RchiOBHm_Chr4g0395161

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006945
Physical Location & Seq
Reverse (-)
10931808 .. 10934606
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36761

Sequence Viewer

Length: 2223 bp
ATGACGACCAGAGCAATTGGTGAAAAGGGCAGCAGCCAAGTATTCATCCAAAATCTCAAGATTACCCAGTTGGGGAAGTCAGGCCGAATCGACGAAGCAGTCAAAGTTTTCTCGCAAATGACTCAAAGGAACACCGTCACATACAACTCCATGATCTCCGCCTGCGCCAAGAATGGTAGACTCGGCCATGCGCGCCACCTGTTCGATAATATGTCTCACAGAAACTTGGTTTCTTGGAACACTATGATTGCAGGGTACCTGCACAGTAATATGGTGGAGGATGCTTATGGGCTTTTTGTTCACATGCCACAAAGAGACCTTTTCTCTTGGACTTTGATGATTACTTGCTACACACGCAACGGCGAGCTTGAGAGAGCCAGACAGCTGTTCAGTTTGCTTCCGGATAAGCGGGACCCGGCTTGTTGGAATGCCATGATTGCAGGGTATGTGAAGAAGAGGAGGTTTGAGGATGCGAAGAGAATGTTTGATGAAATGCCGGTGAAGAATTTAGTTTCTTGGAATTCGATGCTAGCGGGGTATACTAAGAATGGGGAGATGTGTTTTGGGGTGAAGTTTTTTGAGGAGATGCCGGAGAGGAATGTGGTTTCGTGGAATTTGATGCTGGATGGATTTGTTCAGGTTGGTGAGTTGGATAATGCTTGGAAGTTTTTTGAGAAGATTCCGGAGCCTAATGTTGTTTCGTGGGTGACAATGTTGTGTGGGTTTGCGCAAAATGGGAAGATTGCGCAGGCGGAGGATCTGTTTGAGAAGATGCCGAGTAGAAATGTGGTTGCTTGGAATGTAATGCTTGCAGCCTATGTACAAGACCGCCGAATTGACAAGGCTGCTGAAATATTCAGGGATATGCCGGAGATGGATTCAGTGTCATGGACTACAATGATCAATGGGTATGTTCGCGTTGGCAAGCTTGACGAAGCAAGGCAGTTGCTCAACCGGATGCCGTACAGGAACATTGCAGCACAAACAGCAATGATATCTGGATATGCTCATAATGGAAGGATGGATGAAGCAAGTCAGATCTTCAATCAGATTGCCACGCGTGATGTTGTTTGTTGGAACACCATGATTGCAGGCTATGCTCAGTGTGGCAGAATGGTTGAAGCTCTATCTCTTTTCAGAAACATGACCAACAAGGATGTAGTTTCTTGGAATACTATGATTACTGGTTATGCTCAAGTAGGGGAGATGGACAAAGCACTTCAAATCTTTGAGGAGATGGGGGAGAAGAACATAGTTTCTTGGAATTCTCTAATTACAGGTTATGTGCAGAACGGGTTATATCTGGATGCACTGAAGAGTATTGTGATTATGGGACAGGAAGGAAAGAGGCTTGATCAGTCAACTTTTTCATGTGGTCTAAGTGCATGTGCCAATCTTGCAGCTTTTCGACTGGGAAGGCAACTTCACCAAATGGTTGTGAAGACTAGCTATCTAAGTGATTTGTTTGTCAGCAATGCCCTGATTACTATGTATGCTAAATGTGGAATGGTTGCGAATGCTAATCTTGTGTTTGAAGATATCAATCATGGCGATATTGTTTCTTGGAATTCTTTGATATCTGGGTATTCTCTAAATGGATATGGTAAAGAGGCAGTAGCACTCTTTCTAGAGATGCTAACAGAAGGGGTGAATCCAGATCAAGTGACCTTTGTTGGGGTGTTGTCTGCATGCAGTCACAGTGGGCTGGTTGATCAGGGATTAAAACTGTTTAAGAGCATGACTGAAGTTCACCTTATTGAACCTGTAGCCGAACACTATGCTTGCATGGTTGACTTGCTTGGCCGTGCAGGAAGGTTAGAGGAAGCCTTTGAAATGGTAAGGGATATGAAGATCAAGGCAACTGCCAGAATATGGGGTGCATTGCTTGGAGCTTCCAGGATACACCGAAATTTACAATTTGGCAAGTATGCTACCGAGAAGCTTTTAGAACTTGAACCTGATAAAGCTTCAAATTATGTACTCTTATCGAACATGCATGCTGAGGCAGGCAGATGGGATGAGGTTGAGAGAGTCAGGGTGTTAATGAAGGAAAGTGATACAGACAAGCAACCCGGCTGCAGTTGGATTGAAGTCAGGAATCAGGTGCATGCTTTTCTCTTTGATGATCCAGTGCAACCCAGAACATCAGAGATATGCAGTGTATTGAAGTCTCTAACCACAGAGATGACAAACACAAGTTCCTTCATGGCATCTTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

