Rh2CG492100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006945
Physical Location & Seq
Forward (+)
65844260 .. 65845018
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG492100.1

Sequence Viewer

Length: 759 bp
ATGCTAATAGAAGGGGTGAATCCAGATCAACTGACCTTTGTTGGGGTGTTGTCTGCATGCAGTCACAGTGGGCTGGTTGATTGGGGATTAAAATTGTTTAAGAGCATGACTCAAGTTAACCTTATTGAACCTCTAGCTGAACACTATGCTTGCATGGTAGACTTGCTTGGCCGTGCAGGGAGGTTAGAGGAAGCCTTTGAAATGGAGAGGGATATGAAGATCAAGGCAACTGCAAGAATGTGGGGTGCATTACTTGGAGCTTCCAGGATACACCGGAATCTAAAGTTTGCCAATTATGCTACGAAGAAACTTTTAGAACTCGAACCTGATAAAACTTCAAATTTTGTGCTATTGTCAAACATGAATGCTGAGGCAGGCAGATGGGATGAGGTTGAAATAGTCAGTATGTTGATTAACCAACGTAAAATGGAGAAGCAACCCGGCCGCAGTTGGATTGAAGTCAGGAATCATGCTATTCTCTTTGATGATCCAGTGCAACCCAGAACAGCAGAGATATGCAGTGTACTGAACTCCCTAGCCAGAGAGATGAAAAACACTAGTTCCTTTGATGAATGTTTTACCACCTACAGGTACGATAAATGGTACACCTTTTCACTTTTCTTAAACTGCTACATTTTAGCAATTTGTAGATTATCAGACTCTTTTGTTAGTGCATATACAAATTATTGGGGTCCTCTTGGTAGAGAACTCCTACATTTCCATGGACATGGCAGGAAAGAAAAAAGATGTTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

252

Amino Acids

28.99

Weight (kDa)

