Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006945

Physical Location & Seq

Genomic Coordinates Reverse (-)

16084069 .. 16085755

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCTTGCAGGGTATACCAAGAATAGGGAAATGTGTTTCGGGTTGAGGTTTTTTGCGGAGATGCCGGCGAGGAACATGGTTTCGTGGAATTGGATGTTGGATAGGTTTGTGCAGGTTGGTGATTTGGATTCTGCTTGGCAGTTTTTTGAGAAGATTCCAGACCCGAATATTGTTTCGTGGGTTACAATGTTGTGTGGGTTTGCGCAAAATGGGAAGATTGCGCAGGCAGAGGACCTCTTTGAGCAGACGCCAAGTAGAAATATGGTTGCTTGGAATGCAATGCTTGCAGGCTATGTTCAAGACCACCAAATTGACAAGGCTGTGAAAATTTTTAGGGATATGCCAGAGATGGATTCTGTATCATGGACTACAATGATCAATGGGTATGTTAGAGTTGGCAAGCTTGACAAAGCAAGGGAATTGCTAAACCGGATGCCATACAAGAACATTGCAGCACAAACAGCAATGATATCTGGATATGCTCATAATGGAAGGATGGATAAAGCAAGTCAGATCTTTAATCAGATTGCCATTCGTGATGGTGTTTGTCGGAACACAATGATTGCAGGCTATGCTAAGTGGGAGATGGATAAAGCCCTTCAAATCTTTGAGGAGACGGGCGAGAAGAACATAGTTTCTTGGAATTCTCTAATTACGGGTTATGTGCAGAACGGGTTATATCTGGATGCACTTAAGAGTATTGTGATCATGGGACAGGAAAGAAAGAGGCCTGATCAGTCAACTTTTTCATGTGGTCTAAGTGCATGTGCTAATCTTGCAGCTTTACAAATGGGACGGCAACTTCACCATTTGGTTGTGAAGACTGGCTATCTAAATGATTTGTTTGTCAGCAATGCCCTGATTACGATGTATGCTAAATGTGGAACGGTTGTGAGTGCTAAACTAGCGTTCGAAGATATCAATCATGGGGATATTATTCCAAGATATCTGGGGAGGTTAGAGGAAGCCTTCAAAATGGTGAGGGATATGAAGATCAAGGAAACTGCGAGAATGTGGGGTGCATTACTTGGAGCTTCCCGGATACACCGGAATCTAAAATGGGATGAGGTTGAAAGAGTCAGTATGTTGATGAACCAACGTAAAATGGAGAAGCAACCCGGCCGCAGTCGGATTGAAGTCAGGAATCAGGTGCATGCCTTTCTCTTTGATGATCCAGTGCAACCCAGAACAGCAGAGATATGCAGTGTACTGAACTCCCTAGCCAGAGAGATGAAAAACACTAGTTCCTTCATGACATCTTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

422

Amino Acids

48.24

Weight (kDa)

