1088 |
| BspANI | GGCC | 2 cut(s) | 1348, 1766 |
| BspCNI | CTCAG | 7 cut(s) | 21, 133, 580, 859, 1111, 1510, 1990 |
| BspDI | ATCGAT | 1 cut(s) | 87 |
| BspLI | GGNNCC | 2 cut(s) | 32, 254 |
| BspMAI | CTGCAG | 1 cut(s) | 2078 |
| BspMI | ACCTGC | 1 cut(s) | 264 |
| BspPI | GGATC | 3 cut(s) | 92, 762, 2117 |
| BspQI | GCTCTTC | 1 cut(s) | 1625 |
| BspT107I | GGYRCC | 1 cut(s) | 252 |
| BspTI | CTTAAG | 1 cut(s) | 1217 |
| BspTNI | GGTCTC | 2 cut(s) | 306, 816 |
| BsrDI | GCAATG | 5 cut(s) | 190, 807, 969, 993, 1477 |
| BsrGI | TGTACA | 1 cut(s) | 1003 |
| BsrI | ACTGG | 3 cut(s) | 1186, 1279, 2126 |
| BssNAI | GTATAC | 1 cut(s) | 537 |
| Bst1107I | GTATAC | 1 cut(s) | 537 |
| Bst2UI | CCWGG | 2 cut(s) | 1894, 2070 |
| Bst4CI | ACNGT | 3 cut(s) | 133, 359, 1697 |
| Bst6I | CTCTTC | 2 cut(s) | 1625, 2159 |
| BstAFI | CTTAAG | 1 cut(s) | 1217 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 443, 806, 983 |
| BstAUI | TGTACA | 1 cut(s) | 1003 |
| BstC8I | GCNNGC | 9 cut(s) | 190, 495, 807, 923, 1090, 1687, 1780, 1995, 2005 |
| BstEII | GGTNACC | 1 cut(s) | 1660 |
| BstF5I | GGATG | 5 cut(s) | 628, 960, 1023, 1027, 1309 |
| BstMAI | GTCTC | 2 cut(s) | 306, 816 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 189, 434, 443, 806, 983, 1094, 1245, 1291, 1394 |
| BstNI | CCWGG | 2 cut(s) | 1894, 2070 |
| BstNSI | RCATGY | 6 cut(s) | 304, 1371, 1386, 1689, 1993, 1997 |
| BstPI | GGTNACC | 1 cut(s) | 1660 |
| BstSCI | CCNGG | 3 cut(s) | 62, 1892, 2068 |
| BstSFI | CTRYAG | 1 cut(s) | 2074 |
| BstV1I | GCAGC | 5 cut(s) | 821, 986, 1409, 2060, 2143 |
| BstX2I | RGATCY | 2 cut(s) | 754, 1221 |
| BstYI | RGATCY | 2 cut(s) | 754, 1221 |
| BstZ17I | GTATAC | 1 cut(s) | 537 |
| Bsu15I | ATCGAT | 1 cut(s) | 87 |
| BsuI | GTATCC | 1 cut(s) | 1890 |
| BsuRI | GGCC | 2 cut(s) | 1348, 1766 |
| BsuTUI | ATCGAT | 1 cut(s) | 87 |
| BtsCI | GGATG | 5 cut(s) | 628, 960, 1023, 1027, 1309 |
| BtsI | GCAGTG | 1 cut(s) | 2161 |
| BtsIMutI | CAGTG | 5 cut(s) | 129, 1106, 1702, 2133, 2161 |
| BveI | ACCTGC | 1 cut(s) | 264 |
| Cac8I | GCNNGC | 9 cut(s) | 190, 495, 807, 923, 1090, 1687, 1780, 1995, 2005 |
| ClaI | ATCGAT | 1 cut(s) | 87 |
| CseI | GACGC | 1 cut(s) | 545 |
| Csp6I | GTAC | 3 cut(s) | 253, 1004, 2102 |
| CviQI | GTAC | 3 cut(s) | 253, 1004, 2102 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1463 |
| DriI | GACNNNNNGTC | 1 cut(s) | 880 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1463 |
| EaeI | YGGCCR | 1 cut(s) | 1764 |
| Eam1104I | CTCTTC | 2 cut(s) | 1625, 2159 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 880 |
| EarI | CTCTTC | 2 cut(s) | 1625, 2159 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 1618 |
| Eco147I | AGGCCT | 1 cut(s) | 1348 |
| Eco24I | GRGCYC | 1 cut(s) | 1620 |
| Eco31I | GGTCTC | 2 cut(s) | 306, 816 |
| Eco32I | GATATC | 2 cut(s) | 1537, 1575 |
| Eco53kI | GAGCTC | 1 cut(s) | 1618 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| Eco91I | GGTNACC | 1 cut(s) | 1660 |