740

Amino Acids

83.65

Weight (kDa)

6.32

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 43 - 72 1.5e-06 PPR repeat
PPR_2 PF13041 43 - 75 2.4e-07 PPR repeat family
PPR PF01535 46 - 75 2.9e-07 PPR repeat
PPR_2 PF13041 75 - 106 4.3e-06 PPR repeat family
PPR_2 PF13041 140 - 169 2.4e-06 PPR repeat family
PPR PF01535 141 - 169 3.7e-07 PPR repeat
PPR_2 PF13041 230 - 263 2.4e-06 PPR repeat family
PPR_1 PF12854 292 - 320 9.3e-07 PPR repeat
PPR_2 PF13041 293 - 325 2e-07 PPR repeat family
PPR PF01535 295 - 324 4.9e-08 PPR repeat
PPR_2 PF13041 354 - 386 6.3e-08 PPR repeat family
PPR_1 PF12854 355 - 383 1.8e-06 PPR repeat
PPR PF01535 357 - 386 5.5e-08 PPR repeat
PPR_2 PF13041 385 - 418 1.4e-09 PPR repeat family
PPR_1 PF12854 386 - 413 2.5e-07 PPR repeat
PPR PF01535 388 - 418 1.8e-09 PPR repeat
PPR_2 PF13041 416 - 465 2.3e-06 PPR repeat family
PPR_2 PF13041 518 - 565 3.8e-11 PPR repeat family
PPR PF01535 520 - 550 4.5e-08 PPR repeat
E_motif PF20431 635 - 697 6.9e-24 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc16I TGCGCA 2 cut(s) 729, 747
Acc36I ACCTGC 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 1872
AccI GTMKAC 2 cut(s) 178, 539
AccII CGCG 3 cut(s) 193, 918, 1060
AccIII TCCGGA 2 cut(s) 400, 682
AciI CCGC 5 cut(s) 159, 409, 533, 752, 829
AclWI GGATC 2 cut(s) 765, 2120
AcoI YGGCCR 2 cut(s) 184, 1801
AcsI RAATTY 6 cut(s) 505, 520, 613, 1264, 1567, 1909
AcuI CTGAAG 2 cut(s) 1334, 1764
AfaI GTAC 4 cut(s) 257, 822, 965, 1980
AfiI CCNNNNNNNGG 3 cut(s) 72, 1674, 1872
AflIII ACRYGT 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 1895
AluBI AGCT 9 cut(s) 367, 385, 928, 1124, 1403, 1449, 1892, 1942, 1967
AluI AGCT 9 cut(s) 367, 385, 928, 1124, 1403, 1449, 1892, 1942, 1967
Alw26I GTCTC 3 cut(s) 219, 309, 2175
AlwI GGATC 2 cut(s) 765, 2120
Aor13HI TCCGGA 2 cut(s) 400, 682
AoxI GGCC 3 cut(s) 82, 184, 1801
ApeKI GCWGC 7 cut(s) 30, 33, 812, 845, 977, 1400, 2076
ApoI RAATTY 6 cut(s) 505, 520, 613, 1264, 1567, 1909
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 5 cut(s) 167, 193, 195, 730, 748
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 2 cut(s) 416, 2073
AsuHPI GGTGA 8 cut(s) 32, 511, 580, 656, 718, 1418, 1660, 1742
AsuNHI GCTAGC 1 cut(s) 529
AvaII GGWCC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 1448
BbvCI CCTCAGC 1 cut(s) 2001
BbvI GCAGC 7 cut(s) 42, 45, 824, 832, 989, 1412, 2063
BccI CCATC 6 cut(s) 620, 868, 1015, 1201, 1231, 2007