9.02

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	87 - 116	2.9e-06	PPR repeat family
PPR_1	PF12854	117 - 145	8e-07	PPR repeat
PPR_2	PF13041	118 - 150	1.5e-07	PPR repeat family
PPR	PF01535	120 - 149	1.8e-08	PPR repeat
PPR_2	PF13041	209 - 258	3.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39740 FvH4_6g39740
malus_domestica	MD02G1074700.v1.1 MD09G1137200.v1.1 MD17G1127500.v1.1
prunus_persica	Prupe.3G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153851 RchiOBHm_Chr4g0395161
rosa_laevigata	RLG00000009644 RLG00000009647
rosa_roxburghii	Rroxscaffold_2G00094710 Rroxscaffold_5G00340030 Rroxscaffold_5G00340100
rosa_rugosa	Rorug02G0442500 Rorug03G0359500.1
rosa_samantha	Rh2AG506400 Rh2BG516200 Rh2BG516300 Rh2CG492000 Rh2CG492100 Rh2DG528500 Rh4AG056900 Rh4BG055900 Rh4CG061900
rosa_wichuraiana	Rw2G041560 Rw4G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	204, 222
Acc36I	ACCTGC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	2 cut(s)	56, 1123
AclWI	GGATC	1 cut(s)	1166
AcoI	YGGCCR	1 cut(s)	1120
AcsI	RAATTY	2 cut(s)	327, 643
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	1209
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	5 cut(s)	299, 602, 973, 1073, 1136
AhlI	ACTAGT	1 cut(s)	1241
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	3 cut(s)	403, 782, 1034
AluI	AGCT	3 cut(s)	403, 782, 1034
Alw26I	GTCTC	1 cut(s)	608
AlwI	GGATC	1 cut(s)	1166
AoxI	GGCC	2 cut(s)	728, 1120
ApeKI	GCWGC	2 cut(s)	452, 779
ApoI	RAATTY	2 cut(s)	327, 643
AspLEI	GCGC	2 cut(s)	205, 223
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	2 cut(s)	1039, 1119
AsuHPI	GGTGA	3 cut(s)	131, 797, 991
AsuII	TTCGAA	1 cut(s)	912
AvaII	GGWCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	827
BbvI	GCAGC	2 cut(s)	464, 791
BccI	CCATC	4 cut(s)	343, 490, 533, 580
BceAI	ACGGC	1 cut(s)	812
BciVI	GTATCC	1 cut(s)	1035
BclI	TGATCA	3 cut(s)	375, 705, 733
BcnI	CCSGG	2 cut(s)	1039, 1119
BcoDI	GTCTC	1 cut(s)	608
BcuI	ACTAGT	1 cut(s)	1241
BfaI	CTAG	3 cut(s)	905, 1220, 1242
BfrI	CTTAAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	103
BfuI	GTATCC	1 cut(s)	1035
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	3 cut(s)	453, 780, 1123
BlsI	GCNGC	3 cut(s)	454, 781, 1124
Bme1390I	CCNGG	2 cut(s)	1039, 1119
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	1039, 1119
BmsI	GCATC	3 cut(s)	51, 423, 676
BpiI	GAAGAC	1 cut(s)	827
Bpu14I	TTCGAA	1 cut(s)	912
BpuMI	CCSGG	2 cut(s)	1039, 1119
BsaBI	GATNNNNATC	1 cut(s)	921
BsaHI	GRCGYC	1 cut(s)	248
BsaWI	WCCGGW	2 cut(s)	429, 1047
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	829, 1175
Bse3DI	GCAATG	4 cut(s)	285, 447, 471, 859
Bse8I	GATNNNNATC	1 cut(s)	921
BseGI	GGATG	5 cut(s)	99, 438, 501, 691, 1069
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	4 cut(s)	285, 447, 471, 859
BseNI	ACTGG	2 cut(s)	829, 1175
BseRI	GAGGAG	1 cut(s)	626
BseX3I	CGGCCG	1 cut(s)	1120
BseXI	GCAGC	2 cut(s)	464, 791
BsgI	GTGCAG	2 cut(s)	131, 686
Bsh1285I	CGRYCG	1 cut(s)	1123
BshFI	GGCC	2 cut(s)	730, 1122
BsiEI	CGRYCG	1 cut(s)	1123
BsiSI	CCGG	5 cut(s)	65, 430, 1039, 1048, 1119
BslFI	GGGAC	2 cut(s)	726, 807
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	608
BsmBI	CGTCTC	1 cut(s)	608
BsmFI	GGGAC	2 cut(s)	726, 807
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	730, 1122
Bsp119I	TTCGAA	1 cut(s)	912
