UBA-like domain (DUF1421)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01560 AT3G01560 AT5G14540 |
| fragaria_vesca | FvH4_4g26262 FvH4_6g28150 |
| malus_domestica | MD09G1028500.v1.1 MD17G1030000.v1.1 |
| prunus_persica | Prupe.1G550900_v2.0.a1 Prupe.3G290000_v2.0.a1 |
| pyrus_communis | pycom111g02250 pycom17g02740 |
| rosa_chinensis | RchiOBHm_Chr2g0132111 RchiOBHm_Chr5g0029881 |
| rosa_laevigata | RLG00000019227 |
| rosa_multiflora | Rmu_sc0004598.1_g000012 Rmu_ssc0000143.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00112390 |
| rosa_rugosa | Rorug02G0169700 Rorug02G0302300 Rorug02G0392200 Rorug05G0511500 |
| rosa_samantha | Rh1BG190500 Rh1DG219300 Rh2AG355300 Rh2BG361500 Rh2CG338900 Rh2DG378100 Rh4DG188100 Rh5BG551200 Rh5CG574100 Rh5DG211600 Rh7BG454200 |
| rosa_wichuraiana | Rw2G028850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 14, 1659 |
| Acc36I | ACCTGC | 2 cut(s) | 124, 370 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 956 |
| AccBSI | CCGCTC | 1 cut(s) | 323 |
| AccI | GTMKAC | 1 cut(s) | 705 |
| AciI | CCGC | 9 cut(s) | 56, 252, 279, 321, 511, 759, 812, 953, 1641 |
| AclWI | GGATC | 6 cut(s) | 45, 58, 242, 910, 1296, 1378 |
| AcoI | YGGCCR | 2 cut(s) | 139, 1642 |
| AcsI | RAATTY | 1 cut(s) | 523 |
| AcuI | CTGAAG | 2 cut(s) | 1185, 1515 |
| AcyI | GRCGYC | 2 cut(s) | 11, 1656 |
| AfaI | GTAC | 4 cut(s) | 396, 615, 873, 1482 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 218, 263, 956, 1151, 1311, 1340 |
| AflIII | ACRYGT | 1 cut(s) | 460 |
| AgsI | TTSAA | 7 cut(s) | 359, 541, 637, 887, 1052, 1296, 1562 |
| AjnI | CCWGG | 3 cut(s) | 426, 955, 1000 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 886, 918 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1536, 1568 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 484 |
| Alw26I | GTCTC | 3 cut(s) | 835, 1163, 1596 |
| Alw44I | GTGCAC | 1 cut(s) | 480 |
| AlwI | GGATC | 6 cut(s) | 45, 58, 242, 910, 1296, 1378 |
| Ama87I | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| AoxI | GGCC | 4 cut(s) | 139, 429, 1614, 1642 |
| ApaLI | GTGCAC | 1 cut(s) | 480 |
| ApeKI | GCWGC | 6 cut(s) | 58, 130, 667, 755, 1093, 1702 |
| ApoI | RAATTY | 1 cut(s) | 523 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 226 |
| AspS9I | GGNCC | 3 cut(s) | 385, 1015, 1614 |
| AsuHPI | GGTGA | 5 cut(s) | 773, 827, 1148, 1361, 1365 |
| AsuII | TTCGAA | 1 cut(s) | 1624 |
| AvaI | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| AvaII | GGWCC | 2 cut(s) | 385, 1015 |
| BaeGI | GKGCMC | 1 cut(s) | 484 |
| BanII | GRGCYC | 2 cut(s) | 306, 976 |