BceAI ACGGC 3 cut(s) 376, 946, 1788
BcgI CGANNNNNNTGC 2 cut(s) 1760, 1794
BciT130I CCWGG 1 cut(s) 1897
BciVI GTATCC 1 cut(s) 1893
BclI TGATCA 3 cut(s) 900, 1354, 1711
BcnI CCSGG 2 cut(s) 416, 2073
BcoDI GTCTC 3 cut(s) 219, 309, 2175
BfaI CTAG 3 cut(s) 530, 1446, 1628
BfmI CTRYAG 2 cut(s) 1764, 2077
BfuAI ACCTGC 1 cut(s) 267
BfuI GTATCC 1 cut(s) 1893
BglII AGATCT 1 cut(s) 1038
BisI GCNGC 7 cut(s) 31, 34, 813, 846, 978, 1401, 2077
BlsI GCNGC 7 cut(s) 32, 35, 814, 847, 979, 1402, 2078
Bme1390I CCNGG 3 cut(s) 416, 1897, 2073
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 4 cut(s) 257, 413, 414, 687
BmrFI CCNGG 3 cut(s) 416, 1897, 2073
BmrI ACTGGG 2 cut(s) 61, 1421
BmtI GCTAGC 1 cut(s) 533
BmuI ACTGGG 2 cut(s) 61, 1421
BpiI GAAGAC 1 cut(s) 1448
Bpu10I CCTNAGC 1 cut(s) 2001
BpuEI CTTGAG 3 cut(s) 41, 389, 1179
BpuMI CCSGG 2 cut(s) 416, 2073
BsaBI GATNNNNATC 1 cut(s) 1542
BsaI GGTCTC 1 cut(s) 309
BsaWI WCCGGW 3 cut(s) 400, 682, 954
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 1674, 1872
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 4 cut(s) 67, 1189, 1416, 2129
Bse3DI GCAATG 4 cut(s) 972, 996, 1480, 1880
Bse8I GATNNNNATC 1 cut(s) 1542
BseAI TCCGGA 2 cut(s) 400, 682
BseBI CCWGG 1 cut(s) 1897
BseJI GATNNNNATC 1 cut(s) 1542
BseLI CCNNNNNNNGG 3 cut(s) 72, 1674, 1872
BseMI GCAATG 4 cut(s) 972, 996, 1480, 1880
BseMII CTCAG 2 cut(s) 1115, 1992
BseNI ACTGG 4 cut(s) 67, 1189, 1416, 2129
BsePI GCGCGC 1 cut(s) 191
BseRI GAGGAG 3 cut(s) 472, 596, 1247
BseXI GCAGC 7 cut(s) 42, 45, 824, 832, 989, 1412, 2063
BsgI GTGCAG 3 cut(s) 245, 1307, 1827
Bsh1236I CGCG 3 cut(s) 193, 918, 1060
BshFI GGCC 3 cut(s) 84, 186, 1803
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 8 cut(s) 401, 416, 497, 590, 683, 869, 955, 2073
BslFI GGGAC 2 cut(s) 425, 1347
BslI CCNNNNNNNGG 3 cut(s) 72, 1674, 1872
BsmAI GTCTC 3 cut(s) 219, 309, 2175
BsmFI GGGAC 2 cut(s) 425, 1347
BsmI GAATGC 2 cut(s) 433, 1522
BsnI GGCC 3 cut(s) 84, 186, 1803
Bso31I GGTCTC 1 cut(s) 309
Bsp13I TCCGGA 2 cut(s) 400, 682
Bsp1407I TGTACA 1 cut(s) 820
Bsp143I GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
BspACI CCGC 5 cut(s) 159, 409, 533, 752, 829
BspANI GGCC 3 cut(s) 84, 186, 1803
BspCNI CTCAG 2 cut(s) 1114, 1993
BspEI TCCGGA 2 cut(s) 400, 682
BspFNI CGCG 3 cut(s) 193, 918, 1060
BspLI GGNNCC 4 cut(s) 257, 413, 414, 687
BspMAI CTGCAG 1 cut(s) 2081
BspMI ACCTGC 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 2 cut(s) 765, 2120
