Rh4DG188100

UBA-like domain (DUF1421)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004149
Physical Location & Seq
Reverse (-)
37096785 .. 37099110
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG188100.1

Sequence Viewer

Length: 669 bp
ATGCCGTCCCATTGGTGTAAAGGAATCTGGTCATCAGATCTGAGGAAGAATGTGCATCTGGTGTTGAAGAAGTGTGAGAGCCCATCACCACGGTCACCTTCTCGGACTCGACCTTGGCCGCAATGGTCGTCGCCCATTTCCTCATCTCCGCCTGTGCAGGAAGATATCTTGCCGAACAATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCCACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAAATTATGGTTCTGTGGATTCCTTCGAACGTTCAAAAGATGTTGTGGAGAAGGACCGAAATGTTCCTGATGCTACAATTATATCAGAGATTGACCACACCATGAAGAAGTATGCTGATAATTTACTTCAAGTTATGGAAGGTATTAGTGCACGACTAACACAACTTGAGAGCAGAACCCGCCACCTTGAGAATTCTGTTGATGATTTGAAGGTATCTGTGGGAAACAATCATGGAAATGCTGATGGAAAGATGAGACAAATGGAGAATATTCTTAGAGATGTGCAAACAGGTGTTCAGGATTTGAAGGATAAGCAATCAATAGTAGAGGCTCAGAATCCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
DUF1421

Protein Analysis

222

Amino Acids

24.67

Weight (kDa)

6.97

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 119, 149, 502
AclI AACGTT 1 cut(s) 352
AclWI GGATC 2 cut(s) 261, 274
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 514
AfiI CCNNNNNNNGG 2 cut(s) 206, 251
AgsI TTSAA 5 cut(s) 67, 357, 452, 532, 628
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 571
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 2 cut(s) 261, 274
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 471
ApoI RAATTY 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 78, 87
AsuII TTCGAA 1 cut(s) 348
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 475
BamHI GGATCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 475
BccI CCATC 5 cut(s) 91, 200, 209, 326, 560
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 273, 667
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 211, 268
BmsI GCATC 3 cut(s) 64, 226, 382
BpmI CTGGAG 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 509, 530
BsaJI CCNNGG 2 cut(s) 89, 113
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 251
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 89, 113
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 206, 251
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 32, 668
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 475
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 475
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 206, 251
BsmAI GTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 83, 475
Bsp143I GATC 2 cut(s) 37, 266
BspACI CCGC 3 cut(s) 119, 149, 502
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 2 cut(s) 33, 667
BspLI GGNNCC 2 cut(s) 211, 268
BspPI GGATC 2 cut(s) 261, 274
BspT104I TTCGAA 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 89, 113
BssMI GATC 2 cut(s) 37, 266
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 41, 596, 654
BstDSI CCRYGG 1 cut(s) 89
BstEII GGTNACC 1 cut(s) 93
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 2 cut(s) 40, 269
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 2 cut(s) 37, 266
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstPI GGTNACC 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 37, 266
BstYI RGATCY 2 cut(s) 37, 266
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 376
CviAII CATG 2 cut(s) 424, 554
CviJI RGCY 6 cut(s) 81, 118, 190, 212, 278, 653
CviKI_1 RGCY 6 cut(s) 81, 118, 190, 212, 278, 653
DdeI CTNAG 3 cut(s) 41, 596, 654
DpnI GATC 2 cut(s) 39, 268
DpnII GATC 2 cut(s) 37, 266
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 83
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 514
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 427, 557
FaiI YATR 6 cut(s) 330, 404, 425, 435, 458, 555
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 423, 553
FauI CCCGC 1 cut(s) 509
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 273, 667
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 427, 557
HinfI GANTC 5 cut(s) 24, 106, 293, 341, 658
HphI GGTGA 2 cut(s) 78, 87
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 7 cut(s) 37, 42, 105, 254, 323, 409, 657
Hpy188III TCNNGA 2 cut(s) 389, 620
Hpy8I GTNNAC 1 cut(s) 473
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 6 cut(s) 108, 355, 367, 455, 526, 622
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 55, 157, 473, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 3 cut(s) 41, 596, 654
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 2 cut(s) 427, 557
Kzo9I GATC 2 cut(s) 37, 266
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 9 cut(s) 13, 44, 143, 165, 192, 200, 402, 597, 605
LweI GCATC 3 cut(s) 64, 226, 382
MaeI CTAG 2 cut(s) 273, 667
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 93
MalI GATC 2 cut(s) 39, 268
MboI GATC 2 cut(s) 37, 266
MboII GAAGA 5 cut(s) 58, 79, 173, 207, 439
MflI RGATCY 2 cut(s) 37, 266
MhlI GDGCHC 2 cut(s) 83, 475
MluCI AATT 4 cut(s) 325, 399, 442, 514
MlyI GAGTC 2 cut(s) 100, 302
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 7 cut(s) 36, 151, 223, 248, 254, 257, 643
MslI CAYNNNNRTG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 501
NdeII GATC 2 cut(s) 37, 266
NlaIII CATG 2 cut(s) 427, 557
NlaIV GGNNCC 2 cut(s) 211, 268
NmuCI GTSAC 1 cut(s) 93
NspV TTCGAA 1 cut(s) 348
PfeI GAWTC 3 cut(s) 24, 341, 658
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 2 cut(s) 100, 301
PpsI GAGTC 2 cut(s) 100, 301
Psp1406I AACGTT 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 211, 268
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 37, 266
RseI CAYNNNNRTG 1 cut(s) 558
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 37, 266
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 100, 302
SduI GDGCHC 2 cut(s) 83, 475
SetI ASST 9 cut(s) 100, 115, 247, 259, 355, 466, 510, 537, 616
SfaNI GCATC 3 cut(s) 64, 226, 382
SfuI TTCGAA 1 cut(s) 348
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 488, 509
SmoI CTYRAG 2 cut(s) 488, 509
Sse9I AATT 4 cut(s) 325, 399, 442, 514
SsiI CCGC 3 cut(s) 119, 149, 502
SspI AATATT 1 cut(s) 592
SspMI CTAG 2 cut(s) 273, 667
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 109, 348
TaqII GACCGA 1 cut(s) 393
TasI AATT 4 cut(s) 325, 399, 442, 514
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 3 cut(s) 24, 341, 658
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 211
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 514
XspI CTAG 2 cut(s) 273, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.