Bsp143I	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
BspACI	CCGC	2 cut(s)	56, 1123
BspANI	GGCC	2 cut(s)	730, 1122
BspHI	TCATGA	1 cut(s)	1251
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	1166
BspT104I	TTCGAA	1 cut(s)	912
BspTI	CTTAAG	1 cut(s)	692
BsrDI	GCAATG	4 cut(s)	285, 447, 471, 859
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	829, 1175
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
BssNAI	GTATAC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	248
Bst1107I	GTATAC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	889
BstACI	GRCGYC	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	692
BstAPI	GCANNNNNTGC	2 cut(s)	284, 572
BstBI	TTCGAA	1 cut(s)	912
BstC8I	GCNNGC	8 cut(s)	6, 66, 225, 285, 289, 401, 568, 1155
BstDEI	CTNAG	2 cut(s)	576, 758
BstF5I	GGATG	5 cut(s)	99, 438, 501, 691, 1069
BstHHI	GCGC	2 cut(s)	205, 223
BstKTI	GATC	6 cut(s)	378, 516, 708, 736, 996, 1174
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
BstMCI	CGRYCG	1 cut(s)	1123
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 284, 461, 572, 776, 905
BstNSI	RCATGY	2 cut(s)	768, 1157
BstSCI	CCNGG	2 cut(s)	1037, 1117
BstV1I	GCAGC	2 cut(s)	464, 791
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	1120
BsuI	GTATCC	1 cut(s)	1035
BsuRI	GGCC	2 cut(s)	730, 1122
BtsCI	GGATG	5 cut(s)	99, 438, 501, 691, 1069
BtsI	GCAGTG	1 cut(s)	1210
BtsIMutI	CAGTG	2 cut(s)	1182, 1210
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	8 cut(s)	6, 66, 225, 285, 289, 401, 568, 1155
CciI	TCATGA	1 cut(s)	1251
CfoI	GCGC	2 cut(s)	205, 223
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	1208
CviAII	CATG	8 cut(s)	76, 363, 709, 750, 765, 926, 1154, 1252
CviQI	GTAC	1 cut(s)	1208
DdeI	CTNAG	2 cut(s)	576, 758
DpnI	GATC	6 cut(s)	377, 515, 707, 735, 995, 1173
DpnII	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
EaeI	YGGCCR	1 cut(s)	1120
EagI	CGGCCG	1 cut(s)	1120
EclXI	CGGCCG	1 cut(s)	1120
Eco147I	AGGCCT	1 cut(s)	730
Eco32I	GATATC	3 cut(s)	471, 919, 947
Eco47I	GGWCC	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	1120
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	643
EcoRV	GATATC	3 cut(s)	471, 919, 947
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	8 cut(s)	79, 366, 712, 753, 768, 929, 1157, 1255
FaqI	GGGAC	2 cut(s)	726, 807
FatI	CATG	8 cut(s)	75, 362, 708, 749, 764, 925, 1153, 1251
FbaI	TGATCA	3 cut(s)	375, 705, 733
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	453, 780, 1123
FokI	GGATG	5 cut(s)	106, 445, 508, 698, 1076
Fsp4HI	GCNGC	3 cut(s)	453, 780, 1123
FspBI	CTAG	3 cut(s)	905, 1220, 1242
FspI	TGCGCA	2 cut(s)	204, 222
GlaI	GCGC	2 cut(s)	204, 222
GluI	GCNGC	3 cut(s)	453, 780, 1123
HaeIII	GGCC	2 cut(s)	730, 1122
HapII	CCGG	5 cut(s)	65, 430, 1039, 1048, 1119
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	205, 223
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	8 cut(s)	79, 366, 712, 753, 768, 929, 1157, 1255
Hin6I	GCGC	2 cut(s)	203, 221
HinP1I	GCGC	2 cut(s)	203, 221
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	6 cut(s)	128, 154, 353, 1051, 1077, 1144
HpaII	CCGG	5 cut(s)	65, 430, 1039, 1048, 1119
HphI	GGTGA	3 cut(s)	131, 797, 991
Hpy166II	GTNNAC	3 cut(s)	15, 741, 1208
Hpy188I	TCNGA	4 cut(s)	513, 525, 552, 1131
Hpy188III	TCNNGA	7 cut(s)	158, 299, 474, 536, 683, 1141, 1252