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 4 cut(s) 972, 996, 1480, 1880
BsrFI RCCGGY 1 cut(s) 496
BsrGI TGTACA 1 cut(s) 820
BsrI ACTGG 4 cut(s) 67, 1189, 1416, 2129
BssAI RCCGGY 1 cut(s) 496
BssHII GCGCGC 1 cut(s) 191
BssMI GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
BssNAI GTATAC 1 cut(s) 540
Bst1107I GTATAC 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 1897
Bst4CI ACNGT 4 cut(s) 136, 266, 1700, 1728
Bst6I CTCTTC 3 cut(s) 449, 470, 1310
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstAUI TGTACA 1 cut(s) 820
BstDEI CTNAG 5 cut(s) 543, 1101, 1379, 1454, 2001
BstFNI CGCG 3 cut(s) 193, 918, 1060
BstHHI GCGC 5 cut(s) 167, 193, 195, 730, 748
BstKTI GATC 9 cut(s) 156, 760, 903, 1041, 1357, 1660, 1714, 1854, 2128
BstMAI GTCTC 3 cut(s) 219, 309, 2175
BstMBI GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
BstMWI GCNNNNNNNGC 6 cut(s) 192, 354, 437, 986, 1097, 1397
BstNI CCWGG 1 cut(s) 1897
BstNSI RCATGY 6 cut(s) 307, 1389, 1692, 1996, 2000, 2111
BstSCI CCNGG 3 cut(s) 414, 1895, 2071
BstSFI CTRYAG 2 cut(s) 1764, 2077
BstUI CGCG 3 cut(s) 193, 918, 1060
BstV1I GCAGC 7 cut(s) 42, 45, 824, 832, 989, 1412, 2063
BstV2I GAAGAC 1 cut(s) 1448
BstX2I RGATCY 2 cut(s) 757, 1038
BstYI RGATCY 2 cut(s) 757, 1038
BstZ17I GTATAC 1 cut(s) 540
BsuI GTATCC 1 cut(s) 1893
BsuRI GGCC 3 cut(s) 84, 186, 1803
BtsI GCAGTG 1 cut(s) 2164
BtsIMutI CAGTG 6 cut(s) 888, 1109, 1310, 1705, 2136, 2164
BveI ACCTGC 1 cut(s) 267
CfoI GCGC 5 cut(s) 167, 193, 195, 730, 748
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 1 cut(s) 412
Csp6I GTAC 4 cut(s) 256, 821, 964, 1979
CviQI GTAC 4 cut(s) 256, 821, 964, 1979
DdeI CTNAG 5 cut(s) 543, 1101, 1379, 1454, 2001
DpnI GATC 9 cut(s) 155, 759, 902, 1040, 1356, 1659, 1713, 1853, 2127
DpnII GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 2 cut(s) 184, 1801
Eam1104I CTCTTC 3 cut(s) 449, 470, 1310
EarI CTCTTC 3 cut(s) 449, 470, 1310
EciI GGCGGA 2 cut(s) 148, 767
Eco31I GGTCTC 1 cut(s) 309
Eco32I GATATC 3 cut(s) 996, 1540, 1578
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 1334, 1764
EcoO109I RGGNCCY 1 cut(s) 412
EcoRI GAATTC 3 cut(s) 520, 1264, 1567
EcoRII CCWGG 1 cut(s) 1895
EcoRV GATATC 3 cut(s) 996, 1540, 1578
EcoT22I ATGCAT 1 cut(s) 1998
FalI AAGNNNNNCTT 2 cut(s) 1737, 1769
FaqI GGGAC 2 cut(s) 425, 1347
FauI CCCGC 2 cut(s) 402, 526
FbaI TGATCA 3 cut(s) 900, 1354, 1711
FblI GTMKAC 2 cut(s) 178, 539
Fnu4HI GCNGC 7 cut(s) 31, 34, 813, 846, 978, 1401, 2077