| BbsI | GAAGAC | 2 cut(s) | 1199, 1232 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 484 |
| BbvCI | CCTCAGC | 1 cut(s) | 930 |
| BbvI | GCAGC | 6 cut(s) | 70, 142, 654, 767, 1080, 1714 |
| BccI | CCATC | 5 cut(s) | 117, 221, 569, 1513, 1682 |
| BciT130I | CCWGG | 3 cut(s) | 428, 957, 1002 |
| BciVI | GTATCC | 1 cut(s) | 675 |
| BcoDI | GTCTC | 3 cut(s) | 835, 1163, 1596 |
| BfaI | CTAG | 3 cut(s) | 282, 1670, 1707 |
| BfmI | CTRYAG | 1 cut(s) | 1431 |
| BfuAI | ACCTGC | 2 cut(s) | 124, 370 |
| BfuI | GTATCC | 1 cut(s) | 675 |
| BlpI | GCTNAGC | 1 cut(s) | 663 |
| Bme1390I | CCNGG | 3 cut(s) | 428, 957, 1002 |
| Bme18I | GGWCC | 2 cut(s) | 385, 1015 |
| BmeT110I | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| BmgT120I | GGNCC | 3 cut(s) | 385, 1015, 1614 |
| BmiI | GGNNCC | 3 cut(s) | 277, 973, 1017 |
| BmrFI | CCNGG | 3 cut(s) | 428, 957, 1002 |
| BmrI | ACTGGG | 2 cut(s) | 1197, 1227 |
| BmsI | GCATC | 2 cut(s) | 391, 679 |
| BmuI | ACTGGG | 2 cut(s) | 1197, 1227 |
| BpiI | GAAGAC | 2 cut(s) | 1199, 1232 |
| BpmI | CTGGAG | 4 cut(s) | 984, 1011, 1124, 1320 |
| Bpu10I | CCTNAGC | 1 cut(s) | 930 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 663 |
| Bpu14I | TTCGAA | 1 cut(s) | 1624 |
| BpuEI | CTTGAG | 1 cut(s) | 539 |
| BsaHI | GRCGYC | 2 cut(s) | 11, 1656 |
| BsaJI | CCNNGG | 2 cut(s) | 142, 699 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 307, 337 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 218, 263, 956, 1151, 1311, 1340 |
| Bse1I | ACTGG | 6 cut(s) | 1028, 1203, 1233, 1305, 1546, 1645 |
| Bse3DI | GCAATG | 1 cut(s) | 1493 |
| BseBI | CCWGG | 3 cut(s) | 428, 957, 1002 |
| BseDI | CCNNGG | 2 cut(s) | 142, 699 |
| BseGI | GGATG | 2 cut(s) | 109, 538 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 218, 263, 956, 1151, 1311, 1340 |
| BseMI | GCAATG | 1 cut(s) | 1493 |
| BseMII | CTCAG | 5 cut(s) | 677, 737, 920, 944, 1091 |
| BseNI | ACTGG | 6 cut(s) | 1028, 1203, 1233, 1305, 1546, 1645 |
| BseRI | GAGGAG | 6 cut(s) | 282, 285, 288, 759, 837, 1387 |
| BseSI | GKGCMC | 1 cut(s) | 484 |
| BseXI | GCAGC | 6 cut(s) | 70, 142, 654, 767, 1080, 1714 |
| BseYI | CCCAGC | 4 cut(s) | 185, 1089, 1340, 1535 |
| BshFI | GGCC | 4 cut(s) | 141, 431, 1616, 1644 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 484 |
| BsiHKCI | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| BsiSI | CCGG | 1 cut(s) | 297 |
| BslFI | GGGAC | 4 cut(s) | 195, 911, 1001, 1552 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 218, 263, 956, 1151, 1311, 1340 |
| BsmAI | GTCTC | 3 cut(s) | 835, 1163, 1596 |
| BsmFI | GGGAC | 4 cut(s) | 195, 911, 1001, 1552 |
| BsmI | GAATGC | 1 cut(s) | 574 |