| EcoICRI | GAGCTC | 1 cut(s) | 1618 |
| EcoO65I | GGTNACC | 1 cut(s) | 1660 |
| EcoRI | GAATTC | 2 cut(s) | 517, 1261 |
| EcoRII | CCWGG | 2 cut(s) | 1892, 2068 |
| EcoRV | GATATC | 2 cut(s) | 1537, 1575 |
| EcoT22I | ATGCAT | 1 cut(s) | 1995 |
| EcoT38I | GRGCYC | 1 cut(s) | 1620 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1734, 1766 |
| FaqI | GGGAC | 1 cut(s) | 1344 |
| FauI | CCCGC | 3 cut(s) | 241, 502, 1081 |
| FbaI | TGATCA | 2 cut(s) | 202, 897 |
| FblI | GTMKAC | 1 cut(s) | 536 |
| Fnu4HI | GCNGC | 5 cut(s) | 810, 975, 1398, 2074, 2132 |
| FokI | GGATG | 5 cut(s) | 635, 967, 1030, 1034, 1316 |
| FriOI | GRGCYC | 1 cut(s) | 1620 |
| Fsp4HI | GCNGC | 5 cut(s) | 810, 975, 1398, 2074, 2132 |
| FspBI | CTAG | 3 cut(s) | 527, 1814, 2136 |
| GluI | GCNGC | 5 cut(s) | 810, 975, 1398, 2074, 2132 |
| HaeIII | GGCC | 2 cut(s) | 1348, 1766 |
| HapII | CCGG | 3 cut(s) | 64, 952, 1903 |
| HgaI | GACGC | 1 cut(s) | 545 |
| HincII | GTYRAC | 2 cut(s) | 298, 1789 |
| HindII | GTYRAC | 2 cut(s) | 298, 1789 |
| HindIII | AAGCTT | 4 cut(s) | 279, 923, 1937, 1962 |
| HinfI | GANTC | 7 cut(s) | 650, 676, 875, 1355, 1648, 1906, 2167 |
| HpaII | CCGG | 3 cut(s) | 64, 952, 1903 |
| HphI | GGTGA | 8 cut(s) | 32, 371, 653, 1415, 1559, 1654, 1657, 1846 |
| Hpy166II | GTNNAC | 5 cut(s) | 298, 537, 1747, 1789, 2104 |
| Hpy188I | TCNGA | 6 cut(s) | 11, 54, 123, 1136, 1269, 2093 |
| Hpy188III | TCNNGA | 7 cut(s) | 398, 680, 821, 996, 1301, 1652, 2203 |
| Hpy8I | GTNNAC | 5 cut(s) | 298, 537, 1747, 1789, 2104 |
| HpyAV | CCTTC | 6 cut(s) | 445, 1008, 1331, 1432, 1497, 1634 |
| HpyCH4III | ACNGT | 3 cut(s) | 133, 359, 1697 |
| HpyCH4IV | ACGT | 1 cut(s) | 1062 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 189, 434, 443, 806, 983, 1094, 1245, 1291, 1394 |
| HpySE526I | ACGT | 1 cut(s) | 1062 |
| KpnI | GGTACC | 1 cut(s) | 256 |
| Ksp22I | TGATCA | 2 cut(s) | 202, 897 |
| LguI | GCTCTTC | 1 cut(s) | 1625 |
| LmnI | GCTCC | 3 cut(s) | 30, 1245, 1886 |
| Lsp1109I | GCAGC | 5 cut(s) | 821, 986, 1409, 2060, 2143 |
| LweI | GCATC | 7 cut(s) | 400, 457, 573, 759, 945, 1294, 1620 |
| MaeI | CTAG | 3 cut(s) | 527, 1814, 2136 |
| MaeII | ACGT | 1 cut(s) | 1062 |
| MaeIII | GTNAC | 7 cut(s) | 133, 353, 703, 1507, 1660, 1691, 2195 |
| MboII | GAAGA | 7 cut(s) | 67, 748, 1030, 1544, 1612, 1858, 2176 |
| MfeI | CAATTG | 1 cut(s) | 941 |
| MflI | RGATCY | 2 cut(s) | 754, 1221 |
| MhlI | GDGCHC | 2 cut(s) | 1620, 1980 |
| MlyI | GAGTC | 2 cut(s) | 869, 2176 |
| MmeI | TCCRAC | 5 cut(s) | 401, 600, 1052, 1390, 2060 |
| Mph1103I | ATGCAT | 1 cut(s) | 1995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2180 |
| MspCI | CTTAAG | 1 cut(s) | 1217 |
| MspI | CCGG | 3 cut(s) | 64, 952, 1903 |
| MspR9I | CCNGG | 3 cut(s) | 64, 1894, 2070 |
| MunI | CAATTG | 1 cut(s) | 941 |
| Mva1269I | GAATGC | 2 cut(s) | 430, 802 |
| MvaI | CCWGG | 2 cut(s) | 1894, 2070 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 189, 434, 443, 806, 983, 1094, 1245, 1291, 1394 |
