Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006945

Physical Location & Seq

Genomic Coordinates Reverse (-)

8393536 .. 8394640

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTGACTTGCTTGGCCGCGCAGGAAGGTTAGAGGAAGCCTTTGAAATGGTAAGGGATATGAAGATCAAGGCAACTTCCAGAATATGGGGTGCATTGCTTGGAGCTTCCAGGATACACCGAAATTTACAATTTGGCAAGTATGCTACCAAGAAGCTCTTAGAACTTGAACCTGATAAAGCTTCAAATTATGTACTCTTATCGAACATGCATGCTGAGGCAGGCAGATGGGATGAGGTTGAGAGAGTCGGGGTGTTAATGAAGGAAAGTGATACGGACAAGCAACCCGGCTGCAGTTGGATTGAAGTCAGGAATCAGGTGCATGCTTTTCTCTTTGATGATCCAGTGCAACCCAGAACAGCAGAGATATGCAGTGTATTGAAGTCTCTAGCCACAGAGATGACAAACACAAGACCCGGAGGATCCACTGGAAACAAGTTCAGGATGTCACTGGGTCTGCCAGTGGCAGCCACTGTGAACTGTGCTGACAATACAGGAGCTAAGAACCTGTACATCATCCAAGTCAAGGGAATCAAGGGTCGTCTGAATCAGTTGCCATCTGCTTGTGTTGGTGACATGGTCACGGCCACTGTGAAGAAGGGTAAGCCTGATCTGATGAAGAAGGTCCTGCCAGCTGTCATTTTGGGGCAGCGCAAGCCATGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

222

Amino Acids

24.53

Weight (kDa)