| BsnI | GGCC | 4 cut(s) | 141, 431, 1616, 1644 |
| BsoBI | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| Bsp119I | TTCGAA | 1 cut(s) | 1624 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 306, 484, 976 |
| Bsp1407I | TGTACA | 1 cut(s) | 613 |
| Bsp143I | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 663 |
| Bsp19I | CCATGG | 1 cut(s) | 142 |
| BspACI | CCGC | 9 cut(s) | 56, 252, 279, 321, 511, 759, 812, 953, 1641 |
| BspANI | GGCC | 4 cut(s) | 141, 431, 1616, 1644 |
| BspCNI | CTCAG | 5 cut(s) | 676, 736, 919, 943, 1090 |
| BspHI | TCATGA | 1 cut(s) | 172 |
| BspLI | GGNNCC | 3 cut(s) | 277, 973, 1017 |
| BspMI | ACCTGC | 2 cut(s) | 124, 370 |
| BspPI | GGATC | 6 cut(s) | 45, 58, 242, 910, 1296, 1378 |
| BspQI | GCTCTTC | 1 cut(s) | 120 |
| BspT104I | TTCGAA | 1 cut(s) | 1624 |
| BsrBI | CCGCTC | 1 cut(s) | 323 |
| BsrDI | GCAATG | 1 cut(s) | 1493 |
| BsrGI | TGTACA | 1 cut(s) | 613 |
| BsrI | ACTGG | 6 cut(s) | 1028, 1203, 1233, 1305, 1546, 1645 |
| BssECI | CCNNGG | 2 cut(s) | 142, 699 |
| BssMI | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| BssNI | GRCGYC | 2 cut(s) | 11, 1656 |
| BssT1I | CCWWGG | 2 cut(s) | 142, 699 |
| Bst2UI | CCWGG | 3 cut(s) | 428, 957, 1002 |
| Bst4CI | ACNGT | 8 cut(s) | 409, 591, 883, 1015, 1071, 1257, 1579, 1621 |
| Bst6I | CTCTTC | 3 cut(s) | 120, 1161, 1426 |
| BstACI | GRCGYC | 2 cut(s) | 11, 1656 |
| BstAUI | TGTACA | 1 cut(s) | 613 |
| BstBI | TTCGAA | 1 cut(s) | 1624 |
| BstC8I | GCNNGC | 3 cut(s) | 302, 444, 753 |
| BstDEI | CTNAG | 5 cut(s) | 663, 723, 906, 930, 1077 |
| BstDSI | CCRYGG | 1 cut(s) | 142 |
| BstEII | GGTNACC | 2 cut(s) | 1154, 1454 |
| BstF5I | GGATG | 2 cut(s) | 109, 538 |
| BstKTI | GATC | 7 cut(s) | 40, 53, 250, 918, 1304, 1373, 1572 |
| BstMAI | GTCTC | 3 cut(s) | 835, 1163, 1596 |
| BstMBI | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 510, 764, 1102, 1111, 1277 |
| BstNI | CCWGG | 3 cut(s) | 428, 957, 1002 |
| BstNSI | RCATGY | 2 cut(s) | 446, 464 |
| BstPI | GGTNACC | 2 cut(s) | 1154, 1454 |
| BstSCI | CCNGG | 3 cut(s) | 426, 955, 1000 |
| BstSFI | CTRYAG | 1 cut(s) | 1431 |
| BstSLI | GKGCMC | 1 cut(s) | 484 |
| BstV1I | GCAGC | 6 cut(s) | 70, 142, 654, 767, 1080, 1714 |
| BstV2I | GAAGAC | 2 cut(s) | 1199, 1232 |
| BstX2I | RGATCY | 3 cut(s) | 37, 915, 1301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 149 |
| BstYI | RGATCY | 3 cut(s) | 37, 915, 1301 |
| BsuI | GTATCC | 1 cut(s) | 675 |
| BsuRI | GGCC | 4 cut(s) | 141, 431, 1616, 1644 |
| BtgI | CCRYGG | 1 cut(s) | 142 |
| BtsCI | GGATG | 2 cut(s) | 109, 538 |
| BtsIMutI | CAGTG | 3 cut(s) | 1035, 1240, 1617 |
| BveI | ACCTGC | 2 cut(s) | 124, 370 |