| NciI | CCSGG | 1 cut(s) | 64 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 254 |
| NmuCI | GTSAC | 4 cut(s) | 703, 1507, 1660, 1691 |
| NsiI | ATGCAT | 1 cut(s) | 1995 |
| NspI | RCATGY | 6 cut(s) | 304, 1371, 1386, 1689, 1993, 1997 |
| PaeI | GCATGC | 2 cut(s) | 1689, 1997 |
| PceI | AGGCCT | 1 cut(s) | 1348 |
| PciSI | GCTCTTC | 1 cut(s) | 1625 |
| PctI | GAATGC | 2 cut(s) | 430, 802 |
| PfeI | GAWTC | 5 cut(s) | 650, 676, 1355, 1648, 1906 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1869 |
| PfoI | TCCNGGA | 1 cut(s) | 1892 |
| PkrI | GCNGC | 5 cut(s) | 811, 976, 1399, 2075, 2133 |
| PleI | GAGTC | 2 cut(s) | 869, 2175 |
| PpsI | GAGTC | 2 cut(s) | 869, 2175 |
| Psp124BI | GAGCTC | 1 cut(s) | 1620 |
| Psp6I | CCWGG | 2 cut(s) | 1892, 2068 |
| PspEI | GGTNACC | 1 cut(s) | 1660 |
| PspGI | CCWGG | 2 cut(s) | 1892, 2068 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 254 |
| PstI | CTGCAG | 1 cut(s) | 2078 |
| PsuI | RGATCY | 2 cut(s) | 754, 1221 |
| RsaI | GTAC | 3 cut(s) | 254, 1005, 2103 |
| RsaNI | GTAC | 3 cut(s) | 253, 1004, 2102 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2180 |
| SacI | GAGCTC | 1 cut(s) | 1620 |
| SapI | GCTCTTC | 1 cut(s) | 1625 |
| SatI | GCNGC | 5 cut(s) | 810, 975, 1398, 2074, 2132 |
| SchI | GAGTC | 2 cut(s) | 869, 2176 |
| ScrFI | CCNGG | 3 cut(s) | 64, 1894, 2070 |
| SduI | GDGCHC | 2 cut(s) | 1620, 1980 |
| SfaNI | GCATC | 7 cut(s) | 400, 457, 573, 759, 945, 1294, 1620 |
| SfcI | CTRYAG | 1 cut(s) | 2074 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2180 |
| SmlI | CTYRAG | 3 cut(s) | 365, 1191, 1217 |
| SmoI | CTYRAG | 3 cut(s) | 365, 1191, 1217 |
| SphI | GCATGC | 2 cut(s) | 1689, 1997 |
| SseBI | AGGCCT | 1 cut(s) | 1348 |
| SsiI | CCGC | 4 cut(s) | 82, 248, 495, 1088 |
| SspI | AATATT | 1 cut(s) | 852 |
| SspMI | CTAG | 3 cut(s) | 527, 1814, 2136 |
| SstI | GAGCTC | 1 cut(s) | 1620 |
| StuI | AGGCCT | 1 cut(s) | 1348 |
| StyD4I | CCNGG | 3 cut(s) | 62, 1892, 2068 |
| TaaI | ACNGT | 3 cut(s) | 133, 359, 1697 |
| TaiI | ACGT | 1 cut(s) | 1065 |
| TaqI | TCGA | 2 cut(s) | 87, 820 |
| TatI | WGTACW | 2 cut(s) | 1003, 2101 |
| TfiI | GAWTC | 5 cut(s) | 650, 676, 1355, 1648, 1906 |
| TscAI | CASTG | 5 cut(s) | 136, 1106, 1702, 2133, 2161 |
| TseFI | GTSAC | 4 cut(s) | 703, 1507, 1660, 1691 |
| TseI | GCWGC | 5 cut(s) | 809, 974, 1397, 2073, 2131 |
| Tsp45I | GTSAC | 4 cut(s) | 703, 1507, 1660, 1691 |
| TspGWI | ACGGA | 1 cut(s) | 902 |
| TspRI | CASTG | 5 cut(s) | 136, 1106, 1702, 2133, 2161 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1869 |
| Vha464I | CTTAAG | 1 cut(s) | 1217 |
| XapI | RAATTY | 7 cut(s) | 102, 502, 517, 610, 1261, 1722, 1913 |
| XceI | RCATGY | 6 cut(s) | 304, 1371, 1386, 1689, 1993, 1997 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2076 |
| XmiI | GTMKAC | 1 cut(s) | 536 |
| XspI | CTAG | 3 cut(s) | 527, 1814, 2136 |
| Zsp2I | ATGCAT | 1 cut(s) | 1995 |