9.56

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	2.7e-23	E motif
Ribosomal_L14	PF00238	154 - 221	6.5e-15	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39740 FvH4_6g39740
malus_domestica	MD02G1074700.v1.1 MD09G1137200.v1.1 MD17G1127500.v1.1
prunus_persica	Prupe.3G187700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0153851 RchiOBHm_Chr4g0395161
rosa_laevigata	RLG00000009644 RLG00000009647
rosa_roxburghii	Rroxscaffold_2G00094710 Rroxscaffold_5G00340030 Rroxscaffold_5G00340100
rosa_rugosa	Rorug02G0442500 Rorug03G0359500.1
rosa_samantha	Rh2AG506400 Rh2BG516200 Rh2BG516300 Rh2CG492000 Rh2CG492100 Rh2DG528500 Rh4AG056900 Rh4BG055900 Rh4CG061900
rosa_wichuraiana	Rw2G041560 Rw4G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	3 cut(s)	335, 417, 430
AcoI	YGGCCR	2 cut(s)	16, 585
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	2 cut(s)	195, 512
AfiI	CCNNNNNNNGG	2 cut(s)	87, 526
AgsI	TTSAA	5 cut(s)	47, 170, 186, 305, 382
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	5 cut(s)	107, 157, 182, 500, 635
AluI	AGCT	5 cut(s)	107, 157, 182, 500, 635
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	335, 417, 430
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	16, 585
ApeKI	GCWGC	3 cut(s)	291, 467, 649
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	23, 654
AspS9I	GGNCC	1 cut(s)	625
AsuC2I	CCSGG	2 cut(s)	288, 417
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	625
BamHI	GGATCC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	278, 479, 661
BccI	CCATC	2 cut(s)	222, 565
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	288, 417
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	19, 292, 468, 650
BlsI	GCNGC	4 cut(s)	20, 293, 469, 651
Bme1390I	CCNGG	3 cut(s)	112, 288, 417
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	3 cut(s)	112, 288, 417
BmrI	ACTGGG	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	216
BpuMI	CCSGG	2 cut(s)	288, 417
BsaJI	CCNNGG	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 526
Bse1I	ACTGG	4 cut(s)	344, 433, 456, 461
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	3 cut(s)	238, 450, 516
BseLI	CCNNNNNNNGG	2 cut(s)	87, 526
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	4 cut(s)	344, 433, 456, 461
BseXI	GCAGC	3 cut(s)	278, 479, 661
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	18, 587
BsiSI	CCGG	2 cut(s)	288, 417
BslI	CCNNNNNNNGG	2 cut(s)	87, 526
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	18, 587
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	66, 340, 422, 610
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	2 cut(s)	18, 587
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	3 cut(s)	335, 417, 430
BsrDI	GCAATG	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	4 cut(s)	344, 433, 456, 461
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	66, 340, 422, 610
BssT1I	CCWWGG	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	3 cut(s)	475, 482, 592
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	5 cut(s)	213, 223, 324, 633, 656
BstDEI	CTNAG	3 cut(s)	160, 216, 501
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	3 cut(s)	238, 450, 516
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	23, 654
BstKTI	GATC	4 cut(s)	69, 343, 425, 613
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	4 cut(s)	66, 340, 422, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	655
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	3 cut(s)	211, 215, 326
BstSCI	CCNGG	3 cut(s)	110, 286, 415
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	278, 479, 661
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	18, 587
BtgI	CCRYGG	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	238, 450, 516
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	8 cut(s)	351, 379, 426, 449, 468, 471, 588, 664
Cac8I	GCNNGC	5 cut(s)	213, 223, 324, 633, 656
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	2 cut(s)	23, 654
Cfr13I	GGNCC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	194, 511
CviAII	CATG	5 cut(s)	208, 212, 323, 577, 660
CviQI	GTAC	2 cut(s)	194, 511
DdeI	CTNAG	3 cut(s)	160, 216, 501
DpnI	GATC	4 cut(s)	68, 342, 424, 612
DpnII	GATC	4 cut(s)	66, 340, 422, 610
EaeI	YGGCCR	2 cut(s)	16, 585
Eco130I	CCWWGG	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	659
EcoT22I	ATGCAT	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	5 cut(s)	211, 215, 326, 580, 663
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	5 cut(s)	207, 211, 322, 576, 659
Fnu4HI	GCNGC	4 cut(s)	19, 292, 468, 650
FokI	GGATG	3 cut(s)	245, 457, 503
Fsp4HI	GCNGC	4 cut(s)	19, 292, 468, 650
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	22, 653
GluI	GCNGC	4 cut(s)	19, 292, 468, 650
HaeIII	GGCC	2 cut(s)	18, 587
HapII	CCGG	2 cut(s)	288, 417
HhaI	GCGC	2 cut(s)	23, 654
Hin1II	CATG	5 cut(s)	211, 215, 326, 580, 663
Hin6I	GCGC	2 cut(s)	21, 652
HinP1I	GCGC	2 cut(s)	21, 652
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	4 cut(s)	246, 313, 531, 547
HpaII	CCGG	2 cut(s)	288, 417
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	7, 478
Hpy188I	TCNGA	2 cut(s)	546, 615
Hpy188III	TCNNGA	3 cut(s)	81, 310, 442
Hpy8I	GTNNAC	2 cut(s)	7, 478
HpyAV	CCTTC	4 cut(s)	21, 256, 592, 616
HpyCH4III	ACNGT	3 cut(s)	475, 482, 592
HpyCH4V	TGCA	6 cut(s)	95, 211, 294, 322, 349, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	655
HpyF3I	CTNAG	3 cut(s)	160, 216, 501
Hsp92II	CATG	5 cut(s)	211, 215, 326, 580, 663
HspAI	GCGC	2 cut(s)	21, 652
Kzo9I	GATC	4 cut(s)	66, 340, 422, 610
LmnI	GCTCC	2 cut(s)	104, 497
Lsp1109I	GCAGC	3 cut(s)	278, 479, 661
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	447, 572, 580
MalI	GATC	4 cut(s)	68, 342, 424, 612
MboI	GATC	4 cut(s)	66, 340, 422, 610
MboII	GAAGA	3 cut(s)	76, 607, 631
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	3 cut(s)	124, 131, 187
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	28, 211, 229, 413
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	2 cut(s)	288, 417
MspR9I	CCNGG	3 cut(s)	112, 288, 417
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	655
NciI	CCSGG	2 cut(s)	288, 417
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	4 cut(s)	66, 340, 422, 610
NlaIII	CATG	5 cut(s)	211, 215, 326, 580, 663
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	3 cut(s)	447, 572, 580
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	3 cut(s)	211, 215, 326
PaeI	GCATGC	2 cut(s)	215, 326
PfeI	GAWTC	3 cut(s)	313, 531, 547
PflFI	GACNNNGTC	1 cut(s)	578
PflMI	CCANNNNNTGG	1 cut(s)	87
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	20, 293, 469, 651
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	625
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	625
PspPPI	RGGWCCY	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	195, 512
RsaNI	GTAC	2 cut(s)	194, 511
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	4 cut(s)	19, 292, 468, 650
Sau3AI	GATC	4 cut(s)	66, 340, 422, 610
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	3 cut(s)	112, 288, 417
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	398
SphI	GCATGC	2 cut(s)	215, 326
Sse9I	AATT	3 cut(s)	124, 131, 187
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	3 cut(s)	110, 286, 415
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	475, 482, 592
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	124, 131, 187
TatI	WGTACW	2 cut(s)	193, 510
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	313, 531, 547
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	7 cut(s)	351, 379, 433, 456, 468, 478, 595
TseFI	GTSAC	3 cut(s)	447, 572, 580
TseI	GCWGC	3 cut(s)	291, 467, 649
Tsp45I	GTSAC	3 cut(s)	447, 572, 580
TspDTI	ATGAA	3 cut(s)	77, 275, 632
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	7 cut(s)	351, 379, 433, 456, 468, 478, 595
Tth111I	GACNNNGTC	1 cut(s)	578
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	3 cut(s)	211, 215, 326
XspI	CTAG	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.