Fsp4HI GCNGC 7 cut(s) 31, 34, 813, 846, 978, 1401, 2077
FspBI CTAG 3 cut(s) 530, 1446, 1628
FspI TGCGCA 2 cut(s) 729, 747
GlaI GCGC 5 cut(s) 166, 192, 194, 729, 747
GluI GCNGC 7 cut(s) 31, 34, 813, 846, 978, 1401, 2077
HaeIII GGCC 3 cut(s) 84, 186, 1803
HapII CCGG 8 cut(s) 401, 416, 497, 590, 683, 869, 955, 2073
HhaI GCGC 5 cut(s) 167, 193, 195, 730, 748
Hin6I GCGC 5 cut(s) 165, 191, 193, 728, 746
HinP1I GCGC 5 cut(s) 165, 191, 193, 728, 746
HincII GTYRAC 2 cut(s) 1362, 1792
HindII GTYRAC 2 cut(s) 1362, 1792
HindIII AAGCTT 3 cut(s) 926, 1940, 1965
HinfI GANTC 8 cut(s) 87, 121, 180, 679, 878, 1651, 2031, 2098
HpaII CCGG 8 cut(s) 401, 416, 497, 590, 683, 869, 955, 2073
HphI GGTGA 8 cut(s) 32, 511, 580, 656, 718, 1418, 1660, 1742
Hpy166II GTNNAC 6 cut(s) 179, 301, 540, 1362, 1750, 1792
Hpy188I TCNGA 4 cut(s) 1038, 1050, 1139, 2149
Hpy188III TCNNGA 8 cut(s) 58, 401, 683, 999, 1304, 1628, 1655, 2095
Hpy8I GTNNAC 6 cut(s) 179, 301, 540, 1362, 1750, 1792
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 7 cut(s) 1011, 1334, 1410, 1637, 1806, 2041, 2212
HpyCH4III ACNGT 4 cut(s) 136, 266, 1700, 1728
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 354, 437, 986, 1097, 1397
HpyF3I CTNAG 5 cut(s) 543, 1101, 1379, 1454, 2001
HspAI GCGC 5 cut(s) 165, 191, 193, 728, 746
KflI GGGWCCC 1 cut(s) 412
Kpn2I TCCGGA 2 cut(s) 400, 682
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 3 cut(s) 900, 1354, 1711
Kzo9I GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
LmnI GCTCC 2 cut(s) 685, 1889
Lsp1109I GCAGC 7 cut(s) 42, 45, 824, 832, 989, 1412, 2063
MaeI CTAG 3 cut(s) 530, 1446, 1628
MaeIII GTNAC 4 cut(s) 136, 706, 1663, 1694
MalI GATC 9 cut(s) 155, 759, 902, 1040, 1356, 1659, 1713, 1853, 2127
MboI GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 757, 1038
MluI ACGCGT 1 cut(s) 1058
MlyI GAGTC 3 cut(s) 115, 174, 2040
MmeI TCCRAC 4 cut(s) 404, 630, 1055, 2063
Mph1103I ATGCAT 1 cut(s) 1998
MroI TCCGGA 2 cut(s) 400, 682
MseI TTAA 3 cut(s) 1721, 1731, 2042
MslI CAYNNNNRTG 1 cut(s) 2183
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 8 cut(s) 401, 416, 497, 590, 683, 869, 955, 2073
MspR9I CCNGG 3 cut(s) 416, 1897, 2073
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 433, 1522
MvaI CCWGG 1 cut(s) 1897
MvnI CGCG 3 cut(s) 193, 918, 1060
MwoI GCNNNNNNNGC 6 cut(s) 192, 354, 437, 986, 1097, 1397
NciI CCSGG 2 cut(s) 416, 2073
NdeII GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
NheI GCTAGC 1 cut(s) 529
NlaIV GGNNCC 4 cut(s) 257, 413, 414, 687