Hpy8I	GTNNAC	3 cut(s)	15, 741, 1208
HpyAV	CCTTC	4 cut(s)	486, 608, 979, 1258
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4IV	ACGT	1 cut(s)	1099
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 284, 461, 572, 776, 905
HpyF3I	CTNAG	2 cut(s)	576, 758
HpySE526I	ACGT	1 cut(s)	1099
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	8 cut(s)	79, 366, 712, 753, 768, 929, 1157, 1255
HspAI	GCGC	2 cut(s)	203, 221
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	3 cut(s)	375, 705, 733
Kzo9I	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
LmnI	GCTCC	1 cut(s)	1031
Lsp1109I	GCAGC	2 cut(s)	464, 791
LweI	GCATC	3 cut(s)	51, 423, 676
MaeI	CTAG	3 cut(s)	905, 1220, 1242
MaeII	ACGT	1 cut(s)	1099
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	6 cut(s)	377, 515, 707, 735, 995, 1173
MboI	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
MboII	GAAGA	6 cut(s)	163, 226, 637, 832, 926, 1003
MflI	RGATCY	1 cut(s)	513
MluCI	AATT	6 cut(s)	88, 309, 327, 419, 643, 651
MlyI	GAGTC	1 cut(s)	1086
MmeI	TCCRAC	3 cut(s)	78, 530, 1109
MroNI	GCCGGC	1 cut(s)	64
MseI	TTAA	2 cut(s)	519, 693
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	5 cut(s)	65, 430, 1039, 1048, 1119
MspR9I	CCNGG	2 cut(s)	1039, 1119
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	6 cut(s)	275, 284, 461, 572, 776, 905
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	2 cut(s)	1039, 1119
NdeII	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	8 cut(s)	79, 366, 712, 753, 768, 929, 1157, 1255
NsbI	TGCGCA	2 cut(s)	204, 222
NspI	RCATGY	2 cut(s)	768, 1157
NspV	TTCGAA	1 cut(s)	912
PaeI	GCATGC	1 cut(s)	1157
PagI	TCATGA	1 cut(s)	1251
PceI	AGGCCT	1 cut(s)	730
PctI	GAATGC	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	66
PfeI	GAWTC	5 cut(s)	128, 154, 353, 1051, 1144
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	3 cut(s)	454, 781, 1124
PleI	GAGTC	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1085
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	1 cut(s)	1209
RsaNI	GTAC	1 cut(s)	1208
SaqAI	TTAA	2 cut(s)	519, 693
SatI	GCNGC	3 cut(s)	453, 780, 1123
Sau3AI	GATC	6 cut(s)	375, 513, 705, 733, 993, 1171
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	1086
ScrFI	CCNGG	2 cut(s)	1039, 1119
SfaNI	GCATC	3 cut(s)	51, 423, 676
SfuI	TTCGAA	1 cut(s)	912
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SpeI	ACTAGT	1 cut(s)	1241
SphI	GCATGC	1 cut(s)	1157
Sse9I	AATT	6 cut(s)	88, 309, 327, 419, 643, 651
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	2 cut(s)	56, 1123
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	3 cut(s)	905, 1220, 1242
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	1037, 1117
TaaI	ACNGT	1 cut(s)	889
TaiI	ACGT	1 cut(s)	1102
TaqI	TCGA	1 cut(s)	912
TasI	AATT	6 cut(s)	88, 309, 327, 419, 643, 651
TatI	WGTACW	1 cut(s)	1207
TauI	GCSGC	1 cut(s)	1125
TfiI	GAWTC	5 cut(s)	128, 154, 353, 1051, 1144
Tru1I	TTAA	2 cut(s)	519, 693
Tru9I	TTAA	2 cut(s)	519, 693
TscAI	CASTG	2 cut(s)	1182, 1210
TseI	GCWGC	2 cut(s)	452, 779
TspDTI	ATGAA	5 cut(s)	738, 1004, 1106, 1240, 1247
TspRI	CASTG	2 cut(s)	1182, 1210
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	327, 643
XceI	RCATGY	2 cut(s)	768, 1157
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	3 cut(s)	905, 1220, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.