| Cac8I | GCNNGC | 3 cut(s) | 302, 444, 753 |
| CciI | TCATGA | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 3 cut(s) | 385, 1015, 1614 |
| Csp6I | GTAC | 4 cut(s) | 395, 614, 872, 1481 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1476, 1511 |
| CviAII | CATG | 8 cut(s) | 143, 173, 433, 443, 461, 563, 737, 1160 |
| CviQI | GTAC | 4 cut(s) | 395, 614, 872, 1481 |
| DdeI | CTNAG | 5 cut(s) | 663, 723, 906, 930, 1077 |
| DpnI | GATC | 7 cut(s) | 39, 52, 249, 917, 1303, 1372, 1571 |
| DpnII | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| EaeI | YGGCCR | 2 cut(s) | 139, 1642 |
| Eam1104I | CTCTTC | 3 cut(s) | 120, 1161, 1426 |
| EarI | CTCTTC | 3 cut(s) | 120, 1161, 1426 |
| EciI | GGCGGA | 1 cut(s) | 801 |
| Eco130I | CCWWGG | 2 cut(s) | 142, 699 |
| Eco24I | GRGCYC | 2 cut(s) | 306, 976 |
| Eco47I | GGWCC | 2 cut(s) | 385, 1015 |
| Eco57I | CTGAAG | 2 cut(s) | 1185, 1515 |
| Eco88I | CYCGRG | 3 cut(s) | 497, 1476, 1597 |
| Eco91I | GGTNACC | 2 cut(s) | 1154, 1454 |
| EcoO65I | GGTNACC | 2 cut(s) | 1154, 1454 |
| EcoRI | GAATTC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 3 cut(s) | 426, 955, 1000 |
| EcoT14I | CCWWGG | 2 cut(s) | 142, 699 |
| EcoT22I | ATGCAT | 1 cut(s) | 738 |
| EcoT38I | GRGCYC | 2 cut(s) | 306, 976 |
| ErhI | CCWWGG | 2 cut(s) | 142, 699 |
| FaeI | CATG | 8 cut(s) | 146, 176, 436, 446, 464, 566, 740, 1163 |
| FaqI | GGGAC | 4 cut(s) | 195, 911, 1001, 1552 |
| FatI | CATG | 8 cut(s) | 142, 172, 432, 442, 460, 562, 736, 1159 |
| FauI | CCCGC | 2 cut(s) | 259, 518 |
| FblI | GTMKAC | 1 cut(s) | 705 |
| FokI | GGATG | 2 cut(s) | 96, 545 |
| FriOI | GRGCYC | 2 cut(s) | 306, 976 |
| FspBI | CTAG | 3 cut(s) | 282, 1670, 1707 |
| GsaI | CCCAGC | 4 cut(s) | 189, 1093, 1344, 1539 |
| GsuI | CTGGAG | 4 cut(s) | 984, 1011, 1124, 1320 |
| HaeIII | GGCC | 4 cut(s) | 141, 431, 1616, 1644 |
| HapII | CCGG | 1 cut(s) | 297 |
| Hin1I | GRCGYC | 2 cut(s) | 11, 1656 |
| Hin1II | CATG | 8 cut(s) | 146, 176, 436, 446, 464, 566, 740, 1163 |
| HincII | GTYRAC | 2 cut(s) | 1654, 1680 |
| HindII | GTYRAC | 2 cut(s) | 1654, 1680 |
| HinfI | GANTC | 3 cut(s) | 350, 743, 1352 |
| HpaII | CCGG | 1 cut(s) | 297 |
| HphI | GGTGA | 5 cut(s) | 773, 827, 1148, 1361, 1365 |
| Hpy166II | GTNNAC | 6 cut(s) | 482, 706, 805, 872, 1654, 1680 |
| Hpy188I | TCNGA | 5 cut(s) | 221, 332, 418, 726, 909 |
| Hpy188III | TCNNGA | 5 cut(s) | 173, 347, 499, 608, 1597 |
| Hpy8I | GTNNAC | 6 cut(s) | 482, 706, 805, 872, 1654, 1680 |
| Hpy99I | CGWCG | 3 cut(s) | 13, 16, 221 |
| HpyCH4III | ACNGT | 8 cut(s) | 409, 591, 883, 1015, 1071, 1257, 1579, 1621 |
| HpyCH4IV | ACGT | 2 cut(s) | 11, 1656 |