NmeAIII GCCGAG 2 cut(s) 162, 801
NmuCI GTSAC 4 cut(s) 136, 706, 1663, 1694
NsbI TGCGCA 2 cut(s) 729, 747
NsiI ATGCAT 1 cut(s) 1998
NspI RCATGY 6 cut(s) 307, 1389, 1692, 1996, 2000, 2111
PaeI GCATGC 3 cut(s) 1692, 2000, 2111
PauI GCGCGC 1 cut(s) 191
PctI GAATGC 2 cut(s) 433, 1522
PfeI GAWTC 5 cut(s) 87, 679, 878, 1651, 2098
PflMI CCANNNNNTGG 1 cut(s) 1872
PfoI TCCNGGA 1 cut(s) 1895
PkrI GCNGC 7 cut(s) 32, 35, 814, 847, 979, 1402, 2078
PleI GAGTC 3 cut(s) 115, 174, 2039
PpsI GAGTC 3 cut(s) 115, 174, 2039
PpuMI RGGWCCY 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 1895
PspGI CCWGG 1 cut(s) 1895
PspN4I GGNNCC 4 cut(s) 257, 413, 414, 687
PspPI GGNCC 1 cut(s) 412
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 2081
PsuI RGATCY 2 cut(s) 757, 1038
PteI GCGCGC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 4 cut(s) 257, 822, 965, 1980
RsaNI GTAC 4 cut(s) 256, 821, 964, 1979
RseI CAYNNNNRTG 1 cut(s) 2183
SaqAI TTAA 3 cut(s) 1721, 1731, 2042
SatI GCNGC 7 cut(s) 31, 34, 813, 846, 978, 1401, 2077
Sau3AI GATC 9 cut(s) 153, 757, 900, 1038, 1354, 1657, 1711, 1851, 2125
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 3 cut(s) 115, 174, 2040
ScrFI CCNGG 3 cut(s) 416, 1897, 2073
SfcI CTRYAG 2 cut(s) 1764, 2077
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 2183
SmlI CTYRAG 3 cut(s) 56, 368, 1194
SmoI CTYRAG 3 cut(s) 56, 368, 1194
SphI GCATGC 3 cut(s) 1692, 2000, 2111
SsiI CCGC 5 cut(s) 159, 409, 533, 752, 829
SspI AATATT 1 cut(s) 855
SspMI CTAG 3 cut(s) 530, 1446, 1628
StyD4I CCNGG 3 cut(s) 414, 1895, 2071
TaaI ACNGT 4 cut(s) 136, 266, 1700, 1728
TaqI TCGA 5 cut(s) 90, 204, 524, 1408, 1988
TatI WGTACW 2 cut(s) 820, 1978
TfiI GAWTC 5 cut(s) 87, 679, 878, 1651, 2098
Tru1I TTAA 3 cut(s) 1721, 1731, 2042
Tru9I TTAA 3 cut(s) 1721, 1731, 2042
TscAI CASTG 6 cut(s) 888, 1109, 1317, 1705, 2136, 2164
TseFI GTSAC 4 cut(s) 136, 706, 1663, 1694
TseI GCWGC 7 cut(s) 30, 33, 812, 845, 977, 1400, 2076
Tsp45I GTSAC 4 cut(s) 136, 706, 1663, 1694
TspDTI ATGAA 7 cut(s) 34, 504, 1041, 1359, 1862, 2060, 2194
TspRI CASTG 6 cut(s) 888, 1109, 1317, 1705, 2136, 2164
Van91I CCANNNNNTGG 1 cut(s) 1872
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 6 cut(s) 505, 520, 613, 1264, 1567, 1909
XbaI TCTAGA 1 cut(s) 1627
XceI RCATGY 6 cut(s) 307, 1389, 1692, 1996, 2000, 2111
XmiI GTMKAC 2 cut(s) 178, 539
XspI CTAG 3 cut(s) 530, 1446, 1628
Zsp2I ATGCAT 1 cut(s) 1998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.