8.12

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 91 - 153 4.3e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 445
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 2 cut(s) 169, 442
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 3 cut(s) 525, 593, 605
AfiI CCNNNNNNNGG 2 cut(s) 42, 588
AgsI TTSAA 5 cut(s) 128, 200, 339, 395, 458
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 2 cut(s) 137, 260
AluI AGCT 2 cut(s) 137, 260
AlwI GGATC 1 cut(s) 482
AoxI GGCC 2 cut(s) 169, 442
ApoI RAATTY 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 692
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 375
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 265
BciVI GTATCC 1 cut(s) 261
BcnI CCSGG 1 cut(s) 441
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 134, 536, 558
BfmI CTRYAG 1 cut(s) 586
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 1 cut(s) 445
BlsI GCNGC 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 265, 441
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 2 cut(s) 265, 441
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 721
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 588
Bse1I ACTGG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 42, 588
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 491
BseX3I CGGCCG 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 171, 444
BsiEI CGRYCG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 274, 441
BslI CCNNNNNNNGG 2 cut(s) 42, 588
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 171, 444
Bsp143I GATC 3 cut(s) 25, 219, 487
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 1 cut(s) 445
BspANI GGCC 2 cut(s) 171, 444
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 693
BspPI GGATC 1 cut(s) 482
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 3 cut(s) 25, 219, 487
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 58, 151, 376
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 3 cut(s) 28, 222, 490
BstMBI GATC 3 cut(s) 25, 219, 487
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 263, 439
BstSFI CTRYAG 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 728
BstZI CGGCCG 1 cut(s) 442
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 2 cut(s) 171, 444
BtgI CCRYGG 1 cut(s) 721
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 3 cut(s) 73, 498, 526
Cac8I GCNNGC 3 cut(s) 58, 151, 376
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 3 cut(s) 524, 592, 604
CviAII CATG 7 cut(s) 57, 106, 154, 361, 470, 722, 728
CviJI RGCY 7 cut(s) 73, 137, 171, 194, 260, 444, 539
CviKI_1 RGCY 7 cut(s) 73, 137, 171, 194, 260, 444, 539
CviQI GTAC 3 cut(s) 524, 592, 604
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 27, 221, 489
DpnII GATC 3 cut(s) 25, 219, 487
EaeI YGGCCR 2 cut(s) 169, 442
EagI CGGCCG 1 cut(s) 442
EclXI CGGCCG 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 692
Eco52I CGGCCG 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 7 cut(s) 60, 109, 157, 364, 473, 725, 731
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 7 cut(s) 56, 105, 153, 360, 469, 721, 727
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 445
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 445
FspBI CTAG 3 cut(s) 134, 536, 558
GluI GCNGC 1 cut(s) 445
HaeIII GGCC 2 cut(s) 171, 444
HapII CCGG 2 cut(s) 274, 441
Hin1II CATG 7 cut(s) 60, 109, 157, 364, 473, 725, 731
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 5 cut(s) 19, 109, 277, 466, 659
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 2 cut(s) 274, 441
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 4 cut(s) 118, 160, 524, 606
Hpy188I TCNGA 1 cut(s) 658
Hpy188III TCNNGA 2 cut(s) 23, 463
Hpy8I GTNNAC 4 cut(s) 118, 160, 524, 606
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 9 cut(s) 56, 60, 153, 176, 233, 248, 496, 519, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 7 cut(s) 60, 109, 157, 364, 473, 725, 731
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 25, 219, 487
LmnI GCTCC 1 cut(s) 257
MaeI CTAG 3 cut(s) 134, 536, 558
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 27, 221, 489
MboI GATC 3 cut(s) 25, 219, 487
MboII GAAGA 2 cut(s) 229, 316
MluCI AATT 5 cut(s) 92, 292, 340, 642, 682
MlyI GAGTC 2 cut(s) 103, 653
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 7 cut(s) 141, 174, 181, 201, 364, 382, 705
MseI TTAA 5 cut(s) 89, 99, 117, 414, 623
MslI CAYNNNNRTG 2 cut(s) 720, 726
MspI CCGG 2 cut(s) 274, 441
MspR9I CCNGG 2 cut(s) 265, 441
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 1 cut(s) 721
NdeII GATC 3 cut(s) 25, 219, 487
NlaIII CATG 7 cut(s) 60, 109, 157, 364, 473, 725, 731
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 19, 277, 466
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 1 cut(s) 446
PleI GAGTC 2 cut(s) 103, 653
PpsI GAGTC 2 cut(s) 103, 653
PpuMI RGGWCCY 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 1 cut(s) 692
PspPPI RGGWCCY 1 cut(s) 692
RsaI GTAC 3 cut(s) 525, 593, 605
RsaNI GTAC 3 cut(s) 524, 592, 604
RseI CAYNNNNRTG 2 cut(s) 720, 726
SaqAI TTAA 5 cut(s) 89, 99, 117, 414, 623
SatI GCNGC 1 cut(s) 445
Sau3AI GATC 3 cut(s) 25, 219, 487
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 2 cut(s) 103, 653
ScrFI CCNGG 2 cut(s) 265, 441
SfcI CTRYAG 1 cut(s) 586
SinI GGWCC 1 cut(s) 692
SmiMI CAYNNNNRTG 2 cut(s) 720, 726
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SpeI ACTAGT 1 cut(s) 557
SphI GCATGC 1 cut(s) 60
Sse9I AATT 5 cut(s) 92, 292, 340, 642, 682
SsiI CCGC 1 cut(s) 445
SspMI CTAG 3 cut(s) 134, 536, 558
StyD4I CCNGG 2 cut(s) 263, 439
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 321
TasI AATT 5 cut(s) 92, 292, 340, 642, 682
TatI WGTACW 1 cut(s) 523
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 3 cut(s) 19, 277, 466
Tru1I TTAA 5 cut(s) 89, 99, 117, 414, 623
Tru9I TTAA 5 cut(s) 89, 99, 117, 414, 623
TscAI CASTG 3 cut(s) 73, 498, 526
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 230, 377, 563, 585
TspRI CASTG 3 cut(s) 73, 498, 526
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 134, 536, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.