| HpyCH4V | TGCA | 5 cut(s) | 365, 482, 670, 677, 736 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 510, 764, 1102, 1111, 1277 |
| HpyF3I | CTNAG | 5 cut(s) | 663, 723, 906, 930, 1077 |
| HpySE526I | ACGT | 2 cut(s) | 11, 1656 |
| Hsp92I | GRCGYC | 2 cut(s) | 11, 1656 |
| Hsp92II | CATG | 8 cut(s) | 146, 176, 436, 446, 464, 566, 740, 1163 |
| Kzo9I | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| LguI | GCTCTTC | 1 cut(s) | 120 |
| LmnI | GCTCC | 6 cut(s) | 275, 328, 772, 850, 971, 1400 |
| Lsp1109I | GCAGC | 6 cut(s) | 70, 142, 654, 767, 1080, 1714 |
| LweI | GCATC | 2 cut(s) | 391, 679 |
| MaeI | CTAG | 3 cut(s) | 282, 1670, 1707 |
| MaeII | ACGT | 2 cut(s) | 11, 1656 |
| MaeIII | GTNAC | 4 cut(s) | 42, 1154, 1454, 1579 |
| MalI | GATC | 7 cut(s) | 39, 52, 249, 917, 1303, 1372, 1571 |
| MbiI | CCGCTC | 1 cut(s) | 323 |
| MboI | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| MflI | RGATCY | 3 cut(s) | 37, 915, 1301 |
| MhlI | GDGCHC | 4 cut(s) | 8, 306, 484, 976 |
| MluCI | AATT | 5 cut(s) | 334, 451, 523, 992, 1046 |
| MlyI | GAGTC | 1 cut(s) | 1361 |
| MmeI | TCCRAC | 4 cut(s) | 199, 336, 447, 573 |
| Mph1103I | ATGCAT | 1 cut(s) | 738 |
| MroXI | GAANNNNTTC | 1 cut(s) | 226 |
| MseI | TTAA | 2 cut(s) | 627, 1125 |
| MslI | CAYNNNNRTG | 4 cut(s) | 147, 567, 840, 1365 |
| MspA1I | CMGCKG | 5 cut(s) | 667, 1093, 1340, 1535, 1641 |
| MspI | CCGG | 1 cut(s) | 297 |
| MspR9I | CCNGG | 3 cut(s) | 428, 957, 1002 |
| Mva1269I | GAATGC | 1 cut(s) | 574 |
| MvaI | CCWGG | 3 cut(s) | 428, 957, 1002 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 510, 764, 1102, 1111, 1277 |
| NcoI | CCATGG | 1 cut(s) | 142 |
| NdeII | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| NlaIII | CATG | 8 cut(s) | 146, 176, 436, 446, 464, 566, 740, 1163 |
| NlaIV | GGNNCC | 3 cut(s) | 277, 973, 1017 |
| NmuCI | GTSAC | 3 cut(s) | 42, 1154, 1579 |
| NsiI | ATGCAT | 1 cut(s) | 738 |
| NspI | RCATGY | 2 cut(s) | 446, 464 |
| NspV | TTCGAA | 1 cut(s) | 1624 |
| PaeI | GCATGC | 1 cut(s) | 446 |
| PaeR7I | CTCGAG | 1 cut(s) | 497 |
| PagI | TCATGA | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 460 |
| PciSI | GCTCTTC | 1 cut(s) | 120 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 574 |
| PdmI | GAANNNNTTC | 1 cut(s) | 226 |
| PfeI | GAWTC | 2 cut(s) | 350, 743 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 956 |
| PleI | GAGTC | 1 cut(s) | 1360 |
| PpsI | GAGTC | 1 cut(s) | 1360 |
| PscI | ACATGT | 1 cut(s) | 460 |
| Psp6I | CCWGG | 3 cut(s) | 426, 955, 1000 |
| PspEI | GGTNACC | 2 cut(s) | 1154, 1454 |
| PspFI | CCCAGC | 4 cut(s) | 185, 1089, 1340, 1535 |
| PspGI | CCWGG | 3 cut(s) | 426, 955, 1000 |
| PspN4I | GGNNCC | 3 cut(s) | 277, 973, 1017 |
| PspPI | GGNCC | 3 cut(s) | 385, 1015, 1614 |
| PsuI | RGATCY | 3 cut(s) | 37, 915, 1301 |
| PvuII | CAGCTG | 4 cut(s) | 667, 1093, 1340, 1535 |
| RsaI | GTAC | 4 cut(s) | 396, 615, 873, 1482 |
| RsaNI | GTAC | 4 cut(s) | 395, 614, 872, 1481 |
| RseI | CAYNNNNRTG | 4 cut(s) | 147, 567, 840, 1365 |
| SapI | GCTCTTC | 1 cut(s) | 120 |
| SaqAI | TTAA | 2 cut(s) | 627, 1125 |
| Sau3AI | GATC | 7 cut(s) | 37, 50, 247, 915, 1301, 1370, 1569 |
| Sau96I | GGNCC | 3 cut(s) | 385, 1015, 1614 |
| SchI | GAGTC | 1 cut(s) | 1361 |
| ScrFI | CCNGG | 3 cut(s) | 428, 957, 1002 |
| SduI | GDGCHC | 4 cut(s) | 8, 306, 484, 976 |
| SfaNI | GCATC | 2 cut(s) | 391, 679 |
| SfcI | CTRYAG | 1 cut(s) | 1431 |
| Sfr274I | CTCGAG | 1 cut(s) | 497 |
| SfuI | TTCGAA | 1 cut(s) | 1624 |
| SinI | GGWCC | 2 cut(s) | 385, 1015 |
| SlaI | CTCGAG | 1 cut(s) | 497 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 147, 567, 840, 1365 |
| SmlI | CTYRAG | 2 cut(s) | 497, 518 |
| SmoI | CTYRAG | 2 cut(s) | 497, 518 |
| SphI | GCATGC | 1 cut(s) | 446 |
| Sse9I | AATT | 5 cut(s) | 334, 451, 523, 992, 1046 |
| SsiI | CCGC | 9 cut(s) | 56, 252, 279, 321, 511, 759, 812, 953, 1641 |
| SspMI | CTAG | 3 cut(s) | 282, 1670, 1707 |
| StyD4I | CCNGG | 3 cut(s) | 426, 955, 1000 |
| StyI | CCWWGG | 2 cut(s) | 142, 699 |
| TaaI | ACNGT | 8 cut(s) | 409, 591, 883, 1015, 1071, 1257, 1579, 1621 |
| TaiI | ACGT | 2 cut(s) | 14, 1659 |
| TaqI | TCGA | 8 cut(s) | 81, 246, 498, 607, 772, 1572, 1624, 1723 |
| TaqII | GACCGA | 1 cut(s) | 402 |
| TasI | AATT | 5 cut(s) | 334, 451, 523, 992, 1046 |
| TatI | WGTACW | 2 cut(s) | 394, 613 |
| TauI | GCSGC | 4 cut(s) | 58, 281, 761, 1644 |
| TfiI | GAWTC | 2 cut(s) | 350, 743 |
| Tru1I | TTAA | 2 cut(s) | 627, 1125 |
| Tru9I | TTAA | 2 cut(s) | 627, 1125 |
| TscAI | CASTG | 3 cut(s) | 1035, 1240, 1624 |
| TseFI | GTSAC | 3 cut(s) | 42, 1154, 1579 |
| TseI | GCWGC | 6 cut(s) | 58, 130, 667, 755, 1093, 1702 |
| Tsp45I | GTSAC | 3 cut(s) | 42, 1154, 1579 |
| TspDTI | ATGAA | 5 cut(s) | 67, 104, 110, 449, 1418 |
| TspRI | CASTG | 3 cut(s) | 1035, 1240, 1624 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 956 |
| VneI | GTGCAC | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 2 cut(s) | 385, 1015 |
| XapI | RAATTY | 1 cut(s) | 523 |
| XceI | RCATGY | 2 cut(s) | 446, 464 |
| XhoI | CTCGAG | 1 cut(s) | 497 |
| XmiI | GTMKAC | 1 cut(s) | 705 |
| XmnI | GAANNNNTTC | 1 cut(s) | 226 |
| XspI | CTAG | 3 cut(s) | 282, 1670, 1707 |
| ZraI | GACGTC | 2 cut(s) | 12, 1657 |
| Zsp2I | ATGCAT | 1 cut(s) | 738 |